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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI619
Library VH
(Link to library)
Clone ID VHI619
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12114-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHI619 (VHI619Q) /CSM/VH/VHI6-A/VHI619Q.Seq.d/
CACTGTTGGCCTACTGGTTTAGTTAAACAAGCAGAACTTCAACANGAGAGAGATTTCCTT
CGTGGCCGTTTGAATCAAGTTGGTCAAGAATCACTCTCCACCATTAAATTGGCAAATGAG
AGTAACTCTGTGGAGATTATGGAACAAATGGTTGAATACATGGAGAATATGCAAXXXXXX
XXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
HCWPTGLVKQAELQXERDFLRGRLNQVGQESLSTIKLANESNSVEIMEQMVEYMENM---
Translated Amino Acid sequence (All Frames) 
Frame A:
HCWPTGLVKQAELQXERDFLRGRLNQVGQESLSTIKLANESNSVEIMEQMVEYMENM---


Frame B:
tvgllv*lnkqnfnxreisfvav*iklvknhspplnwqmrvtlwrlwnkwlntwric---


Frame C:
llaywfs*tsrtstxerfpswpfesswsritlhh*igk*e*lcgdygtng*ihgeya---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI619 (VHI619Q) /CSM/VH/VHI6-A/VHI619Q.Seq.d/                        339   8e-93
VHI577 (VHI577Q) /CSM/VH/VHI5-D/VHI577Q.Seq.d/                        305   1e-82
VHD394 (VHD394Q) /CSM/VH/VHD3-D/VHD394Q.Seq.d/                        305   1e-82
VHD360 (VHD360Q) /CSM/VH/VHD3-C/VHD360Q.Seq.d/                        305   1e-82
SHK704 (SHK704Q) /CSM/SH/SHK7-A/SHK704Q.Seq.d/                        305   1e-82
VHH229 (VHH229Q) /CSM/VH/VHH2-B/VHH229Q.Seq.d/                        242   1e-63
CFB594 (CFB594Q) /CSM/CF/CFB5-D/CFB594Q.Seq.d/                         46   2e-04
VFI505 (VFI505Q) /CSM/VF/VFI5-A/VFI505Q.Seq.d/                         44   7e-04
SFH727 (SFH727Q) /CSM/SF/SFH7-B/SFH727Q.Seq.d/                         44   7e-04
CHR170 (CHR170Q) /CSM/CH/CHR1-C/CHR170Q.Seq.d/                         44   7e-04
own update 2002.12.31
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423095) Dictyostelium discoideum cDNA clone:ddv48e06, 5' ...   339   2e-89  1
(BJ423332) Dictyostelium discoideum cDNA clone:ddv48i19, 5' ...   305   3e-79  1
(BJ419999) Dictyostelium discoideum cDNA clone:ddv37l23, 5' ...   305   3e-79  1
(BJ419900) Dictyostelium discoideum cDNA clone:ddv37h15, 5' ...   305   3e-79  1
(BJ397105) Dictyostelium discoideum cDNA clone:dds45h01, 5' ...   305   3e-79  1
(BJ422256) Dictyostelium discoideum cDNA clone:ddv45i08, 5' ...   242   3e-60  1
(CJ474942) Macaca fascicularis mRNA, clone: QorA-15134, 5' e...    48   0.10   1
(CJ458438) Macaca fascicularis mRNA, clone: QmoA-10433, 5' e...    48   0.10   1
(CJ455089) Macaca fascicularis mRNA, clone: QflA-20857, 5' e...    48   0.10   1
(CJ472069) Macaca fascicularis mRNA, clone: QorA-11817, 5' e...    34   0.26   2
dna update 2008.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU928174_215(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    32   9.2
protein update 2009. 7.13
PSORT 

 psg: 0.42  gvh: 0.46  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHI619 is nuc
5' end seq. ID VHI619F
5' end seq. 
>VHI619F.Seq
CACTGTTGGCCTACTGGTTTAGTTAAACAAGCAGAACTTCAACANGAGAGAGATTTCCTT
CGTGGCCGTTTGAATCAAGTTGGTCAAGAATCACTCTCCACCATTAAATTGGCAAATGAG
AGTAACTCTGTGGAGATTATGGAACAAATGGTTGAATACATGGAGAATATGCAANNNNNN
NNNN
Length of 5' end seq. 184
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -