VHI673
Library VH
(Link to library)
Clone ID VHI673
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11070-1
Original site URL
Representative seq. ID VHI673P
(Link to Original site)
Representative DNA sequence
>VHI673 (VHI673Q) /CSM/VH/VHI6-D/VHI673Q.Seq.d/
TTTTAATCCAGTACCACAACAAAAACCAGTGGAACCTGAAGTTGTAATTCAAAAACCAGT
TGAACCAGTTGTTGTAGTTCAAAAAACACCAGTTGTCCAACAACCACCAGTTTCAACTTA
TAAACATACTTTTAATCCAGTACCACAACAAAAACCAGCTGAACCAGTTGTAGTTCAAAA
ACCAGTTGAGCCAGTTGTAGTTCAAAAACCAGTTGTTGAAGTTCAAAAATCACCAGTCGT
TCAACAACAACCAACAACATCAACTTATAAACATACTTTTAATCCAGTACCACAACAAAA
ACCAGCTGAATCAGTTGTTGTTCAAAAACCAGCTGAACCAGTTGTAATTCAAAAACCACC
AGTTGAACCAGTTGTAGTTCAAAAATCACCAGTTGTTCAACAACAACCAACAACATCAAC
TTATAAACATGTATTTAATCCAGTACAACAACAACAACAACAAACTACTCAATCTACAAC
AGTTAAACAACCAGAAATACCAAAAGTTGTAGAAGAACCAAAGAAAGTAGAACCAACACC
AACACCAAAACCATTACCAAAACCAGAACCAACAATTGTTATTCCAACTCAAGTTAAACA
ACCAGAAATACCAAAAGTTGTAGAAGAACCAAAGAAAGTAGAACXXXXXXXXXXATTCTC
AAAGAATATCTCATCGAAATCTTTAAATAGCAATGGTAGATCTAAATTGGTTGAATTTGA
AGAAGGTAAAGAATCTGAAGAATTCTTTAAACTTTTAGGTGGTCGTCAACCATATCCATT
ATCAAAAACCACTTCAAGAGTTGAACCACGTCTTTATCATTGTACTGTTGGTTCTGGTGC
TTTTGTTGTAGATGAAGTCACTTCTTTTGCTCAAGAGGATTTACTTCAAGAGGATGTTTT
CATCGTTGATGGTATCGAACAAATTTTCATTTGGATCGGTACTGAAACCACTGAAACTGA
ACGTAAATCTTCAATGGAAGTAGCAGTTGAATACTCTTCAACTTTACCATCACCAAGAAA
ACAAAATATTCCCGTCTATCTCACTTATCATGGTAAAGAACCTTACATTTTCACAAGCCT
ATTCCATGGTTGGGACTTTTCAAAGAGAGTCATTCCAACTATCTCTTTTGATCAAGATTT
ACTTTTAGCAAAGGAAATATTAGAACTTTATACTAAAAAATATACATATGATCAATTAGT
AAAGAAACAATATCCAAAAGGTATAGATGGTTCTCGTTTAGAAGAATATTTATCTGATGA
AGAATTCATTTCAATTTTCAAGATAACTCTTGCTCAATTTAAAACTTTATCTTTA
sequence update 2002.10.25
Translated Amino Acid sequence
FNPVPQQKPVEPEVVIQKPVEPVVVVQKTPVVQQPPVSTYKHTFNPVPQQKPAEPVVVQK
PVEPVVVQKPVVEVQKSPVVQQQPTTSTYKHTFNPVPQQKPAESVVVQKPAEPVVIQKPP
VEPVVVQKSPVVQQQPTTSTYKHVFNPVQQQQQQTTQSTTVKQPEIPKVVEEPKKVEPTP
TPKPLPKPEPTIVIPTQVKQPEIPKVVEEPKKVE---

---FSKNISSKSLNSNGRSKLVEFEEGKESEEFFKLLGGRQPYPLSKTTSRVEPRLYHCT
VGSGAFVVDEVTSFAQEDLLQEDVFIVDGIEQIFIWIGTETTETERKSSMEVAVEYSSTL
PSPRKQNIPVYLTYHGKEPYIFTSLFHGWDFSKRVIPTISFDQDLLLAKEILELYTKKYT
YDQLVKKQYPKGIDGSRLEEYLSDEEFISIFKITLAQFKTLSL


Translated Amino Acid sequence (All Frames)
Frame A:
f*sstttktsgt*scnskts*tsccsskntscptttsfnl*tyf*sstttkts*tscssk
ts*ascssktsc*sskitsrstttnninl*tyf*sstttkts*isccskts*tscnsktt
s*tscsskitscstttnninl*tci*ssttttttnysiyns*ttrntkscrrtkesrtnt
ntktitktrtnncysnss*ttrntkscrrtkesr---

---ilkeylieifk*qw*i*ig*i*rr*ri*ril*tfrwsstisiiknhfks*ttslsly
cwfwcfccr*shffcsrgftsrgcfhr*wyrtnfhldry*nh*n*t*ifngsss*ilfnf
titkktkysrlshlsw*rtlhfhkpipwlglfkeshsnylf*srftfskgnirtly*kiy
i*sisketiskryrwfsfrrifi**rihfnfqdnscsi*nfif

Frame B:
FNPVPQQKPVEPEVVIQKPVEPVVVVQKTPVVQQPPVSTYKHTFNPVPQQKPAEPVVVQK
PVEPVVVQKPVVEVQKSPVVQQQPTTSTYKHTFNPVPQQKPAESVVVQKPAEPVVIQKPP
VEPVVVQKSPVVQQQPTTSTYKHVFNPVQQQQQQTTQSTTVKQPEIPKVVEEPKKVEPTP
TPKPLPKPEPTIVIPTQVKQPEIPKVVEEPKKVE---

---FSKNISSKSLNSNGRSKLVEFEEGKESEEFFKLLGGRQPYPLSKTTSRVEPRLYHCT
VGSGAFVVDEVTSFAQEDLLQEDVFIVDGIEQIFIWIGTETTETERKSSMEVAVEYSSTL
PSPRKQNIPVYLTYHGKEPYIFTSLFHGWDFSKRVIPTISFDQDLLLAKEILELYTKKYT
YDQLVKKQYPKGIDGSRLEEYLSDEEFISIFKITLAQFKTLSL

Frame C:
liqyhnknqwnlkl*fknqlnqll*fkkhqlsnnhqfqlinilliqyhnknqlnql*fkn
qlsql*fknqllkfknhqsfnnnqqhqlinilliqyhnknqlnqllfknqlnql*fknhq
lnql*fknhqlfnnnqqhqlinmyliqynnnnnkllnlqqlnnqkyqkl*knqrk*nqhq
hqnhyqnqnqqllfqlklnnqkyqkl*knqrk*n---

---sqrishrnl*iamvdlnwlnlkkvknlknslnf*vvvnhihyqkplqelnhvfiivl
lvlvlll*mksllllkriyfkrmfsslmvsnkfsfgsvlkplklnvnlqwk*qlntlqly
hhqenkifpsislimvknltfsqaysmvgtfqresfqlsllikiyf*qrky*nfilknih
min**rnniqkv*mvlv*kniylmknsfqfsr*lllnlklyl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI673 (VHI673Q) /CSM/VH/VHI6-D/VHI673Q.Seq.d/ 1407 0.0
SHA526 (SHA526Q) /CSM/SH/SHA5-B/SHA526Q.Seq.d/ 1310 0.0
CHL780 (CHL780Q) /CSM/CH/CHL7-D/CHL780Q.Seq.d/ 1310 0.0
AHO473 (AHO473Q) /CSM/AH/AHO4-D/AHO473Q.Seq.d/ 1310 0.0
AHM353 (AHM353Q) /CSM/AH/AHM3-C/AHM353Q.Seq.d/ 1310 0.0
AHM312 (AHM312Q) /CSM/AH/AHM3-A/AHM312Q.Seq.d/ 1310 0.0
AHE220 (AHE220Q) /CSM/AH/AHE2-A/AHE220Q.Seq.d/ 1310 0.0
AHD670 (AHD670Q) /CSM/AH/AHD6-C/AHD670Q.Seq.d/ 1310 0.0
SHG744 (SHG744Q) /CSM/SH/SHG7-B/SHG744Q.Seq.d/ 1294 0.0
AFO518 (AFO518Q) /CSM/AF/AFO5-A/AFO518Q.Seq.d/ 1294 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ442063) Dictyostelium discoideum cDNA clone:ddv48a20, 3' ... 1310 0.0 1
(BJ403478) Dictyostelium discoideum cDNA clone:dds25c07, 3' ... 1310 0.0 1
(BJ382815) Dictyostelium discoideum cDNA clone:ddc45p19, 3' ... 1310 0.0 1
(BJ356251) Dictyostelium discoideum cDNA clone:dda59b20, 3' ... 1310 0.0 1
(BJ355055) Dictyostelium discoideum cDNA clone:dda55j13, 3' ... 1310 0.0 1
(BJ354891) Dictyostelium discoideum cDNA clone:dda55h03, 3' ... 1310 0.0 1
(BJ350203) Dictyostelium discoideum cDNA clone:dda39g06, 3' ... 1310 0.0 1
(BJ350087) Dictyostelium discoideum cDNA clone:dda38k18, 3' ... 1310 0.0 1
(BJ407062) Dictyostelium discoideum cDNA clone:dds37h11, 3' ... 1294 0.0 1
(BJ346151) Dictyostelium discoideum cDNA clone:dda30c05, 3' ... 1294 0.0 1
dna update 2008.11.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC135895_1(BC135895|pid:none) Xenopus tropicalis hypothetical pr... 112 2e-23
BC111730_1(BC111730|pid:none) Homo sapiens advillin, mRNA (cDNA ... 110 9e-23
(O75366) RecName: Full=Advillin; AltName: Full=p92; &AK314362_1... 110 9e-23
AF041449_1(AF041449|pid:none) Homo sapiens advillin mRNA, comple... 110 9e-23
AK154851_1(AK154851|pid:none) Mus musculus NOD-derived CD11c +ve... 109 3e-22
AF099929_1(AF099929|pid:none) Rattus norvegicus pervin mRNA, com... 108 4e-22
BC054960_1(BC054960|pid:none) Xenopus laevis villin 1, mRNA (cDN... 108 4e-22
BC168981_1(BC168981|pid:none) Rattus norvegicus villin 1, mRNA (... 105 4e-21
(P09327) RecName: Full=Villin-1; 105 5e-21
A07400_1(A07400|pid:none) H.sapiens DNA for villin. &A31642(A31... 105 5e-21
protein update 2009. 7.13
PSORT

psg: 0.62 gvh: 0.42 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHI673 is cyt

5' end seq. ID VHI673F
5' end seq.
>VHI673F.Seq
TTTTAATCCAGTACCACAACAAAAACCAGTGGAACCTGAAGTTGTAATTCAAAAACCAGT
TGAACCAGTTGTTGTAGTTCAAAAAACACCAGTTGTCCAACAACCACCAGTTTCAACTTA
TAAACATACTTTTAATCCAGTACCACAACAAAAACCAGCTGAACCAGTTGTAGTTCAAAA
ACCAGTTGAGCCAGTTGTAGTTCAAAAACCAGTTGTTGAAGTTCAAAAATCACCAGTCGT
TCAACAACAACCAACAACATCAACTTATAAACATACTTTTAATCCAGTACCACAACAAAA
ACCAGCTGAATCAGTTGTTGTTCAAAAACCAGCTGAACCAGTTGTAATTCAAAAACCACC
AGTTGAACCAGTTGTAGTTCAAAAATCACCAGTTGTTCAACAACAACCAACAACATCAAC
TTATAAACATGTATTTAATCCAGTACAACAACAACAACAACAAACTACTCAATCTACAAC
AGTTAAACAACCAGAAATACCAAAAGTTGTAGAAGAACCAAAGAAAGTAGAACCAACACC
AACACCAAAACCATTACCAAAACCAGAACCAACAATTGTTATTCCAACTCAAGTTAAACA
ACCAGAAATACCAAAAGTTGTAGAAGAACCAAAGAAAGTAGAACNNNNNNNNNN
Length of 5' end seq. 654
3' end seq. ID VHI673Z
3' end seq.
>VHI673Z.Seq
NNNNNNNNNNATTCTCAAAGAATATCTCATCGAAATCTTTAAATAGCAATGGTAGATCTA
AATTGGTTGAATTTGAAGAAGGTAAAGAATCTGAAGAATTCTTTAAACTTTTAGGTGGTC
GTCAACCATATCCATTATCAAAAACCACTTCAAGAGTTGAACCACGTCTTTATCATTGTA
CTGTTGGTTCTGGTGCTTTTGTTGTAGATGAAGTCACTTCTTTTGCTCAAGAGGATTTAC
TTCAAGAGGATGTTTTCATCGTTGATGGTATCGAACAAATTTTCATTTGGATCGGTACTG
AAACCACTGAAACTGAACGTAAATCTTCAATGGAAGTAGCAGTTGAATACTCTTCAACTT
TACCATCACCAAGAAAACAAAATATTCCCGTCTATCTCACTTATCATGGTAAAGAACCTT
ACATTTTCACAAGCCTATTCCATGGTTGGGACTTTTCAAAGAGAGTCATTCCAACTATCT
CTTTTGATCAAGATTTACTTTTAGCAAAGGAAATATTAGAACTTTATACTAAAAAATATA
CATATGATCAATTAGTAAAGAAACAATATCCAAAAGGTATAGATGGTTCTCGTTTAGAAG
AATATTTATCTGATGAAGAATTCATTTCAATTTTCAAGATAACTCTTGCTCAATTTAAAA
CTTTATCTTTA
Length of 3' end seq. 671
Connected seq. ID VHI673P
Connected seq.
>VHI673P.Seq
TTTTAATCCAGTACCACAACAAAAACCAGTGGAACCTGAAGTTGTAATTCAAAAACCAGT
TGAACCAGTTGTTGTAGTTCAAAAAACACCAGTTGTCCAACAACCACCAGTTTCAACTTA
TAAACATACTTTTAATCCAGTACCACAACAAAAACCAGCTGAACCAGTTGTAGTTCAAAA
ACCAGTTGAGCCAGTTGTAGTTCAAAAACCAGTTGTTGAAGTTCAAAAATCACCAGTCGT
TCAACAACAACCAACAACATCAACTTATAAACATACTTTTAATCCAGTACCACAACAAAA
ACCAGCTGAATCAGTTGTTGTTCAAAAACCAGCTGAACCAGTTGTAATTCAAAAACCACC
AGTTGAACCAGTTGTAGTTCAAAAATCACCAGTTGTTCAACAACAACCAACAACATCAAC
TTATAAACATGTATTTAATCCAGTACAACAACAACAACAACAAACTACTCAATCTACAAC
AGTTAAACAACCAGAAATACCAAAAGTTGTAGAAGAACCAAAGAAAGTAGAACCAACACC
AACACCAAAACCATTACCAAAACCAGAACCAACAATTGTTATTCCAACTCAAGTTAAACA
ACCAGAAATACCAAAAGTTGTAGAAGAACCAAAGAAAGTAGAAC----------ATTCTC
AAAGAATATCTCATCGAAATCTTTAAATAGCAATGGTAGATCTAAATTGGTTGAATTTGA
AGAAGGTAAAGAATCTGAAGAATTCTTTAAACTTTTAGGTGGTCGTCAACCATATCCATT
ATCAAAAACCACTTCAAGAGTTGAACCACGTCTTTATCATTGTACTGTTGGTTCTGGTGC
TTTTGTTGTAGATGAAGTCACTTCTTTTGCTCAAGAGGATTTACTTCAAGAGGATGTTTT
CATCGTTGATGGTATCGAACAAATTTTCATTTGGATCGGTACTGAAACCACTGAAACTGA
ACGTAAATCTTCAATGGAAGTAGCAGTTGAATACTCTTCAACTTTACCATCACCAAGAAA
ACAAAATATTCCCGTCTATCTCACTTATCATGGTAAAGAACCTTACATTTTCACAAGCCT
ATTCCATGGTTGGGACTTTTCAAAGAGAGTCATTCCAACTATCTCTTTTGATCAAGATTT
ACTTTTAGCAAAGGAAATATTAGAACTTTATACTAAAAAATATACATATGATCAATTAGT
AAAGAAACAATATCCAAAAGGTATAGATGGTTCTCGTTTAGAAGAATATTTATCTGATGA
AGAATTCATTTCAATTTTCAAGATAACTCTTGCTCAATTTAAAACTTTATCTTTA
Length of connected seq. 1305
Full length Seq ID -
Full length Seq. -
Length of full length seq. -