NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI694
Library VH
(Link to library)
Clone ID VHI694
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16251-1
Original site URL
Representative seq. ID VHI694P
(Link to Original site)
Representative DNA sequence 
>VHI694 (VHI694Q) /CSM/VH/VHI6-D/VHI694Q.Seq.d/
TTTTAGAATTTCCATCATTGAATACCTTTTCAATTGATGTCGATAAAGATTCAATTGATA
ATCTTACATTATTCTTACGTTTAGTTGATCTATCTACAATTGGTGATAGAGAAACTATTG
TTAGAAATAATAAAATTTTTGTTCAAAAGATTTTCAAAGAGCCAAAATTGTTATCACCAT
CAAATAATTACGAAAAGGATACAAATAATTTATATTTGAATACAAATAGTAATTTAGATT
TTTCATTCCAATGCAAAGAGAAATTACCACATGGTTCCGTCGAAATTAAAGTTATGTCAA
CTGGTATCAACTATAAAGATAATCTTTTCTATAGAGGTTTATTACCACAAGAAATCTTTA
CAAAAGGTGATATTTATTCTCCACCATTCGGTTTAGAATGTGCTGGTTATATTACACGTG
TTGCACCAAGTGGCGTTACTCGTTTCAAAGTTGGTGATCAAGTTGTTGGTTTTGCAAGCC
ATTCTTTAAGTTCACTAGCTATTACTCATCAAGATAAAATTGTATTAAAACCTGAAAATA
TTTCATTCAATGAAGCTGCTGXXXXXXXXXXTTTCAATTGAAAAAGATTGGAAATTAGAA
AACTTTATTCTCTTTTCATCAATTGGTGCTATCATTGGTGGTTCAAAACAATGTGCATAT
AGTAGTGCTAATTTAGTATTGGATTCATTATCAAACTATAGAAAGAGTATTGGTCTTGCT
TCAACTTCAATTAATTGGGGTGGTTTGGATGCTGGTGGTGTTGCCGCCACTGATAAATCA
GTCGCAAGTTTCTTAGAGGGTCAAGGTATTTTATTGGTTTCTTTATCAAAGATTTTAGGT
TGTCTTGATTCAGTTTTCCAACCATCTAATTCCCATTTATCAAACTTTATGCTTCCAAGT
TTCAATATTGATAATCTTTTATCTTCTGCACCTCAAATGAAGAGAAAAATGGGTCACCAC
CTAACAAATTATAAAACTTCATCTGCTAGCTCTGATGATTCATTGGGTGATTCCAGTTCT
ACTCAAGCAAAAGTCATTTCTACAATCTCTGAATTATTATCAATTCATCCATCAAAATTA
AATTTAGATACAAGATTAAAAGACTATGGTATTGATTCTTTATTAACAGTACAATTAAAG
AATTGGATAGATAAAGAATTTACAAAGAATTTATTCACTCATTTACAATTATCATCAAGT
AGTATTAATAGTATCATTCAGAGAATTAGTTCAAAATCAACTTCAACATCTACTCCCAAT
CCAACTAACACCACAAAACAAACCGCAACAACAAAAACATAAGTAGTTCAAACAACTCCA
ACTACATTGACACTTCTA
sequence update 2002.10.25
Translated Amino Acid sequence 
LEFPSLNTFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPS
NNYEKDTNNLYLNTNSNLDFSFQCKEKLPHGSVEIKVMSTGINYKDNLFYRGLLPQEIFT
KGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSLAITHQDKIVLKPENI
SFNEAA---

---SIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGG
LDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLPSFNIDNLLS
SAPQMKRKMGHHLTNYKTSSASSDDSLGDSSSTQAKVISTISELLSIHPSKLNLDTRLKD
YGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTTKQT
ATTKT*vvqttpttltll
Translated Amino Acid sequence (All Frames) 
Frame A:
f*nfhh*ipfqlmsikiqliilhysyv*liylqlviekllleiikflfkrfsksqncyhh
qiitkriqiiyi*iqivi*ifhsnakrnyhmvpsklklcqlvstikiifsievyyhkksl
qkvifilhhsv*nvlvilhvlhqvallvsklvikllvlqail*vh*lllikikly*nlki
fhsmkll---

---fqlkkign*ktlfsfhqlvlslvvqnnvhivvli*ywihyqtiervlvllqlqligv
vwmlvvlpplinqsqvs*rvkvfywflyqrf*vvliqfsnhlipiyqtlcfqvsiliify
llhlk*rekwvtt*qiiklhllalmihwvipvllkqksflqslnyyqfihqn*i*iqd*k
tmvlily*qyn*rig*iknlqriysliynyhqvvlivsfrelvqnqlqhllpiqltpqnk
pqqqkhk*fkqlqlh*hf

Frame B:
frisiieylfn*cr*rfn**syiiltfs*siynw**rnyc*k**nfcskdfqrakiviti
k*lrkgyk*fifeyk**frffipmqreittwfrrn*syvnwyql*r*sfl*rfittrnly
kr*ylfstirfrmcwlyytcctkwrysfqsw*sscwfckpffkftsyyssr*ncikt*ky
fiq*sc---

---fn*krleirklyslfinwcyhwwfktmci**c*fsigfiikl*keywscfnfn*lgw
fgcwwccrh**isrkflrgsryfigffikdfrls*fsfpti*fpfiklyaskfqy**sfi
fctsneekngsppnkl*nfic*l**fig*fqfysskshfynl*iiinssikikfrykikr
lwy*ffinstikeldr*riykefihsftiiik*y**yhsen*fkinfniysqsn*hhktn
rnnknisssnnsnyidts

Frame C:
LEFPSLNTFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPS
NNYEKDTNNLYLNTNSNLDFSFQCKEKLPHGSVEIKVMSTGINYKDNLFYRGLLPQEIFT
KGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSLAITHQDKIVLKPENI
SFNEAA---

---SIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGG
LDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLPSFNIDNLLS
SAPQMKRKMGHHLTNYKTSSASSDDSLGDSSSTQAKVISTISELLSIHPSKLNLDTRLKD
YGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTTKQT
ATTKT*vvqttpttltll
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI694 (VHI694Q) /CSM/VH/VHI6-D/VHI694Q.Seq.d/                       2593   0.0
VHH639 (VHH639Q) /CSM/VH/VHH6-B/VHH639Q.Seq.d/                       1505   0.0
VHB382 (VHB382Q) /CSM/VH/VHB3-D/VHB382Q.Seq.d/                       1505   0.0
VHB174 (VHB174Q) /CSM/VH/VHB1-D/VHB174Q.Seq.d/                       1505   0.0
VHO568 (VHO568Q) /CSM/VH/VHO5-C/VHO568Q.Seq.d/                       1499   0.0
VHD102 (VHD102Q) /CSM/VH/VHD1-A/VHD102Q.Seq.d/                       1497   0.0
VHN370 (VHN370Q) /CSM/VH/VHN3-C/VHN370Q.Seq.d/                       1487   0.0
VHB109 (VHB109Q) /CSM/VH/VHB1-A/VHB109Q.Seq.d/                       1485   0.0
VHA188 (VHA188Q) /CSM/VH/VHA1-D/VHA188Q.Seq.d/                       1483   0.0
VHH622 (VHH622Q) /CSM/VH/VHH6-A/VHH622Q.Seq.d/                       1477   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442118) Dictyostelium discoideum cDNA clone:ddv48k24, 3' ...  1320   0.0    1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...  1304   0.0    1
(BJ445768) Dictyostelium discoideum cDNA clone:ddv60g17, 3' ...  1304   0.0    1
(BJ441341) Dictyostelium discoideum cDNA clone:ddv46m10, 3' ...  1304   0.0    1
(BJ438461) Dictyostelium discoideum cDNA clone:ddv37c01, 3' ...  1304   0.0    1
(BJ437286) Dictyostelium discoideum cDNA clone:ddv33d21, 3' ...  1304   0.0    1
(BJ437279) Dictyostelium discoideum cDNA clone:ddv33c19, 3' ...  1304   0.0    1
(BJ437031) Dictyostelium discoideum cDNA clone:ddv33a03, 3' ...  1304   0.0    1
(BJ444858) Dictyostelium discoideum cDNA clone:ddv57l17, 3' ...  1302   0.0    1
(BJ441249) Dictyostelium discoideum cDNA clone:ddv46k06, 3' ...  1296   0.0    1
dna update 2008.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869W9) RecName: Full=Probable polyketide synthase 16;         ...   370   e-101
(Q869X2) RecName: Full=Probable polyketide synthase 17;         ...   367   e-100
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...   149   2e-34
(Q54KU5) RecName: Full=Probable polyketide synthase 24;         ...   146   1e-33
AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso...   144   7e-33
(Q54KU3) RecName: Full=Probable polyketide synthase 25;         ...   141   5e-32
(Q54TW0) RecName: Full=Probable polyketide synthase 18;         ...   140   8e-32
AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...   137   1e-30
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso...   135   3e-30
(Q54ED6) RecName: Full=Probable polyketide synthase 41;         ...   129   2e-28
protein update 2009. 7.14
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.31  top: 0.50  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHI694 is cyt
5' end seq. ID VHI694F
5' end seq. 
>VHI694F.Seq
TTTTAGAATTTCCATCATTGAATACCTTTTCAATTGATGTCGATAAAGATTCAATTGATA
ATCTTACATTATTCTTACGTTTAGTTGATCTATCTACAATTGGTGATAGAGAAACTATTG
TTAGAAATAATAAAATTTTTGTTCAAAAGATTTTCAAAGAGCCAAAATTGTTATCACCAT
CAAATAATTACGAAAAGGATACAAATAATTTATATTTGAATACAAATAGTAATTTAGATT
TTTCATTCCAATGCAAAGAGAAATTACCACATGGTTCCGTCGAAATTAAAGTTATGTCAA
CTGGTATCAACTATAAAGATAATCTTTTCTATAGAGGTTTATTACCACAAGAAATCTTTA
CAAAAGGTGATATTTATTCTCCACCATTCGGTTTAGAATGTGCTGGTTATATTACACGTG
TTGCACCAAGTGGCGTTACTCGTTTCAAAGTTGGTGATCAAGTTGTTGGTTTTGCAAGCC
ATTCTTTAAGTTCACTAGCTATTACTCATCAAGATAAAATTGTATTAAAACCTGAAAATA
TTTCATTCAATGAAGCTGCTGNNNNNNNNNN
Length of 5' end seq. 571
3' end seq. ID VHI694Z
3' end seq. 
>VHI694Z.Seq
NNNNNNNNNNTTTCAATTGAAAAAGATTGGAAATTAGAAAACTTTATTCTCTTTTCATCA
ATTGGTGCTATCATTGGTGGTTCAAAACAATGTGCATATAGTAGTGCTAATTTAGTATTG
GATTCATTATCAAACTATAGAAAGAGTATTGGTCTTGCTTCAACTTCAATTAATTGGGGT
GGTTTGGATGCTGGTGGTGTTGCCGCCACTGATAAATCAGTCGCAAGTTTCTTAGAGGGT
CAAGGTATTTTATTGGTTTCTTTATCAAAGATTTTAGGTTGTCTTGATTCAGTTTTCCAA
CCATCTAATTCCCATTTATCAAACTTTATGCTTCCAAGTTTCAATATTGATAATCTTTTA
TCTTCTGCACCTCAAATGAAGAGAAAAATGGGTCACCACCTAACAAATTATAAAACTTCA
TCTGCTAGCTCTGATGATTCATTGGGTGATTCCAGTTCTACTCAAGCAAAAGTCATTTCT
ACAATCTCTGAATTATTATCAATTCATCCATCAAAATTAAATTTAGATACAAGATTAAAA
GACTATGGTATTGATTCTTTATTAACAGTACAATTAAAGAATTGGATAGATAAAGAATTT
ACAAAGAATTTATTCACTCATTTACAATTATCATCAAGTAGTATTAATAGTATCATTCAG
AGAATTAGTTCAAAATCAACTTCAACATCTACTCCCAATCCAACTAACACCACAAAACAA
ACCGCAACAACAAAAACATAAGTAGTTCAAACAACTCCAACTACATTGACACTTCTA
Length of 3' end seq. 777
Connected seq. ID VHI694P
Connected seq. 
>VHI694P.Seq
TTTTAGAATTTCCATCATTGAATACCTTTTCAATTGATGTCGATAAAGATTCAATTGATA
ATCTTACATTATTCTTACGTTTAGTTGATCTATCTACAATTGGTGATAGAGAAACTATTG
TTAGAAATAATAAAATTTTTGTTCAAAAGATTTTCAAAGAGCCAAAATTGTTATCACCAT
CAAATAATTACGAAAAGGATACAAATAATTTATATTTGAATACAAATAGTAATTTAGATT
TTTCATTCCAATGCAAAGAGAAATTACCACATGGTTCCGTCGAAATTAAAGTTATGTCAA
CTGGTATCAACTATAAAGATAATCTTTTCTATAGAGGTTTATTACCACAAGAAATCTTTA
CAAAAGGTGATATTTATTCTCCACCATTCGGTTTAGAATGTGCTGGTTATATTACACGTG
TTGCACCAAGTGGCGTTACTCGTTTCAAAGTTGGTGATCAAGTTGTTGGTTTTGCAAGCC
ATTCTTTAAGTTCACTAGCTATTACTCATCAAGATAAAATTGTATTAAAACCTGAAAATA
TTTCATTCAATGAAGCTGCTG----------TTTCAATTGAAAAAGATTGGAAATTAGAA
AACTTTATTCTCTTTTCATCAATTGGTGCTATCATTGGTGGTTCAAAACAATGTGCATAT
AGTAGTGCTAATTTAGTATTGGATTCATTATCAAACTATAGAAAGAGTATTGGTCTTGCT
TCAACTTCAATTAATTGGGGTGGTTTGGATGCTGGTGGTGTTGCCGCCACTGATAAATCA
GTCGCAAGTTTCTTAGAGGGTCAAGGTATTTTATTGGTTTCTTTATCAAAGATTTTAGGT
TGTCTTGATTCAGTTTTCCAACCATCTAATTCCCATTTATCAAACTTTATGCTTCCAAGT
TTCAATATTGATAATCTTTTATCTTCTGCACCTCAAATGAAGAGAAAAATGGGTCACCAC
CTAACAAATTATAAAACTTCATCTGCTAGCTCTGATGATTCATTGGGTGATTCCAGTTCT
ACTCAAGCAAAAGTCATTTCTACAATCTCTGAATTATTATCAATTCATCCATCAAAATTA
AATTTAGATACAAGATTAAAAGACTATGGTATTGATTCTTTATTAACAGTACAATTAAAG
AATTGGATAGATAAAGAATTTACAAAGAATTTATTCACTCATTTACAATTATCATCAAGT
AGTATTAATAGTATCATTCAGAGAATTAGTTCAAAATCAACTTCAACATCTACTCCCAAT
CCAACTAACACCACAAAACAAACCGCAACAACAAAAACATAAGTAGTTCAAACAACTCCA
ACTACATTGACACTTCTA
Length of connected seq. 1328
Full length Seq ID -
Full length Seq. -
Length of full length seq. -