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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI760
Library VH
(Link to library)
Clone ID VHI760
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID VHI760P
(Link to Original site)
Representative DNA sequence 
>VHI760 (VHI760Q) /CSM/VH/VHI7-C/VHI760Q.Seq.d/
TTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGT
AAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAAC
TGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTC
AAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATT
CCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAA
GTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGT
TAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGC
TTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTC
TGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAA
AGGAAGTGTTTACTTTAAATACTCXXXXXXXXXXAAAAATGTCTGTTGATGCAAATAAAG
TAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAA
CTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTNGGTT
CNNAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATNCTCCNACTCCAGGAAAA
TTNCAAGAATTGGCTCAAGGCAGTNCNNACAATGATTTANCNTCAATNNATGGTCTTTCA
AAGTTCCAAGTNNTACCAGGAGCTTTTCAATGGGCAGTTGATGTTNAAATTGTCNNCAAA
GNTNATTCAACNGGTGGTTCATANG
sequence update 2002.10.25
Translated Amino Acid sequence 
fkskrysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCLVGS
NVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVNKV
NSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYVVK
GSVYFKY---

---KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCLVGSXC*m*hlg
a**n*xsxsrkixrigsrqxxq*fxxnxwsfkvpsxtrsfsmgs*cxncxqxxfnxwfi
Translated Amino Acid sequence (All Frames) 
Frame A:
fqk*kv*y*klknvc*ck*skillw*klhw*ii*iqqr*nckiqqw**me**ihvmfgwf
kc*m*hlga**n*ysnsrkiprigsrqykq*fnlnkwsfkvpsltrsfsmgs*c*ncqqs
*fncwfi*ndhysips**gclqrw**lcsiansktystrf*nc*pfnsssntyti*lcck
rkcll*il---

---knvc*ck*skillw*klhw*ii*iqqr*nckiqqw**me**ihvmfgxfxmldvtfg
simklxlxlqenxknwlkavxtmixxqxmvfqsskxyqelfngqlmxklsxkxiqxvvhx

Frame B:
fkskrysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCLVGS
NVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVNKV
NSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYVVK
GSVYFKY---

---KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCLVGSXC*m*hlg
a**n*xsxsrkixrigsrqxxq*fxxnxwsfkvpsxtrsfsmgs*cxncxqxxfnxwfi

Frame C:
skvkgivlkikkcllmqik*nsslvktalvnhlnttkvkl*dstmvingminschvwlvq
mldvtfgsimklilqlqensknwlkavqtmi*pq*mvfqssksyqelfngqlmlklstkl
iqllvhmk*pllhtklirllakmvmtlfncqfqnllhqilkllai*qfvkhihhmtml*k
evftlnt---

---kcllmqik*nsslvktalvnhlnttkvkl*dstmvingminschvwxvxnvrcniwe
hneidxptpgkxqelaqgsxxndlxsxxglskfqvxpgafqwavdvxivxkxxstggsx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI760 (VHI760Q) /CSM/VH/VHI7-C/VHI760Q.Seq.d/                       1518   0.0
VHL872 (VHL872Q) /CSM/VH/VHL8-C/VHL872Q.Seq.d/                        983   0.0
VHI219 (VHI219Q) /CSM/VH/VHI2-A/VHI219Q.Seq.d/                        983   0.0
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/                        983   0.0
VHG454 (VHG454Q) /CSM/VH/VHG4-C/VHG454Q.Seq.d/                        983   0.0
VHG402 (VHG402Q) /CSM/VH/VHG4-A/VHG402Q.Seq.d/                        983   0.0
VHB484 (VHB484Q) /CSM/VH/VHB4-D/VHB484Q.Seq.d/                        983   0.0
VHB309 (VHB309Q) /CSM/VH/VHB3-A/VHB309Q.Seq.d/                        983   0.0
VFN638 (VFN638Q) /CSM/VF/VFN6-B/VFN638Q.Seq.d/                        983   0.0
VFM355 (VFM355Q) /CSM/VF/VFM3-C/VFM355Q.Seq.d/                        983   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423256) Dictyostelium discoideum cDNA clone:ddv48h15, 5' ...   957   0.0    1
(U49650) Dictyostelium discoideum calcium-dependent cell adh...   950   0.0    1
(AU076357) Dictyostelium discoideum slug cDNA, clone SSA641.      950   0.0    1
(C94392) Dictyostelium discoideum slug cDNA, clone SSK613.        950   0.0    1
(C91961) Dictyostelium discoideum slug cDNA, clone SSC587.        950   0.0    1
(C91121) Dictyostelium discoideum slug cDNA, clone SSJ652.        950   0.0    1
(BJ443951) Dictyostelium discoideum cDNA clone:ddv54p18, 3' ...   950   0.0    1
(BJ438038) Dictyostelium discoideum cDNA clone:ddv36l06, 3' ...   950   0.0    1
(BJ432722) Dictyostelium discoideum cDNA clone:ddv19e17, 3' ...   950   0.0    1
(BJ430308) Dictyostelium discoideum cDNA clone:ddv6e19, 3' e...   950   0.0    1
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   369   e-101
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   363   6e-99
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    79   3e-13
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    50   1e-04
BX571864_113(BX571864|pid:none) Photorhabdus luminescens subsp. ...    43   0.017
CU207366_3569(CU207366|pid:none) Gramella forsetii KT0803 comple...    34   8.0
protein update 2009. 3.11
PSORT 

 psg: 0.77  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHI760 is cyt
5' end seq. ID VHI760F
5' end seq. 
>VHI760F.Seq
TTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGT
AAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAAC
TGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTC
AAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATT
CCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAA
GTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGT
TAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGC
TTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTC
TGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAA
AGGAAGTGTTTACTTTAAATACTCNNNNNNNNNN
Length of 5' end seq. 574
3' end seq. ID VHI760Z
3' end seq. 
>VHI760Z.Seq
NNNNNNNNNNAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTTCTTTGGTAAAAACT
GCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATTCAACAATGGTGATA
AATGGAATGATAAATTCATGTCATGTTTGGTNGGTTCNNAATGTTAGATGTAACATTTGG
GAGCATAATGAAATTGATNCTCCNACTCCAGGAAAATTNCAAGAATTGGCTCAAGGCAGT
NCNNACAATGATTTANCNTCAATNNATGGTCTTTCAAAGTTCCAAGTNNTACCAGGAGCT
TTTCAATGGGCAGTTGATGTTNAAATTGTCNNCAAAGNTNATTCAACNGGTGGTTCATAN
G
Length of 3' end seq. 361
Connected seq. ID VHI760P
Connected seq. 
>VHI760P.Seq
TTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGT
AAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAAC
TGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTC
AAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATT
CCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAA
GTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGT
TAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGC
TTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTC
TGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAA
AGGAAGTGTTTACTTTAAATACTC----------AAAAATGTCTGTTGATGCAAATAAAG
TAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAA
CTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTNGGTT
CNNAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATNCTCCNACTCCAGGAAAA
TTNCAAGAATTGGCTCAAGGCAGTNCNNACAATGATTTANCNTCAATNNATGGTCTTTCA
AAGTTCCAAGTNNTACCAGGAGCTTTTCAATGGGCAGTTGATGTTNAAATTGTCNNCAAA
GNTNATTCAACNGGTGGTTCATANG
Length of connected seq. 915
Full length Seq ID -
Full length Seq. -
Length of full length seq. -