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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI661
Library VH
(Link to library)
Clone ID VHI661
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10840-1
Original site URL
Representative seq. ID VHI661P
(Link to Original site)
Representative DNA sequence 
>VHI661 (VHI661Q) /CSM/VH/VHI6-C/VHI661Q.Seq.d/
AATTTTTATAGATTTTGTTATTTTAGTCAATCAATATTGTGTGTATATGTATAATAATTG
TGTATATTAGTGTATAATATATATCTATTTTTAAACAGATCAACAATAAGAAAAAAATGA
AAAGATCAGAAAAATCAAGTACATCTGTTGTTAGTAATAACAAACAACAAGATGTAAATA
TCATCAGTTCAAATGAAGTTGGTGTTAAAGAAGAAAATAAAGGACATCAAGAATTCTTAT
TAAAAGTTTTAATTCTATCAGTCATTTATGTTTTAGCATTTTCAACTCGTTTATTCTCAG
TATTACGTTATGAAAGTGTTATTCATGAATTTGATCCATATTTTAATTATAGATCAACAA
TATATCTTGTTCAAGAAGGTTTTTATAATTTTTTAAATTGGTTTGATGAAAGAGCATGGT
ATCCATTAGGACGTATTGTAGGAGGTACAATTTACCCAGGTTTAATGGCAACAGCAAGTT
TAGTTCATTGGTCATTGAATTCATTGAATATTACAGTTAATATTAGAAATGTATGTGTAT
TGTTATCACCATGGTTTGCATCAAATACAGCAATGGTAACCTATAAATTTGCCAAAXXXX
XXXXXXAAGAAGTTAAAGGCTCCATCATCACCAAGTGATGCTAATAATTCCAAAGAGAGT
GGTGGTGTTATGGTTGCAGTCTTAACTGTTCTTTTAATTCTNTACGCTTTCCATTGTACT
TGGGTCACTAGTGAAGCCTACTCATCTCCATCCATTGTACTCTCTGCCAAACAAAACGAT
GGTAGTCGTGTGATTTTCGATGATTTCCGTGAAGCCTACCGTTGGATTGGTCAAAATACT
GCCGACGACGCTCGTATTATGTCTTGGTGGGATTATGGTTATCAATTATCTGCAATGGCC
AATCGTACCGTATTGGTTGATAATAACACTTGGAACAATAGTCATATCGCTCAAGTTGGT
AAAGCATTTGCATCCACTGAAGAAGATGCTTACATACAAATGAAAGCATTGGATGTCGAT
TATGTTTTAGTTATTTTTGGTGGTTTAACTGGTTACAGTTCTGATGATATCAATAAATTC
CTTTGGATGGTTAGAATTGGTGGTAGTTGTGATCCAAATATTAAAGAACAAGATTATCTC
ACCAATGGTCAATATAGAATAGATAAAGGTGCCTCACCAACAATGTTAAATTCTCTCATG
TACAAACTTAGTTACTATCGTTTCTCTGAAGTTCACACTGACTATCAAAGACCAACAGGT
TTCGATCGTGTAAGAAATGTTGAAATTGGTAATAAAAATTTCGATTTAACTTATTTAGAA
GAAGCTTTCACATCTGTTCATTGGTTAGTTAGAGTTTATAAAGTTAAAGATTT
sequence update 2002.10.25
Translated Amino Acid sequence 
fl*illf*sinivciciiivyisv*YISIFKQINNKKKMKRSEKSSTSVVSNNKQQDVNI
ISSNEVGVKEENKGHQEFLLKVLILSVIYVLAFSTRLFSVLRYESVIHEFDPYFNYRSTI
YLVQEGFYNFLNWFDERAWYPLGRIVGGTIYPGLMATASLVHWSLNSLNITVNIRNVCVL
LSPWFASNTAMVTYKFAK---

---KKLKAPSSPSDANNSKESGGVMVAVLTVLLILYAFHCTWVTSEAYSSPSIVLSAKQN
DGSRVIFDDFREAYRWIGQNTADDARIMSWWDYGYQLSAMANRTVLVDNNTWNNSHIAQV
GKAFASTEEDAYIQMKALDVDYVLVIFGGLTGYSSDDINKFLWMVRIGGSCDPNIKEQDY
LTNGQYRIDKGASPTMLNSLMYKLSYYRFSEVHTDYQRPTGFDRVRNVEIGNKNFDLTYL
EEAFTSVHWLVRVYKVKD
Translated Amino Acid sequence (All Frames) 
Frame A:
nfyrfcyfsqsilcvyv**lcilvyniylflnrstirkk*kdqknqvhlllvitnnkm*i
ssvqmklvlkkkikdiknsy*kf*fyqsfmf*hfqlvysqyyvmkvlfmnlihiliidqq
yilfkkvfiif*iglmkehgih*dvl*evqftqv*wqqqv*figh*ih*ilqlilemyvy
cyhhglhqiqqw*pinlp---

---KKLKAPSSPSDANNSKESGGVMVAVLTVLLILYAFHCTWVTSEAYSSPSIVLSAKQN
DGSRVIFDDFREAYRWIGQNTADDARIMSWWDYGYQLSAMANRTVLVDNNTWNNSHIAQV
GKAFASTEEDAYIQMKALDVDYVLVIFGGLTGYSSDDINKFLWMVRIGGSCDPNIKEQDY
LTNGQYRIDKGASPTMLNSLMYKLSYYRFSEVHTDYQRPTGFDRVRNVEIGNKNFDLTYL
EEAFTSVHWLVRVYKVKD

Frame B:
ifidfvilvnqycvymynncvy*ciiyiyf*tdqq*eknekirkikyicc***qttrcky
hqfk*swc*rrk*rtsriliksfnsishlcfsifnsfilsitl*kcys*i*sif*l*inn
iscsrrfl*ffklv**ksmvsirtycrrynlprfngnskfsslviefieyys*y*kcmci
vitmvcikysngnl*icq---

---rs*rlhhhqvmliipkrvvvlwlqs*lff*fxtlsivlgslvkpthlhplyslpnkt
mvvv*fsmisvkptvglvkilpttlvlclggimvinylqwpivpywliitlgtivislkl
vkhlhplkkmltyk*khwmsimf*lflvv*lvtvlmisinsfgwlelvvvviqilknkii
spmvnie*ikvphqqc*ilsctnlvtivslkftltikdqqvsiv*emlklvikisi*li*
kklshlfig*lefiklki

Frame C:
fl*illf*sinivciciiivyisv*YISIFKQINNKKKMKRSEKSSTSVVSNNKQQDVNI
ISSNEVGVKEENKGHQEFLLKVLILSVIYVLAFSTRLFSVLRYESVIHEFDPYFNYRSTI
YLVQEGFYNFLNWFDERAWYPLGRIVGGTIYPGLMATASLVHWSLNSLNITVNIRNVCVL
LSPWFASNTAMVTYKFAK---

---evkgsiitk*c**fqrewwcygcslncsfnsxrfplylgh**sllisihctlcqtkr
w*scdfr*fp*slpldwskycrrrsyyvlvglwlsiicngqsyrig***hleq*syrssw
*sicih*rrclhtnesigcrlcfsyfwwfnwlqf**yq*ipldg*nww*l*sky*rtrls
hqwsi*nr*rcltnnvkfshvqt*llsfl*ssh*lsktnrfrsckkc*nw**kfrfnlfr
rsfhicslvs*sl*s*rf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI661 (VHI661Q) /CSM/VH/VHI6-C/VHI661Q.Seq.d/                       2448   0.0
AHE323 (AHE323Q) /CSM/AH/AHE3-A/AHE323Q.Seq.d/                       1505   0.0
VHA159 (VHA159Q) /CSM/VH/VHA1-C/VHA159Q.Seq.d/                       1499   0.0
AHA661 (AHA661Q) /CSM/AH/AHA6-C/AHA661Q.Seq.d/                       1495   0.0
VHO701 (VHO701Q) /CSM/VH/VHO7-A/VHO701Q.Seq.d/                       1421   0.0
VHJ693 (VHJ693Q) /CSM/VH/VHJ6-D/VHJ693Q.Seq.d/                       1417   0.0
VHO417 (VHO417Q) /CSM/VH/VHO4-A/VHO417Q.Seq.d/                       1405   0.0
VHD769 (VHD769Q) /CSM/VH/VHD7-C/VHD769Q.Seq.d/                       1405   0.0
AHN309 (AHN309Q) /CSM/AH/AHN3-A/AHN309Q.Seq.d/                       1370   0.0
VHJ440 (VHJ440Q) /CSM/VH/VHJ4-B/VHJ440Q.Seq.d/                       1368   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442026) Dictyostelium discoideum cDNA clone:ddv48i16, 3' ...  1515   0.0    1
(BJ350232) Dictyostelium discoideum cDNA clone:dda39n05, 3' ...  1505   0.0    1
(BJ436563) Dictyostelium discoideum cDNA clone:ddv31e15, 3' ...  1451   0.0    2
(BJ348237) Dictyostelium discoideum cDNA clone:dda32i16, 3' ...  1447   0.0    2
(BJ445595) Dictyostelium discoideum cDNA clone:ddv60b01, 3' ...  1421   0.0    1
(BJ442751) Dictyostelium discoideum cDNA clone:ddv50i24, 3' ...  1417   0.0    1
(BJ445279) Dictyostelium discoideum cDNA clone:ddv59b06, 3' ...  1405   0.0    1
(BJ355414) Dictyostelium discoideum cDNA clone:dda57b03, 3' ...  1370   0.0    1
(BJ442305) Dictyostelium discoideum cDNA clone:ddv49p10, 3' ...  1368   0.0    1
(BJ350789) Dictyostelium discoideum cDNA clone:dda41d06, 3' ...  1362   0.0    1
dna update 2008.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT044907_1(BT044907|pid:none) Salmo salar clone ssal-rgf-507-033...   353   6e-96
L47337_1(L47337|pid:none) Homo sapiens transmembrane protein (TM...   353   6e-96
AK295892_1(AK295892|pid:none) Homo sapiens cDNA FLJ58575 complet...   353   1e-95
CQ834708_1(CQ834708|pid:none) Sequence 579 from Patent WO2004058...   353   1e-95
AY891653_1(AY891653|pid:none) Synthetic construct Homo sapiens c...   353   1e-95
CQ834710_1(CQ834710|pid:none) Sequence 581 from Patent WO2004058...   353   1e-95
(P46977) RecName: Full=Dolichyl-diphosphooligosaccharide--protei...   353   1e-95
BC048348_1(BC048348|pid:none) Homo sapiens STT3, subunit of the ...   353   1e-95
BC046072_1(BC046072|pid:none) Danio rerio integral membrane prot...   352   2e-95
AK030363_1(AK030363|pid:none) Mus musculus adult male pituitary ...   351   3e-95
protein update 2009. 7.13
PSORT 

 psg: 0.22  gvh: 0.21  alm: 0.22  top: 0.53  tms: 0.13  mit: 0.36  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 32.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for VHI661 is pla
5' end seq. ID VHI661F
5' end seq. 
>VHI661F.Seq
AATTTTTATAGATTTTGTTATTTTAGTCAATCAATATTGTGTGTATATGTATAATAATTG
TGTATATTAGTGTATAATATATATCTATTTTTAAACAGATCAACAATAAGAAAAAAATGA
AAAGATCAGAAAAATCAAGTACATCTGTTGTTAGTAATAACAAACAACAAGATGTAAATA
TCATCAGTTCAAATGAAGTTGGTGTTAAAGAAGAAAATAAAGGACATCAAGAATTCTTAT
TAAAAGTTTTAATTCTATCAGTCATTTATGTTTTAGCATTTTCAACTCGTTTATTCTCAG
TATTACGTTATGAAAGTGTTATTCATGAATTTGATCCATATTTTAATTATAGATCAACAA
TATATCTTGTTCAAGAAGGTTTTTATAATTTTTTAAATTGGTTTGATGAAAGAGCATGGT
ATCCATTAGGACGTATTGTAGGAGGTACAATTTACCCAGGTTTAATGGCAACAGCAAGTT
TAGTTCATTGGTCATTGAATTCATTGAATATTACAGTTAATATTAGAAATGTATGTGTAT
TGTTATCACCATGGTTTGCATCAAATACAGCAATGGTAACCTATAAATTTGCCAAANNNN
NNNNNN
Length of 5' end seq. 606
3' end seq. ID VHI661Z
3' end seq. 
>VHI661Z.Seq
NNNNNNNNNNAAGAAGTTAAAGGCTCCATCATCACCAAGTGATGCTAATAATTCCAAAGA
GAGTGGTGGTGTTATGGTTGCAGTCTTAACTGTTCTTTTAATTCTNTACGCTTTCCATTG
TACTTGGGTCACTAGTGAAGCCTACTCATCTCCATCCATTGTACTCTCTGCCAAACAAAA
CGATGGTAGTCGTGTGATTTTCGATGATTTCCGTGAAGCCTACCGTTGGATTGGTCAAAA
TACTGCCGACGACGCTCGTATTATGTCTTGGTGGGATTATGGTTATCAATTATCTGCAAT
GGCCAATCGTACCGTATTGGTTGATAATAACACTTGGAACAATAGTCATATCGCTCAAGT
TGGTAAAGCATTTGCATCCACTGAAGAAGATGCTTACATACAAATGAAAGCATTGGATGT
CGATTATGTTTTAGTTATTTTTGGTGGTTTAACTGGTTACAGTTCTGATGATATCAATAA
ATTCCTTTGGATGGTTAGAATTGGTGGTAGTTGTGATCCAAATATTAAAGAACAAGATTA
TCTCACCAATGGTCAATATAGAATAGATAAAGGTGCCTCACCAACAATGTTAAATTCTCT
CATGTACAAACTTAGTTACTATCGTTTCTCTGAAGTTCACACTGACTATCAAAGACCAAC
AGGTTTCGATCGTGTAAGAAATGTTGAAATTGGTAATAAAAATTTCGATTTAACTTATTT
AGAAGAAGCTTTCACATCTGTTCATTGGTTAGTTAGAGTTTATAAAGTTAAAGATTT
Length of 3' end seq. 777
Connected seq. ID VHI661P
Connected seq. 
>VHI661P.Seq
AATTTTTATAGATTTTGTTATTTTAGTCAATCAATATTGTGTGTATATGTATAATAATTG
TGTATATTAGTGTATAATATATATCTATTTTTAAACAGATCAACAATAAGAAAAAAATGA
AAAGATCAGAAAAATCAAGTACATCTGTTGTTAGTAATAACAAACAACAAGATGTAAATA
TCATCAGTTCAAATGAAGTTGGTGTTAAAGAAGAAAATAAAGGACATCAAGAATTCTTAT
TAAAAGTTTTAATTCTATCAGTCATTTATGTTTTAGCATTTTCAACTCGTTTATTCTCAG
TATTACGTTATGAAAGTGTTATTCATGAATTTGATCCATATTTTAATTATAGATCAACAA
TATATCTTGTTCAAGAAGGTTTTTATAATTTTTTAAATTGGTTTGATGAAAGAGCATGGT
ATCCATTAGGACGTATTGTAGGAGGTACAATTTACCCAGGTTTAATGGCAACAGCAAGTT
TAGTTCATTGGTCATTGAATTCATTGAATATTACAGTTAATATTAGAAATGTATGTGTAT
TGTTATCACCATGGTTTGCATCAAATACAGCAATGGTAACCTATAAATTTGCCAAA----
------AAGAAGTTAAAGGCTCCATCATCACCAAGTGATGCTAATAATTCCAAAGAGAGT
GGTGGTGTTATGGTTGCAGTCTTAACTGTTCTTTTAATTCTNTACGCTTTCCATTGTACT
TGGGTCACTAGTGAAGCCTACTCATCTCCATCCATTGTACTCTCTGCCAAACAAAACGAT
GGTAGTCGTGTGATTTTCGATGATTTCCGTGAAGCCTACCGTTGGATTGGTCAAAATACT
GCCGACGACGCTCGTATTATGTCTTGGTGGGATTATGGTTATCAATTATCTGCAATGGCC
AATCGTACCGTATTGGTTGATAATAACACTTGGAACAATAGTCATATCGCTCAAGTTGGT
AAAGCATTTGCATCCACTGAAGAAGATGCTTACATACAAATGAAAGCATTGGATGTCGAT
TATGTTTTAGTTATTTTTGGTGGTTTAACTGGTTACAGTTCTGATGATATCAATAAATTC
CTTTGGATGGTTAGAATTGGTGGTAGTTGTGATCCAAATATTAAAGAACAAGATTATCTC
ACCAATGGTCAATATAGAATAGATAAAGGTGCCTCACCAACAATGTTAAATTCTCTCATG
TACAAACTTAGTTACTATCGTTTCTCTGAAGTTCACACTGACTATCAAAGACCAACAGGT
TTCGATCGTGTAAGAAATGTTGAAATTGGTAATAAAAATTTCGATTTAACTTATTTAGAA
GAAGCTTTCACATCTGTTCATTGGTTAGTTAGAGTTTATAAAGTTAAAGATTT
Length of connected seq. 1363
Full length Seq ID -
Full length Seq. -
Length of full length seq. -