VHI684
Library VH
(Link to library)
Clone ID VHI684
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12497-1
Original site URL
Representative seq. ID VHI684P
(Link to Original site)
Representative DNA sequence
>VHI684 (VHI684Q) /CSM/VH/VHI6-D/VHI684Q.Seq.d/
AGATCAACGTTATTACATTTTAAATGCAATTGAAGCATTGGTTTCAATCACTGATTCTAT
AAATTTAAATACAATTTTTAATTCATTAATTACAAAATTAGTTGAAGCATTAACTTTAGA
AGGTATTGAAAAGAAACCAACTCAAAATTCAATGGATACTACAACTACAACTACTACAAC
CACCACACCAAAAGAAAAAACAAAGAAATATTATTTAACAGATTTAACAATTGGTTTCGT
TAAACATTTAGATGAAGAGAATATTAAAGTTTTATATAAAATTATTAAACCACAATTGAA
ATGTTCTGATCCAGGTTTACAAAAGAGATCTTATAAGATTTTAGTAAAGATTAGTGAATA
TCATGAAAGTTTTATTCTTCAAAATTTAACAAAGATTAAAGCATTATTAGTTAGTAATTT
AATGCAATCACCATCAACAATTAAGAAAACTCGTTTAAAATGTTTAAGAGAAATTATTAT
CTCCTTAACTAAATCTTCATATAATAAACATTTATTAACTGAAGAAGAATTAGAATTAGT
TGCTATTAATGAAAATGAAAAACAATTAGAAAATACTACTACAACTACTACAACTACTAC
AACAACAACTACTACTACAACTACAAGTACAGATAATAAACCAAXXXXXXXXXXCNCNAC
AAGAACAACTGNTNANTCTGNTNGTGGTGGTGGTGGTGGTGGTNANTCAGNCATNGGNGG
CGGTNANTCAGCTGANTCANCTCGTNGTACTAATAATAATAATAATAATNAAGGTNGTAN
TNNNNCTGCT
sequence update 2002.10.25
Translated Amino Acid sequence
DQRYYILNAIEALVSITDSINLNTIFNSLITKLVEALTLEGIEKKPTQNSMDTTTTTTTT
TTPKEKTKKYYLTDLTIGFVKHLDEENIKVLYKIIKPQLKCSDPGLQKRSYKILVKISEY
HESFILQNLTKIKALLVSNLMQSPSTIKKTRLKCLREIIISLTKSSYNKHLLTEEELELV
AINENEKQLENTTTTTTTTTTTTTTTTTSTDNKP---

---XTRTTXXSXXGGGGGGXSXXGGGXSAXSXRXTNNNNNNXGXXXXA


Translated Amino Acid sequence (All Frames)
Frame A:
rstllhfkcn*sigfnh*fykfkynf*finykis*sinfrry*ketnskfngyynynyyn
hhtkrknkeilfnrfnnwfr*tfr*rey*sfi*ny*ttiemf*srftkeil*dfskd**i
s*kfysskfnkd*siis**fnaitinn*ensfkmfkrnyylln*ifi**tfin*rriris
cy**k*ktirkyyynyynyynnnyyynykyr**t---

---xxknnxxxxxwwwwwwxxxhxxrxxs*xxsxy******xrxxxxc

Frame B:
DQRYYILNAIEALVSITDSINLNTIFNSLITKLVEALTLEGIEKKPTQNSMDTTTTTTTT
TTPKEKTKKYYLTDLTIGFVKHLDEENIKVLYKIIKPQLKCSDPGLQKRSYKILVKISEY
HESFILQNLTKIKALLVSNLMQSPSTIKKTRLKCLREIIISLTKSSYNKHLLTEEELELV
AINENEKQLENTTTTTTTTTTTTTTTTTSTDNKP---

---XTRTTXXSXXGGGGGGXSXXGGGXSAXSXRXTNNNNNNXGXXXXA

Frame C:
invitf*mqlkhwfqslil*i*iqflih*lqn*lkh*l*kvlkrnqlkiqwilqlqllqp
phqkkkqrnii*qi*qlvslni*mkrilkfyikllnhn*nvliqvykrdlirf**rlvni
mkvlffki*qrlkhy*lvi*cnhhqqlrklv*nv*ekllsp*lnlhiiniy*lkkn*n*l
llmkmknn*killqllqllqqqlllqlqvqiinq---

---xqeqlxxlxvvvvvvvxqxxxavxqlxxlvvliiiiixkvvxxl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI684 (VHI684Q) /CSM/VH/VHI6-D/VHI684Q.Seq.d/ 1136 0.0
AHK202 (AHK202Q) /CSM/AH/AHK2-A/AHK202Q.Seq.d/ 1037 0.0
CHO241 (CHO241Q) /CSM/CH/CHO2-B/CHO241Q.Seq.d/ 311 9e-84
VHF878 (VHF878Q) /CSM/VH/VHF8-D/VHF878Q.Seq.d/ 234 2e-60
VFK752 (VFK752Q) /CSM/VF/VFK7-C/VFK752Q.Seq.d/ 48 2e-04
VFH582 (VFH582Q) /CSM/VF/VFH5-D/VFH582Q.Seq.d/ 48 2e-04
VFF270 (VFF270Q) /CSM/VF/VFF2-C/VFF270Q.Seq.d/ 48 2e-04
SLF206 (SLF206Q) /CSM/SL/SLF2-A/SLF206Q.Seq.d/ 48 2e-04
SFH883 (SFH883Q) /CSM/SF/SFH8-D/SFH883Q.Seq.d/ 48 2e-04
SFD237 (SFD237Q) /CSM/SF/SFD2-B/SFD237Q.Seq.d/ 48 2e-04

own update 2002.12.31
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ423326) Dictyostelium discoideum cDNA clone:ddv48g22, 5' ... 1136 0.0 1
(BJ335626) Dictyostelium discoideum cDNA clone:dda51c02, 5' ... 1037 0.0 1
(BJ369351) Dictyostelium discoideum cDNA clone:ddc50a12, 5' ... 311 2e-80 1
(BJ421506) Dictyostelium discoideum cDNA clone:ddv42l20, 5' ... 234 4e-57 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 44 4e-07 15
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 44 2e-05 20
(AC112117) Rattus norvegicus clone CH230-163M8, *** SEQUENCI... 56 0.002 1
(BX275242) Gallus gallus multi-tissues normalized and once-s... 54 0.008 1
(BX275241) Gallus gallus multi-tissues normalized and once-s... 54 0.008 1
(BG712539) pgl1n.pk012.p3 Normalized Liver Library Gallus ga... 54 0.008 1
dna update 2008.11.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC077147_1(BC077147|pid:none) Danio rerio ribosomal RNA processi... 60 1e-07
(Q5ZKD5) RecName: Full=RRP12-like protein; &AJ720149_1(AJ720149... 55 3e-06
BC056232_1(BC056232|pid:none) Mus musculus ribosomal RNA process... 54 6e-06
(Q6P5B0) RecName: Full=RRP12-like protein; &AK146550_1(AK146550... 54 6e-06
AK122346_1(AK122346|pid:none) Mus musculus premature mRNA for mK... 54 6e-06
AB014590_1(AB014590|pid:none) Homo sapiens mRNA for KIAA0690 pro... 54 8e-06
AK022496_1(AK022496|pid:none) Homo sapiens cDNA FLJ12434 fis, cl... 54 8e-06
AK131283_1(AK131283|pid:none) Homo sapiens cDNA FLJ16235 fis, cl... 54 8e-06
BC012745_1(BC012745|pid:none) Homo sapiens ribosomal RNA process... 54 8e-06
(Q5JTH9) RecName: Full=RRP12-like protein; &AL355490_5(AL355490... 54 8e-06
protein update 2009. 7.14
PSORT

psg: 0.75 gvh: 0.43 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHI684 is cyt

5' end seq. ID VHI684F
5' end seq.
>VHI684F.Seq
AGATCAACGTTATTACATTTTAAATGCAATTGAAGCATTGGTTTCAATCACTGATTCTAT
AAATTTAAATACAATTTTTAATTCATTAATTACAAAATTAGTTGAAGCATTAACTTTAGA
AGGTATTGAAAAGAAACCAACTCAAAATTCAATGGATACTACAACTACAACTACTACAAC
CACCACACCAAAAGAAAAAACAAAGAAATATTATTTAACAGATTTAACAATTGGTTTCGT
TAAACATTTAGATGAAGAGAATATTAAAGTTTTATATAAAATTATTAAACCACAATTGAA
ATGTTCTGATCCAGGTTTACAAAAGAGATCTTATAAGATTTTAGTAAAGATTAGTGAATA
TCATGAAAGTTTTATTCTTCAAAATTTAACAAAGATTAAAGCATTATTAGTTAGTAATTT
AATGCAATCACCATCAACAATTAAGAAAACTCGTTTAAAATGTTTAAGAGAAATTATTAT
CTCCTTAACTAAATCTTCATATAATAAACATTTATTAACTGAAGAAGAATTAGAATTAGT
TGCTATTAATGAAAATGAAAAACAATTAGAAAATACTACTACAACTACTACAACTACTAC
AACAACAACTACTACTACAACTACAAGTACAGATAATAAACCAANNNNNNNNNN
Length of 5' end seq. 654
3' end seq. ID VHI684Z
3' end seq.
>VHI684Z.Seq
NNNNNNNNNNCNCNACAAGAACAACTGNTNANTCTGNTNGTGGTGGTGGTGGTGGTGGTN
ANTCAGNCATNGGNGGCGGTNANTCAGCTGANTCANCTCGTNGTACTAATAATAATAATA
ATAATNAAGGTNGTANTNNNNCTGCT
Length of 3' end seq. 146
Connected seq. ID VHI684P
Connected seq.
>VHI684P.Seq
AGATCAACGTTATTACATTTTAAATGCAATTGAAGCATTGGTTTCAATCACTGATTCTAT
AAATTTAAATACAATTTTTAATTCATTAATTACAAAATTAGTTGAAGCATTAACTTTAGA
AGGTATTGAAAAGAAACCAACTCAAAATTCAATGGATACTACAACTACAACTACTACAAC
CACCACACCAAAAGAAAAAACAAAGAAATATTATTTAACAGATTTAACAATTGGTTTCGT
TAAACATTTAGATGAAGAGAATATTAAAGTTTTATATAAAATTATTAAACCACAATTGAA
ATGTTCTGATCCAGGTTTACAAAAGAGATCTTATAAGATTTTAGTAAAGATTAGTGAATA
TCATGAAAGTTTTATTCTTCAAAATTTAACAAAGATTAAAGCATTATTAGTTAGTAATTT
AATGCAATCACCATCAACAATTAAGAAAACTCGTTTAAAATGTTTAAGAGAAATTATTAT
CTCCTTAACTAAATCTTCATATAATAAACATTTATTAACTGAAGAAGAATTAGAATTAGT
TGCTATTAATGAAAATGAAAAACAATTAGAAAATACTACTACAACTACTACAACTACTAC
AACAACAACTACTACTACAACTACAAGTACAGATAATAAACCAA----------CNCNAC
AAGAACAACTGNTNANTCTGNTNGTGGTGGTGGTGGTGGTGGTNANTCAGNCATNGGNGG
CGGTNANTCAGCTGANTCANCTCGTNGTACTAATAATAATAATAATAATNAAGGTNGTAN
TNNNNCTGCT
Length of connected seq. 780
Full length Seq ID -
Full length Seq. -
Length of full length seq. -