NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI625
Library VH
(Link to library)
Clone ID VHI625
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16303-1
Original site URL
Representative seq. ID VHI625P
(Link to Original site)
Representative DNA sequence 
>VHI625 (VHI625Q) /CSM/VH/VHI6-B/VHI625Q.Seq.d/
AAAATAATAGAGTATACACAATTTATTATTATTTGATCATTGTAATTATATTATAAATTT
ATACTCATTTATTGGTTTGATTGTGTACATATAAAAAGTTATTAAATAAATAAATAATAA
TAATAATAATAATAACAATATTAATAATAATAATAAAATATATTTTAAAAAAAAAATAAA
AATAAAATAAAAATATTTGTACATAATAAAATCTACGACAATAATAATAGTTAAAAATAA
TAAAATGTCAGAXXXXXXXXXXCAGCAACTCCATTCAAACCACCAAGTGAAATGTTATCA
AGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTC
CTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAA
CTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATT
ACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTA
TTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAAC
AACGATACTGAATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGT
AATATTGCTGTTCAAATTGGTGAAACTAAACAATCAGAAGGTCAACAAACTGTCAGCGAA
CAAGAAATTGAAAAAGAACGNTTCTTCAAACTTCAAGCTGCCATTGTANGTATTATGAAA
TNTAAAAAGACAATGACTCACAATGATCTCACTGTGGAAACTACCACTCAAGTCAGCAAA
TGGTTCACACCAAAGATCNCTGCCATTAAAAAGGCGATCGAATACCTCATCGACCAAGAA
TACATTAGAAGAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
k**sihnlllfdhcnyiinlysfiglivyi*kvik*innnnnnnnninnnnkiyfkkkik
ik*KYLYIIKSTTIIIVKNNKMS---

---ATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKIYKLTTTA
YQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFKNWNNDTEF
TVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVXIMKXKKTM
THNDLTVETTTQVSKWFTPKIXAIKKAIEYLIDQEYIRRT
Translated Amino Acid sequence (All Frames) 
Frame A:
kiieytqfiii*sl*lyykfiliywfdcvhiksy*ink*******qy*****nif*kknk
nkikifvhnkiydnnns*k**nvr---

---qqlhsnhqvkcyqvlhisnlstkkvtkvef*lsftifqelmltqdkpkekyinlqlq
htkwqfy*clmeqirlldsllmiqlv*mkhqfvfhy*l*skqvllsvqnqasrigttiln
sl*ilnsvqrr*rsavillfklvklnnqkvnklsankklkknxssnfklplxvl*nxkrq
*ltmislwklplksangshqrslplkrrsntsstkntlee

Frame B:
k**sihnlllfdhcnyiinlysfiglivyi*kvik*innnnnnnnninnnnkiyfkkkik
ik*KYLYIIKSTTIIIVKNNKMS---

---snsiqttk*nvikyyifriflqkklpr*sfnfplrffks*c*lktsqrkni*tynys
ipngnfinv*wsr*dy*ipy**ynwfr*ninsssiisfnqnryy*vfrtklqeleqry*i
hckf*iqfkedegql*yccsnw*n*tirrstncqrtrn*krtxlqtsschcxyyex*kdn
dsq*shcgnyhssqqmvhtkdxch*kgdriphrprih*kn

Frame C:
nnrvytiyyyliiviil*iythllv*lctykkllnk*iiiiiiitiliiiikyilkkk*k
*nknict**nlrq***lkiikcq---

---ATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKIYKLTTTA
YQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFKNWNNDTEF
TVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVXIMKXKKTM
THNDLTVETTTQVSKWFTPKIXAIKKAIEYLIDQEYIRRT
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP853 (VHP853Q) /CSM/VH/VHP8-C/VHP853Q.Seq.d/                       1229   0.0
VHP693 (VHP693Q) /CSM/VH/VHP6-D/VHP693Q.Seq.d/                       1229   0.0
VHP636 (VHP636Q) /CSM/VH/VHP6-B/VHP636Q.Seq.d/                       1229   0.0
VHP488 (VHP488Q) /CSM/VH/VHP4-D/VHP488Q.Seq.d/                       1229   0.0
VHM669 (VHM669Q) /CSM/VH/VHM6-C/VHM669Q.Seq.d/                       1229   0.0
VHM661 (VHM661Q) /CSM/VH/VHM6-C/VHM661Q.Seq.d/                       1229   0.0
VHK869 (VHK869Q) /CSM/VH/VHK8-C/VHK869Q.Seq.d/                       1229   0.0
VHK661 (VHK661Q) /CSM/VH/VHK6-C/VHK661Q.Seq.d/                       1229   0.0
VHK368 (VHK368Q) /CSM/VH/VHK3-C/VHK368Q.Seq.d/                       1229   0.0
VHJ831 (VHJ831Q) /CSM/VH/VHJ8-B/VHJ831Q.Seq.d/                       1229   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446482) Dictyostelium discoideum cDNA clone:ddv62i24, 3' ...  1128   0.0    2
(BJ446406) Dictyostelium discoideum cDNA clone:ddv62j14, 3' ...  1128   0.0    2
(BJ446309) Dictyostelium discoideum cDNA clone:ddv62g10, 3' ...  1128   0.0    2
(BJ446298) Dictyostelium discoideum cDNA clone:ddv62e09, 3' ...  1128   0.0    2
(BJ446195) Dictyostelium discoideum cDNA clone:ddv61p22, 3' ...  1128   0.0    2
(BJ445950) Dictyostelium discoideum cDNA clone:ddv61m01, 3' ...  1128   0.0    2
(BJ444513) Dictyostelium discoideum cDNA clone:ddv56i18, 3' ...  1128   0.0    2
(BJ444511) Dictyostelium discoideum cDNA clone:ddv56i16, 3' ...  1128   0.0    2
(BJ443341) Dictyostelium discoideum cDNA clone:ddv52j18, 3' ...  1128   0.0    2
(BJ443334) Dictyostelium discoideum cDNA clone:ddv52i16, 3' ...  1128   0.0    2
dna update 2008.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU633897_277(CU633897|pid:none) Podospora anserina genomic DNA c...   127   7e-28
AE017356_115(AE017356|pid:none) Cryptococcus neoformans var. neo...   123   8e-27
AK072402_1(AK072402|pid:none) Oryza sativa Japonica Group cDNA c...   120   5e-26
FB802359_1(FB802359|pid:none) Sequence 21632 from Patent WO20080...   120   5e-26
AL606454_2(AL606454|pid:none) Oryza sativa genomic DNA, chromoso...   120   6e-26
FB802423_1(FB802423|pid:none) Sequence 21696 from Patent WO20080...   119   1e-25
AM484063_2(AM484063|pid:none) Vitis vinifera contig VV78X066416....   117   4e-25
CR382130_516(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   117   5e-25
BT069454_1(BT069454|pid:none) Zea mays full-length cDNA clone ZM...   117   5e-25
FB802477_1(FB802477|pid:none) Sequence 21750 from Patent WO20080...   117   5e-25
protein update 2009. 7.13
PSORT 

 psg: 0.82  gvh: 0.50  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 20.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VHI625 is nuc
5' end seq. ID VHI625F
5' end seq. 
>VHI625F.Seq
AAAATAATAGAGTATACACAATTTATTATTATTTGATCATTGTAATTATATTATAAATTT
ATACTCATTTATTGGTTTGATTGTGTACATATAAAAAGTTATTAAATAAATAAATAATAA
TAATAATAATAATAACAATATTAATAATAATAATAAAATATATTTTAAAAAAAAAATAAA
AATAAAATAAAAATATTTGTACATAATAAAATCTACGACAATAATAATAGTTAAAAATAA
TAAAATGTCAGANNNNNNNNNN
Length of 5' end seq. 262
3' end seq. ID VHI625Z
3' end seq. 
>VHI625Z.Seq
NNNNNNNNNNCAGCAACTCCATTCAAACCACCAAGTGAAATGTTATCAAGTATTACATAT
TTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTCCTTTACGATTTT
TCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAACTTACAACTACA
GCATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATTACTAGATTCCTT
ATTAATGATACAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTATTAGCTTTAATC
AAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAACAACGATACTGAA
TTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGTAATATTGCTGTT
CAAATTGGTGAAACTAAACAATCAGAAGGTCAACAAACTGTCAGCGAACAAGAAATTGAA
AAAGAACGNTTCTTCAAACTTCAAGCTGCCATTGTANGTATTATGAAATNTAAAAAGACA
ATGACTCACAATGATCTCACTGTGGAAACTACCACTCAAGTCAGCAAATGGTTCACACCA
AAGATCNCTGCCATTAAAAAGGCGATCGAATACCTCATCGACCAAGAATACATTAGAAGA
ACT
Length of 3' end seq. 663
Connected seq. ID VHI625P
Connected seq. 
>VHI625P.Seq
AAAATAATAGAGTATACACAATTTATTATTATTTGATCATTGTAATTATATTATAAATTT
ATACTCATTTATTGGTTTGATTGTGTACATATAAAAAGTTATTAAATAAATAAATAATAA
TAATAATAATAATAACAATATTAATAATAATAATAAAATATATTTTAAAAAAAAAATAAA
AATAAAATAAAAATATTTGTACATAATAAAATCTACGACAATAATAATAGTTAAAAATAA
TAAAATGTCAGA----------CAGCAACTCCATTCAAACCACCAAGTGAAATGTTATCA
AGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTC
CTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAA
CTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATT
ACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTA
TTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAAC
AACGATACTGAATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGT
AATATTGCTGTTCAAATTGGTGAAACTAAACAATCAGAAGGTCAACAAACTGTCAGCGAA
CAAGAAATTGAAAAAGAACGNTTCTTCAAACTTCAAGCTGCCATTGTANGTATTATGAAA
TNTAAAAAGACAATGACTCACAATGATCTCACTGTGGAAACTACCACTCAAGTCAGCAAA
TGGTTCACACCAAAGATCNCTGCCATTAAAAAGGCGATCGAATACCTCATCGACCAAGAA
TACATTAGAAGAACT
Length of connected seq. 905
Full length Seq ID -
Full length Seq. -
Length of full length seq. -