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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI768
Library VH
(Link to library)
Clone ID VHI768
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15491-1|Contig-U15795-1
Original site URL
Representative seq. ID VHI768P
(Link to Original site)
Representative DNA sequence 
>VHI768 (VHI768Q) /CSM/VH/VHI7-C/VHI768Q.Seq.d/
AGTTGACAATTATCTTTAATTAAAATGTTTTTTTTAAAAAAAATCAATCCATTAAAAATT
TAAAACATGGATATTTTTTTAAAAAATTTAGATATTTATATTTATTTATTAATAATGTTT
TTTTAAATAAAATCAACAAACAGGTGTATGGGAAGCATTAGAAGATAGTGGTATTGATCC
AATTAGTTTACGTGGTACCAATACAAGTACATTTATTGGTAGTAGTACTATTGATTATAA
TAATCTTCAAAAATCACCATTTGAAACTCAAAATAATATTTTTGGTTCCACAACTAATTC
CGTTGCAAATAGAATAGGTTATTGCTTTGATTTTAGAGGTGAAAATTTAACAATTGATAC
AGCTTGTTCAAGTTCATCAAATGCAATTAATTGTGGATATAATTCAATTAAATCAAATAA
ATCAAATGTTTCAATCGTTGGTGGTGTTAATTTTATATTAGACCCACACATTTCAAAATC
GTTCACCCAATTAGATATGTTAAGTCCAACAGGTAAATGTCATACATTTTCATCGGATGC
TGATGGTTATGTTCGTTCAGAAGGTGTTGGTATCATTGTATTAAAGAGATTAAAAGATGC
AATCAAAGATTXXXXXXXXXXATCAATTGATGATAAAGATTTAATATCAATTCATCANCC
AATTTTAGCACAACCTGCAAATGTTATCATTCAAGTATCACTCTATGAATTATATAAACA
TTGGGGCGTTTCAGCAGATATTATCATTGGTCATTCTCTTGGTGAAATATCATCAGCATA
TTGTTCAGGTATGATTGATTTTCAAACATTATGCTACTTGACTTACCATAGATCAGTAGC
TCAAAATAGAACCATAGGTACAGGTAGAATGTTATCAGTTAATATTAGTTCAGATGAATT
CATTAATAAATATCAATCTACAACTAAATATAAATCATTAGAAATTGCATGTTACAATTC
ACCAACATCGATCGTTATCGCAGGTAAAGAAGACTTATTAAATGAAATTACCAATGAATT
CAAATCAAATGATATCTTTTGTTCAATGTTAGGATTATTATCATCATTTCATACATCAAG
TCAACAAATGATTAAAGATGAAGTATGTTCATTAAATATTTCATCGAAACAACCATCGAT
AGCAGTATTTTCAACAGTTACAACCAATTTATTCAATCATCAAACTTCACCGTTCAATGC
AGATTATGCATTTAATAATATTCGCCAACCAGTTCGTTTCACACAAACAATTACAAATCT
TTACAAACATATCGAATCAAATGATATGGGTAATGAAATTACATTCATTNAAGTTTCACC
ACATCCAACATTACAATATTACTTAAATCAAATGAAATCAACTCAATCAAGTTACTTTAA
TAATGGTAAAAACATTACAATCTATTCACCATTAAATAAAAAGAAGAANNATTATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
vdnyl*lkcff*kksih*kfktwiff*ki*ififiy**cffk*NQQTGVWEALEDSGIDP
ISLRGTNTSTFIGSSTIDYNNLQKSPFETQNNIFGSTTNSVANRIGYCFDFRGENLTIDT
ACSSSSNAINCGYNSIKSNKSNVSIVGGVNFILDPHISKSFTQLDMLSPTGKCHTFSSDA
DGYVRSEGVGIIVLKRLKDAIKD---

---SIDDKDLISIHXPILAQPANVIIQVSLYELYKHWGVSADIIIGHSLGEISSAYCSGM
IDFQTLCYLTYHRSVAQNRTIGTGRMLSVNISSDEFINKYQSTTKYKSLEIACYNSPTSI
VIAGKEDLLNEITNEFKSNDIFCSMLGLLSSFHTSSQQMIKDEVCSLNISSKQPSIAVFS
TVTTNLFNHQTSPFNADYAFNNIRQPVRFTQTITNLYKHIESNDMGNEITFIXVSPHPTL
QYYLNQMKSTQSSYFNNGKNITIYSPLNKKKXXY
Translated Amino Acid sequence (All Frames) 
Frame A:
s*qlslikmfflkkinplki*nmdiflknldiyiyllimff*ikstnrcmgsirr*wy*s
n*ftwyqykyiyw**yy*l**sskiti*nsk*yfwfhn*frck*nrlll*f*r*kfnn*y
slfkfikcn*lwi*fn*ik*ikcfnrwwc*fyirpthfkivhpiryvksnr*msyifigc
*wlcsfrrcwyhcikeikrcnqr---

---in***rfninssxnfsttckcyhssitl*ii*tlgrfsryyhwsfsw*niisilfry
d*fsnimlldlp*isssk*nhryr*nvis*y*fr*ih**isiyn*i*iirncmlqftnid
ryrr*rrlik*nyq*iqik*yllfnvriiiiisyikstnd*r*smfikyfiettidssif
nsynqfiqssnftvqcrlci**ysptssfhtnnykslqtyrik*yg**nyihxsfttsni
tillksneinsikll**w*khynlftik*keexl*

Frame B:
vdnyl*lkcff*kksih*kfktwiff*ki*ififiy**cffk*NQQTGVWEALEDSGIDP
ISLRGTNTSTFIGSSTIDYNNLQKSPFETQNNIFGSTTNSVANRIGYCFDFRGENLTIDT
ACSSSSNAINCGYNSIKSNKSNVSIVGGVNFILDPHISKSFTQLDMLSPTGKCHTFSSDA
DGYVRSEGVGIIVLKRLKDAIKD---

---SIDDKDLISIHXPILAQPANVIIQVSLYELYKHWGVSADIIIGHSLGEISSAYCSGM
IDFQTLCYLTYHRSVAQNRTIGTGRMLSVNISSDEFINKYQSTTKYKSLEIACYNSPTSI
VIAGKEDLLNEITNEFKSNDIFCSMLGLLSSFHTSSQQMIKDEVCSLNISSKQPSIAVFS
TVTTNLFNHQTSPFNADYAFNNIRQPVRFTQTITNLYKHIESNDMGNEITFIXVSPHPTL
QYYLNQMKSTQSSYFNNGKNITIYSPLNKKKXXY

Frame C:
ltiifn*nvffkknqsiknlkhgyffkkfrylylfinnvflnkinkqvygkh*kivvliq
lvyvvpiqvhllvvvlliiiifknhhlklkiiflvpqliplqie*vialilevki*qliq
lvqvhqmqlivdiiqlnqinqmfqslvvlily*thtfqnrspn*ic*vqqvnvihfhrml
mvmfvqkvlvsly*rd*kmqski---

---qlmiki*yqfixqf*hnlqmlsfkyhsmnyinigafqqilslvillvkyhqhivqv*
lifkhyat*ltidq*lkiep*vqvecyqlilvqmnslininlqlninh*klhvtihqhrs
lsqvkkty*mklpmnsnqmisfvqc*dyyhhfihqvnk*lkmkyvh*ifhrnnhr*qyfq
qlqpiysiiklhrsmqimhliifanqfvshkqlqiftnisnqmiwvmklhsxkfhhiqhy
nit*ik*nqlnqvtlimvktlqsihh*ikrrxii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI768 (VHI768Q) /CSM/VH/VHI7-C/VHI768Q.Seq.d/                       2520   0.0
SSL516 (SSL516Q) /CSM/SS/SSL5-A/SSL516Q.Seq.d/                        716   0.0
SSD615 (SSD615Q) /CSM/SS/SSD6-A/SSD615Q.Seq.d/                        523   e-147
CFJ465 (CFJ465Q) /CSM/CF/CFJ4-C/CFJ465Q.Seq.d/                        343   5e-93
SHK164 (SHK164Q) /CSM/SH/SHK1-C/SHK164Q.Seq.d/                        157   6e-37
VFL242 (VFL242Q) /CSM/VF/VFL2-B/VFL242Q.Seq.d/                        133   8e-30
SHL350 (SHL350Q) /CSM/SH/SHL3-C/SHL350Q.Seq.d/                         82   3e-14
CHF367 (CHF367Q) /CSM/CH/CHF3-C/CHF367Q.Seq.d/                         82   3e-14
AHF268 (AHF268Q) /CSM/AH/AHF2-C/AHF268Q.Seq.d/                         82   3e-14
AHE818 (AHE818Q) /CSM/AH/AHE8-A/AHE818Q.Seq.d/                         82   3e-14
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442023) Dictyostelium discoideum cDNA clone:ddv48h17, 3' ...  1594   0.0    1
(BJ423258) Dictyostelium discoideum cDNA clone:ddv48h17, 5' ...   948   0.0    2
(AU072184) Dictyostelium discoideum slug cDNA, clone SSD615.      412   e-110  1
(AU074679) Dictyostelium discoideum slug cDNA, clone SSL516.      365   3e-96  1
(BJ361963) Dictyostelium discoideum cDNA clone:ddc19b18, 5' ...   343   1e-89  1
(BJ375660) Dictyostelium discoideum cDNA clone:ddc19b18, 3' ...   230   1e-55  1
(BJ408100) Dictyostelium discoideum cDNA clone:dds44o15, 3' ...   111   2e-53  6
(BJ433896) Dictyostelium discoideum cDNA clone:ddv23c12, 3' ...   111   3e-51  7
(BJ378702) Dictyostelium discoideum cDNA clone:ddc32f17, 3' ...    66   1e-36  7
(BJ350963) Dictyostelium discoideum cDNA clone:dda41g18, 3' ...    66   2e-36  7
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FN7) RecName: Full=Probable polyketide synthase 33;         ...   518   e-145
(Q54FQ3) RecName: Full=Probable polyketide synthase 29;         ...   495   e-138
(Q54FC8) RecName: Full=Probable polyketide synthase 39;         ...   483   e-135
(Q54FD2) RecName: Full=Probable polyketide synthase 38;         ...   471   e-131
(Q54KU5) RecName: Full=Probable polyketide synthase 24;         ...   333   1e-89
(Q54KU3) RecName: Full=Probable polyketide synthase 25;         ...   332   2e-89
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso...   309   2e-82
AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...   308   4e-82
(Q54TW0) RecName: Full=Probable polyketide synthase 18;         ...   305   4e-81
AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso...   305   4e-81
protein update 2009. 7.14
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHI768 is nuc
5' end seq. ID VHI768F
5' end seq. 
>VHI768F.Seq
AGTTGACAATTATCTTTAATTAAAATGTTTTTTTTAAAAAAAATCAATCCATTAAAAATT
TAAAACATGGATATTTTTTTAAAAAATTTAGATATTTATATTTATTTATTAATAATGTTT
TTTTAAATAAAATCAACAAACAGGTGTATGGGAAGCATTAGAAGATAGTGGTATTGATCC
AATTAGTTTACGTGGTACCAATACAAGTACATTTATTGGTAGTAGTACTATTGATTATAA
TAATCTTCAAAAATCACCATTTGAAACTCAAAATAATATTTTTGGTTCCACAACTAATTC
CGTTGCAAATAGAATAGGTTATTGCTTTGATTTTAGAGGTGAAAATTTAACAATTGATAC
AGCTTGTTCAAGTTCATCAAATGCAATTAATTGTGGATATAATTCAATTAAATCAAATAA
ATCAAATGTTTCAATCGTTGGTGGTGTTAATTTTATATTAGACCCACACATTTCAAAATC
GTTCACCCAATTAGATATGTTAAGTCCAACAGGTAAATGTCATACATTTTCATCGGATGC
TGATGGTTATGTTCGTTCAGAAGGTGTTGGTATCATTGTATTAAAGAGATTAAAAGATGC
AATCAAAGATTNNNNNNNNNN
Length of 5' end seq. 621
3' end seq. ID VHI768Z
3' end seq. 
>VHI768Z.Seq
NNNNNNNNNNATCAATTGATGATAAAGATTTAATATCAATTCATCANCCAATTTTAGCAC
AACCTGCAAATGTTATCATTCAAGTATCACTCTATGAATTATATAAACATTGGGGCGTTT
CAGCAGATATTATCATTGGTCATTCTCTTGGTGAAATATCATCAGCATATTGTTCAGGTA
TGATTGATTTTCAAACATTATGCTACTTGACTTACCATAGATCAGTAGCTCAAAATAGAA
CCATAGGTACAGGTAGAATGTTATCAGTTAATATTAGTTCAGATGAATTCATTAATAAAT
ATCAATCTACAACTAAATATAAATCATTAGAAATTGCATGTTACAATTCACCAACATCGA
TCGTTATCGCAGGTAAAGAAGACTTATTAAATGAAATTACCAATGAATTCAAATCAAATG
ATATCTTTTGTTCAATGTTAGGATTATTATCATCATTTCATACATCAAGTCAACAAATGA
TTAAAGATGAAGTATGTTCATTAAATATTTCATCGAAACAACCATCGATAGCAGTATTTT
CAACAGTTACAACCAATTTATTCAATCATCAAACTTCACCGTTCAATGCAGATTATGCAT
TTAATAATATTCGCCAACCAGTTCGTTTCACACAAACAATTACAAATCTTTACAAACATA
TCGAATCAAATGATATGGGTAATGAAATTACATTCATTNAAGTTTCACCACATCCAACAT
TACAATATTACTTAAATCAAATGAAATCAACTCAATCAAGTTACTTTAATAATGGTAAAA
ACATTACAATCTATTCACCATTAAATAAAAAGAAGAANNATTATAA
Length of 3' end seq. 826
Connected seq. ID VHI768P
Connected seq. 
>VHI768P.Seq
AGTTGACAATTATCTTTAATTAAAATGTTTTTTTTAAAAAAAATCAATCCATTAAAAATT
TAAAACATGGATATTTTTTTAAAAAATTTAGATATTTATATTTATTTATTAATAATGTTT
TTTTAAATAAAATCAACAAACAGGTGTATGGGAAGCATTAGAAGATAGTGGTATTGATCC
AATTAGTTTACGTGGTACCAATACAAGTACATTTATTGGTAGTAGTACTATTGATTATAA
TAATCTTCAAAAATCACCATTTGAAACTCAAAATAATATTTTTGGTTCCACAACTAATTC
CGTTGCAAATAGAATAGGTTATTGCTTTGATTTTAGAGGTGAAAATTTAACAATTGATAC
AGCTTGTTCAAGTTCATCAAATGCAATTAATTGTGGATATAATTCAATTAAATCAAATAA
ATCAAATGTTTCAATCGTTGGTGGTGTTAATTTTATATTAGACCCACACATTTCAAAATC
GTTCACCCAATTAGATATGTTAAGTCCAACAGGTAAATGTCATACATTTTCATCGGATGC
TGATGGTTATGTTCGTTCAGAAGGTGTTGGTATCATTGTATTAAAGAGATTAAAAGATGC
AATCAAAGATT----------ATCAATTGATGATAAAGATTTAATATCAATTCATCANCC
AATTTTAGCACAACCTGCAAATGTTATCATTCAAGTATCACTCTATGAATTATATAAACA
TTGGGGCGTTTCAGCAGATATTATCATTGGTCATTCTCTTGGTGAAATATCATCAGCATA
TTGTTCAGGTATGATTGATTTTCAAACATTATGCTACTTGACTTACCATAGATCAGTAGC
TCAAAATAGAACCATAGGTACAGGTAGAATGTTATCAGTTAATATTAGTTCAGATGAATT
CATTAATAAATATCAATCTACAACTAAATATAAATCATTAGAAATTGCATGTTACAATTC
ACCAACATCGATCGTTATCGCAGGTAAAGAAGACTTATTAAATGAAATTACCAATGAATT
CAAATCAAATGATATCTTTTGTTCAATGTTAGGATTATTATCATCATTTCATACATCAAG
TCAACAAATGATTAAAGATGAAGTATGTTCATTAAATATTTCATCGAAACAACCATCGAT
AGCAGTATTTTCAACAGTTACAACCAATTTATTCAATCATCAAACTTCACCGTTCAATGC
AGATTATGCATTTAATAATATTCGCCAACCAGTTCGTTTCACACAAACAATTACAAATCT
TTACAAACATATCGAATCAAATGATATGGGTAATGAAATTACATTCATTNAAGTTTCACC
ACATCCAACATTACAATATTACTTAAATCAAATGAAATCAACTCAATCAAGTTACTTTAA
TAATGGTAAAAACATTACAATCTATTCACCATTAAATAAAAAGAAGAANNATTATAA
Length of connected seq. 1427
Full length Seq ID -
Full length Seq. -
Length of full length seq. -