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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI753
Library VH
(Link to library)
Clone ID VHI753
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16319-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHI753 (VHI753Q) /CSM/VH/VHI7-C/VHI753Q.Seq.d/
AAAGNAAGCTGATCCAGCATTACCATATTTACAAAATACTATCAAATACATTCAATCTCA
AAATTATAAAGGTATTTCAATTTAAACTTTTTTAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
XKLIQHYHIYKILSNTFNLKIIKVFQFKLF*kk---
Translated Amino Acid sequence (All Frames) 
Frame A:
kxs*ssitiftkyyqihsiskl*ryfnlnffkkk---


Frame B:
kxadpalpylqntikyiqsqnykgisi*tflkk---


Frame C:
XKLIQHYHIYKILSNTFNLKIIKVFQFKLF*kk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI753 (VHI753Q) /CSM/VH/VHI7-C/VHI753Q.Seq.d/                        178   1e-44
SLJ872 (SLJ872Q) /CSM/SL/SLJ8-C/SLJ872Q.Seq.d/                        174   2e-43
AHP447 (AHP447Q) /CSM/AH/AHP4-B/AHP447Q.Seq.d/                        163   6e-40
VHK662 (VHK662Q) /CSM/VH/VHK6-C/VHK662Q.Seq.d/                        161   2e-39
VHJ448 (VHJ448Q) /CSM/VH/VHJ4-B/VHJ448Q.Seq.d/                        161   2e-39
VHI863 (VHI863Q) /CSM/VH/VHI8-C/VHI863Q.Seq.d/                        161   2e-39
VHI583 (VHI583Q) /CSM/VH/VHI5-D/VHI583Q.Seq.d/                        161   2e-39
VHG155 (VHG155Q) /CSM/VH/VHG1-C/VHG155Q.Seq.d/                        161   2e-39
VHC748 (VHC748Q) /CSM/VH/VHC7-B/VHC748Q.Seq.d/                        161   2e-39
AHJ343 (AHJ343Q) /CSM/AH/AHJ3-B/AHJ343Q.Seq.d/                        161   2e-39
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423265) Dictyostelium discoideum cDNA clone:ddv48j13, 5' ...   178   2e-41  1
(AU053887) Dictyostelium discoideum slug cDNA, clone SLJ872.      174   4e-40  1
(BJ356789) Dictyostelium discoideum cDNA clone:dda61n12, 3' ...   163   1e-36  1
(BJ443345) Dictyostelium discoideum cDNA clone:ddv52k16, 3' ...   161   6e-36  1
(BJ442307) Dictyostelium discoideum cDNA clone:ddv49p12, 3' ...   161   6e-36  1
(BJ442084) Dictyostelium discoideum cDNA clone:ddv48e21, 3' ...   161   6e-36  1
(BJ442047) Dictyostelium discoideum cDNA clone:ddv48n16, 3' ...   161   6e-36  1
(BJ440428) Dictyostelium discoideum cDNA clone:ddv43m13, 3' ...   161   6e-36  1
(BJ438135) Dictyostelium discoideum cDNA clone:ddv36p11, 3' ...   161   6e-36  1
(BJ353199) Dictyostelium discoideum cDNA clone:dda49f11, 3' ...   161   6e-36  1
dna update 2008.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C24) RecName: Full=Vacuolar sorting protein 35;                    56   5e-07
protein update 2009. 3.11
PSORT 

 psg: 0.80  gvh: 0.24  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for VHI753 is nuc
5' end seq. ID VHI753F
5' end seq. 
>VHI753F.Seq
AAAGNAAGCTGATCCAGCATTACCATATTTACAAAATACTATCAAATACATTCAATCTCA
AAATTATAAAGGTATTTCAATTTAAACTTTTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 113
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -