VHI715
Library VH
(Link to library)
Clone ID VHI715
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11083-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHI715 (VHI715Q) /CSM/VH/VHI7-A/VHI715Q.Seq.d/
XXXXXXXXXXTAGTTTATATACAGTGGTTTTATCATCGAAATTGTCACTACCAGCTAGTC
TTAACTTGAGCCTTCCAGAAGTAGGATCTTATTTTGCAAGTACTTATCTTTTAGATAACA
ATGCAAAAAATTTCTACCTTGGTATCGATTTAGCACCATCCGATAGTAATACACCACGTA
AACTTTCAGTAAATGGTAAAGATTGGACAAGATGTGATTGGATTCAATCATTAAATAAAT
GTACAACCTCTGGTATGTTCTCATTGAGTTCTGTTGATATTCCATTTGGAACTGGTAGTG
GTGGTCAAGATGAAATTTCAATGATTAAAACTTACCTTGGTAATGATGTAACCAATGGTA
TTCCAAGTGCACTCAATATATCATTAGCAGGTCCACATTCATACAAGTTTTATTTATATT
CATTTAATTCAGATTGGACAGATTCAATCATTAATCCAACACCATTATTTTCAATTAAAA
TCAATGGTAAATATCAAGAACCAATAACAAGATCAGCACCAATATATCTTCAATCTAAAA
GATATGGTCCATTCTATTGGAATAATATTAATTCAAATGAACAAGTTTTATCAATTGATT
GGGCAACTGATAATATTAAATATTCAATTCCATTATT
sequence update 2002. 9.10
Translated Amino Acid sequence
---SLYTVVLSSKLSLPASLNLSLPEVGSYFASTYLLDNNAKNFYLGIDLAPSDSNTPRK
LSVNGKDWTRCDWIQSLNKCTTSGMFSLSSVDIPFGTGSGGQDEISMIKTYLGNDVTNGI
PSALNISLAGPHSYKFYLYSFNSDWTDSIINPTPLFSIKINGKYQEPITRSAPIYLQSKR
YGPFYWNNINSNEQVLSIDWATDNIKYSIPL


Translated Amino Acid sequence (All Frames)
Frame A:
---SLYTVVLSSKLSLPASLNLSLPEVGSYFASTYLLDNNAKNFYLGIDLAPSDSNTPRK
LSVNGKDWTRCDWIQSLNKCTTSGMFSLSSVDIPFGTGSGGQDEISMIKTYLGNDVTNGI
PSALNISLAGPHSYKFYLYSFNSDWTDSIINPTPLFSIKINGKYQEPITRSAPIYLQSKR
YGPFYWNNINSNEQVLSIDWATDNIKYSIPL


Frame B:
---vyiqwfyhrnchyqlvlt*afqk*dlilqvlif*itmqkistlvsi*hhpivihhvn
fq*mvkigqdvigfnh*invqplvcsh*vllifhlelvvvvkmkfq*lkltlvmm*pmvf
qvhsiyh*qvhihtsfiyihliqigqiqsliqhhyfqlksmvniknq*qdqhqyifnlkd
mvhsigiiliqmnkfyqligqliilniqfhy


Frame C:
---fiysgfiieivtts*s*lepsrsrilfckylsfr*qckkflpwyrfstir**ytt*t
fskw*rldkm*ldsiik*mynlwyvliefc*ysiwnw*wwsr*nfnd*nlpw**cnqwys
kctqyiisrstfiqvlfifi*frldrfnh*sntiifn*nqw*isrtnnkistnissi*ki
wsille*y*fk*tsfin*lgn**y*ifnsii


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI715 (VHI715Q) /CSM/VH/VHI7-A/VHI715Q.Seq.d/ 1243 0.0
AHH675 (AHH675Q) /CSM/AH/AHH6-D/AHH675Q.Seq.d/ 1211 0.0
AHH402 (AHH402Q) /CSM/AH/AHH4-A/AHH402Q.Seq.d/ 1211 0.0
AHC146 (AHC146Q) /CSM/AH/AHC1-B/AHC146Q.Seq.d/ 1211 0.0
AHB667 (AHB667Q) /CSM/AH/AHB6-C/AHB667Q.Seq.d/ 1203 0.0
AHI759 (AHI759Q) /CSM/AH/AHI7-C/AHI759Q.Seq.d/ 1197 0.0
AHB189 (AHB189Q) /CSM/AH/AHB1-D/AHB189Q.Seq.d/ 1195 0.0
AHA113 (AHA113Q) /CSM/AH/AHA1-A/AHA113Q.Seq.d/ 1187 0.0
VHO873 (VHO873Q) /CSM/VH/VHO8-D/VHO873Q.Seq.d/ 1122 0.0
AHL387 (AHL387Q) /CSM/AH/AHL3-D/AHL387Q.Seq.d/ 1074 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 34 2e-05 14
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces. 36 7e-05 12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 6e-04 11
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 32 0.004 13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 30 0.007 15
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 32 0.008 12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.009 15
BX546480|BX546480.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-175C11. 48 0.014 6
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 32 0.024 13
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 34 0.037 13
dna update 2004. 1.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001176_3406(CP001176|pid:none) Bacillus cereus B4264, complete... 37 0.36
AB303558_4(AB303558|pid:none) Torque teno midi virus DNA, comple... 37 0.48
(Q9RN04) Uncharacterized protein pXO2-28/BXB0027/GBAA_pXO2_0027.... 33 5.3
BC159146_1(BC159146|pid:none) Xenopus tropicalis hypothetical pr... 33 5.3
CP000885_1555(CP000885|pid:none) Clostridium phytofermentans ISD... 33 9.0
CP000112_601(CP000112|pid:none) Desulfovibrio desulfuricans G20,... 33 9.0
CP000885_1669(CP000885|pid:none) Clostridium phytofermentans ISD... 33 9.0
AE002153_10(AE002153|pid:none) Ureaplasma parvum serovar 3 str. ... 33 9.0
EF428065_1(EF428065|pid:none) Uncultured bacterium clone 4348GL2... 33 9.0
U80928_8(U80928|pid:none) Rhizobium etli CFN 42 plasmid symbioti... 33 9.0
protein update 2009. 3.11
PSORT

psg: 0.82 gvh: 0.50 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: mitochondrial
20.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for VHI715 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHI715Z
3' end seq.
>VHI715Z.Seq
NNNNNNNNNNTAGTTTATATACAGTGGTTTTATCATCGAAATTGTCACTACCAGCTAGTC
TTAACTTGAGCCTTCCAGAAGTAGGATCTTATTTTGCAAGTACTTATCTTTTAGATAACA
ATGCAAAAAATTTCTACCTTGGTATCGATTTAGCACCATCCGATAGTAATACACCACGTA
AACTTTCAGTAAATGGTAAAGATTGGACAAGATGTGATTGGATTCAATCATTAAATAAAT
GTACAACCTCTGGTATGTTCTCATTGAGTTCTGTTGATATTCCATTTGGAACTGGTAGTG
GTGGTCAAGATGAAATTTCAATGATTAAAACTTACCTTGGTAATGATGTAACCAATGGTA
TTCCAAGTGCACTCAATATATCATTAGCAGGTCCACATTCATACAAGTTTTATTTATATT
CATTTAATTCAGATTGGACAGATTCAATCATTAATCCAACACCATTATTTTCAATTAAAA
TCAATGGTAAATATCAAGAACCAATAACAAGATCAGCACCAATATATCTTCAATCTAAAA
GATATGGTCCATTCTATTGGAATAATATTAATTCAAATGAACAAGTTTTATCAATTGATT
GGGCAACTGATAATATTAAATATTCAATTCCATTATT
Length of 3' end seq. 637
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -