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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI670
Library VH
(Link to library)
Clone ID VHI670
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16306-1
Original site URL
Representative seq. ID VHI670P
(Link to Original site)
Representative DNA sequence 
>VHI670 (VHI670Q) /CSM/VH/VHI6-C/VHI670Q.Seq.d/
AAAAAAAATAAAAAAAAAACAAATCAAATTTTATTTAAATAATATAAAAAAATAAATAAT
ATAATATAAAAAATGATATCATCTCCAATTACCTCATGTACTGAGGCAATTGAAATGATC
TCAAAACTTCCACAANAAGTATTTGAAAAAAGTACAAGAACAGCAACAAAGAAATTATTA
NCATCAATTGGTTTAGTGACAATTGGTACATATTTAGTATATGCACTTCCATGGTATTTG
TTACCAATTGGATGGATATTTATGGGTACAGCATGTTGNGGATTATTCTCTGTTGGGTAT
GCATGTGGTAATGATTTATTTTTCAAGAATAAATTTGTTAACTATGTAGTTGGAACAATT
TGTATGTTACCATTAATGTATCCATTANCCTATTGGAANAAAANAATTGAAAAGAAAGCA
NCAGCAAGTCGTGATTTCGTTCGTGAGATTGCAAGTGGTAATTTTTGGTTCCTCAGTTCA
TTACTTCAATGGTTATCATTAAATTTCAGTTTCAAATTCTCCAAATCAATGATGGTXXXX
XXXXXXATCCAGTTTTACGTTTCCAACATAAATATTTCATTCCATTGGCATTCAGTTTGG
GTTGGTTCTTACCAATGTTCGTTTGTGGTTTTGGTTGGAATGATTGGAAAGGTGGATTTT
TCATCGCTGGTGTTGCCTCCAAAGTACTCATGATGCAATGTACCTTTTGTATCAACTCTT
TGGCTCATTATCTTGGTGAAGCAACTTACACCGACCAAAGATCTCCACGTGACTCTTTTA
TCACATCTTTGGTCACTTTTGGTGAAGGTTATCATAACTTTCATCATGAATTCCCATATG
ATTACAGAAATGGTATTCATATGTCTGCTTACGATCCAGGTAAGTGGTTAATCAATTTCC
TTAGTTGGTTTGGTTTCGCCTATGAATTAAAGAGATTCCCAAGTGAATTATTCGCAAAAG
GTAAAATTCAAATGCAAGAGAAAACCATCAAAAAATTACGTGATCAACTCTATTGGGGTA
AACCATTGGATCAATTACCATCATTCACTCGTGCTCAAGTTAAAGAGAAATGTCAAAAAG
AAAAGAAACAACTCTTAATCATTGAAGATGTTATCTATGATATGTCTGAATTTGCTGAAA
AACATCCAGGTGGTAAACAATACATTGACGATTATATTGGTAAAGATGCAACTAAAGCTT
T
sequence update 2002.10.25
Translated Amino Acid sequence 
kknkkktnqilfk*ykkinnii*KMISSPITSCTEAIEMISKLPQXVFEKSTRTATKKLL
XSIGLVTIGTYLVYALPWYLLPIGWIFMGTACXGLFSVGYACGNDLFFKNKFVNYVVGTI
CMLPLMYPLXYWXKXIEKKAXASRDFVREIASGNFWFLSSLLQWLSLNFSFKFSKSMM--
-

---PVLRFQHKYFIPLAFSLGWFLPMFVCGFGWNDWKGGFFIAGVASKVLMMQCTFCINS
LAHYLGEATYTDQRSPRDSFITSLVTFGEGYHNFHHEFPYDYRNGIHMSAYDPGKWLINF
LSWFGFAYELKRFPSELFAKGKIQMQEKTIKKLRDQLYWGKPLDQLPSFTRAQVKEKCQK
EKKQLLIIEDVIYDMSEFAEKHPGGKQYIDDYIGKDATKA
Translated Amino Acid sequence (All Frames) 
Frame A:
kknkkktnqilfk*ykkinnii*KMISSPITSCTEAIEMISKLPQXVFEKSTRTATKKLL
XSIGLVTIGTYLVYALPWYLLPIGWIFMGTACXGLFSVGYACGNDLFFKNKFVNYVVGTI
CMLPLMYPLXYWXKXIEKKAXASRDFVREIASGNFWFLSSLLQWLSLNFSFKFSKSMM--
-

---iqfyvsninisfhwhsvwvgsyqcsfvvlvgmigkvdfsslvlppkys*cnvpfvst
lwliilvkqltptkdlhvtllshlwsllvkviitfimnshmitemvficlltiqvsg*si
slvglvspmn*rdsqvnysqkvkfkckrkpsknyvinsigvnhwinyhhslvlklkrnvk
kkrnns*slkmlsmiclnllkniqvvnntltiilvkmqlkl

Frame B:
kkikkkqikfylnnikk*ii*ykk*yhlqlphvlrqlk*sqnfhxkylkkvqeqqqrnyx
hqlv**qlvhi*ymhfhgicyqldgylwvqhvxdysllgmhvvmiyfsrinlltm*leqf
vcyh*cihxpigxkxlkrkxqqvvisfvrlqvvifgssvhyfngyh*isvsnspnq*w--
-

---ssftfpt*ifhsigiqfglvltnvrlwfwle*lerwifhrwcclqsthdamyllyql
fgslsw*snlhrpkist*lfyhifghfw*rls*lss*ipi*lqkwysyvclrsr*vvnqf
p*lvwfrl*ikeipk*iirkr*nsnarenhqkit*stllg*tigsitiihscss*remsk
rkettlnh*rcyl*yv*ic*ktsrw*tih*rlyw*rcn*sf

Frame C:
kk*kknksnfi*ii*knk*ynikndiisnylmy*gn*ndlktstxsi*kkyknsnkeiix
inwfsdnwyifsictsmvfvtnwmdiygysmlxiilcwvcmw**fifqe*ic*lcswnnl
yvtinvsixllexxn*kesxsks*frs*dckw*flvpqfitsmviikfqfqilqindg--
-

---PVLRFQHKYFIPLAFSLGWFLPMFVCGFGWNDWKGGFFIAGVASKVLMMQCTFCINS
LAHYLGEATYTDQRSPRDSFITSLVTFGEGYHNFHHEFPYDYRNGIHMSAYDPGKWLINF
LSWFGFAYELKRFPSELFAKGKIQMQEKTIKKLRDQLYWGKPLDQLPSFTRAQVKEKCQK
EKKQLLIIEDVIYDMSEFAEKHPGGKQYIDDYIGKDATKA
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI670 (VHI670Q) /CSM/VH/VHI6-C/VHI670Q.Seq.d/                       2135   0.0
VHQ471 (VHQ471Q) /CSM/VH/VHQ4-C/VHQ471Q.Seq.d/                       1291   0.0
VHP830 (VHP830Q) /CSM/VH/VHP8-B/VHP830Q.Seq.d/                       1291   0.0
VHP116 (VHP116Q) /CSM/VH/VHP1-A/VHP116Q.Seq.d/                       1291   0.0
VHD238 (VHD238Q) /CSM/VH/VHD2-B/VHD238Q.Seq.d/                       1291   0.0
VHC619 (VHC619Q) /CSM/VH/VHC6-A/VHC619Q.Seq.d/                       1291   0.0
VHB877 (VHB877Q) /CSM/VH/VHB8-D/VHB877Q.Seq.d/                       1291   0.0
VHA359 (VHA359Q) /CSM/VH/VHA3-C/VHA359Q.Seq.d/                       1291   0.0
VHA257 (VHA257Q) /CSM/VH/VHA2-C/VHA257Q.Seq.d/                       1291   0.0
AHQ243 (AHQ243Q) /CSM/AH/AHQ2-B/AHQ243Q.Seq.d/                       1291   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442037) Dictyostelium discoideum cDNA clone:ddv48k18, 3' ...  1298   0.0    1
(BJ446737) Dictyostelium discoideum cDNA clone:ddv63n18, 3' ...  1291   0.0    1
(BJ446335) Dictyostelium discoideum cDNA clone:ddv62l08, 3' ...  1291   0.0    1
(BJ445960) Dictyostelium discoideum cDNA clone:ddv61o03, 3' ...  1291   0.0    1
(BJ438590) Dictyostelium discoideum cDNA clone:ddv37k10, 3' ...  1291   0.0    1
(BJ438003) Dictyostelium discoideum cDNA clone:ddv36e06, 3' ...  1291   0.0    1
(BJ437632) Dictyostelium discoideum cDNA clone:ddv34j20, 3' ...  1291   0.0    1
(BJ436568) Dictyostelium discoideum cDNA clone:ddv31f15, 3' ...  1291   0.0    1
(BJ436541) Dictyostelium discoideum cDNA clone:ddv31a16, 3' ...  1291   0.0    1
(BJ357358) Dictyostelium discoideum cDNA clone:dda63e12, 3' ...  1291   0.0    1
dna update 2008.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY995173_1(AY995173|pid:none) Amylomyces rouxii delta-9 desatura...   232   2e-59
AB196774_1(AB196774|pid:none) Mortierella alpina gene for omega9...   218   3e-55
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear...   214   6e-54
AF085500_1(AF085500|pid:none) Mortierella alpina delta nine desa...   212   2e-53
Y18553_1(Y18553|pid:none) Mortierella alpina ole1 gene for stear...   212   2e-53
AB195980_1(AB195980|pid:none) Mortierella alpina gene for omega9...   209   2e-52
AP007151_392(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...   209   2e-52
AM920435_140(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   206   1e-51
AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos...   205   3e-51
CR382123_238(CR382123|pid:none) Kluyveromyces lactis strain NRRL...   203   9e-51
protein update 2009. 7.13
PSORT 

 psg: 0.88  gvh: 0.50  alm: 0.31  top: 0.30  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for VHI670 is end
5' end seq. ID VHI670F
5' end seq. 
>VHI670F.Seq
AAAAAAAATAAAAAAAAAACAAATCAAATTTTATTTAAATAATATAAAAAAATAAATAAT
ATAATATAAAAAATGATATCATCTCCAATTACCTCATGTACTGAGGCAATTGAAATGATC
TCAAAACTTCCACAANAAGTATTTGAAAAAAGTACAAGAACAGCAACAAAGAAATTATTA
NCATCAATTGGTTTAGTGACAATTGGTACATATTTAGTATATGCACTTCCATGGTATTTG
TTACCAATTGGATGGATATTTATGGGTACAGCATGTTGNGGATTATTCTCTGTTGGGTAT
GCATGTGGTAATGATTTATTTTTCAAGAATAAATTTGTTAACTATGTAGTTGGAACAATT
TGTATGTTACCATTAATGTATCCATTANCCTATTGGAANAAAANAATTGAAAAGAAAGCA
NCAGCAAGTCGTGATTTCGTTCGTGAGATTGCAAGTGGTAATTTTTGGTTCCTCAGTTCA
TTACTTCAATGGTTATCATTAAATTTCAGTTTCAAATTCTCCAAATCAATGATGGTNNNN
NNNNNN
Length of 5' end seq. 546
3' end seq. ID VHI670Z
3' end seq. 
>VHI670Z.Seq
NNNNNNNNNNATCCAGTTTTACGTTTCCAACATAAATATTTCATTCCATTGGCATTCAGT
TTGGGTTGGTTCTTACCAATGTTCGTTTGTGGTTTTGGTTGGAATGATTGGAAAGGTGGA
TTTTTCATCGCTGGTGTTGCCTCCAAAGTACTCATGATGCAATGTACCTTTTGTATCAAC
TCTTTGGCTCATTATCTTGGTGAAGCAACTTACACCGACCAAAGATCTCCACGTGACTCT
TTTATCACATCTTTGGTCACTTTTGGTGAAGGTTATCATAACTTTCATCATGAATTCCCA
TATGATTACAGAAATGGTATTCATATGTCTGCTTACGATCCAGGTAAGTGGTTAATCAAT
TTCCTTAGTTGGTTTGGTTTCGCCTATGAATTAAAGAGATTCCCAAGTGAATTATTCGCA
AAAGGTAAAATTCAAATGCAAGAGAAAACCATCAAAAAATTACGTGATCAACTCTATTGG
GGTAAACCATTGGATCAATTACCATCATTCACTCGTGCTCAAGTTAAAGAGAAATGTCAA
AAAGAAAAGAAACAACTCTTAATCATTGAAGATGTTATCTATGATATGTCTGAATTTGCT
GAAAAACATCCAGGTGGTAAACAATACATTGACGATTATATTGGTAAAGATGCAACTAAA
GCTTT
Length of 3' end seq. 665
Connected seq. ID VHI670P
Connected seq. 
>VHI670P.Seq
AAAAAAAATAAAAAAAAAACAAATCAAATTTTATTTAAATAATATAAAAAAATAAATAAT
ATAATATAAAAAATGATATCATCTCCAATTACCTCATGTACTGAGGCAATTGAAATGATC
TCAAAACTTCCACAANAAGTATTTGAAAAAAGTACAAGAACAGCAACAAAGAAATTATTA
NCATCAATTGGTTTAGTGACAATTGGTACATATTTAGTATATGCACTTCCATGGTATTTG
TTACCAATTGGATGGATATTTATGGGTACAGCATGTTGNGGATTATTCTCTGTTGGGTAT
GCATGTGGTAATGATTTATTTTTCAAGAATAAATTTGTTAACTATGTAGTTGGAACAATT
TGTATGTTACCATTAATGTATCCATTANCCTATTGGAANAAAANAATTGAAAAGAAAGCA
NCAGCAAGTCGTGATTTCGTTCGTGAGATTGCAAGTGGTAATTTTTGGTTCCTCAGTTCA
TTACTTCAATGGTTATCATTAAATTTCAGTTTCAAATTCTCCAAATCAATGATGGT----
------ATCCAGTTTTACGTTTCCAACATAAATATTTCATTCCATTGGCATTCAGTTTGG
GTTGGTTCTTACCAATGTTCGTTTGTGGTTTTGGTTGGAATGATTGGAAAGGTGGATTTT
TCATCGCTGGTGTTGCCTCCAAAGTACTCATGATGCAATGTACCTTTTGTATCAACTCTT
TGGCTCATTATCTTGGTGAAGCAACTTACACCGACCAAAGATCTCCACGTGACTCTTTTA
TCACATCTTTGGTCACTTTTGGTGAAGGTTATCATAACTTTCATCATGAATTCCCATATG
ATTACAGAAATGGTATTCATATGTCTGCTTACGATCCAGGTAAGTGGTTAATCAATTTCC
TTAGTTGGTTTGGTTTCGCCTATGAATTAAAGAGATTCCCAAGTGAATTATTCGCAAAAG
GTAAAATTCAAATGCAAGAGAAAACCATCAAAAAATTACGTGATCAACTCTATTGGGGTA
AACCATTGGATCAATTACCATCATTCACTCGTGCTCAAGTTAAAGAGAAATGTCAAAAAG
AAAAGAAACAACTCTTAATCATTGAAGATGTTATCTATGATATGTCTGAATTTGCTGAAA
AACATCCAGGTGGTAAACAATACATTGACGATTATATTGGTAAAGATGCAACTAAAGCTT
T
Length of connected seq. 1191
Full length Seq ID -
Full length Seq. -
Length of full length seq. -