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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI605
Library VH
(Link to library)
Clone ID VHI605
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16423-1
Original site URL
Representative seq. ID VHI605P
(Link to Original site)
Representative DNA sequence 
>VHI605 (VHI605Q) /CSM/VH/VHI6-A/VHI605Q.Seq.d/
AATTTTCATCCACGCGGATAAATTTTTTTAAAGAATTAGTCATTTTATGCCAATTGGAAA
TAACAAAGATAACGATGGAACTACCCTGAATATCTCAGGGTTAACCATCTCTGATAAGAG
TTCGTCAACTTCATCAAACAACAACACAACAACAACAACAACACAAACTAGTGAACCATA
TGTCCCACCATCTCGTAGAAACAAGATGAATAATAGTTCAGGTTCATCAAGAGACGATTA
TCCATCACCATCTGACCGTGATAATCGTGATTCACCATTCAATCGTGACCGTCGTGACGA
TGGTTACAGAGGTGGTAACAATTTTAGGGAAAATAACTCTAATAACAACAACAACAGTAG
AGATAACTACAAAAGTCCATCATTCTCAAGAAACAATAATAGTAATGGTGGTGGTAGTAG
TAGTGGTAGCGGTGGTTGGGATAATGGTCCAAGAGAACAAGGCCCACCAAGAGGTAATAG
TTACTCTTATTCACCAAATAATTCATTCTCTCGTGGTGGTAATCAAGGTGGTTATGGTAA
TAGAGGCGGAAGTGGCAGTAGTTTTGGTAAACCAGCCAATAAAAATGATCGTTACTACGA
TAGATGGTCAAACTTTAGXXXXXXXXXXTTCGTTGAAACTAAACGTTCTTGTGATACTCT
TACCTACTTTTTAAATCAAAGAAATTTCCCAACTACCTGTATTCATGGTGATTTAACTCA
ACCAGAAAGAGAAAATGCACTTCAATCTTTCCGTTCTTTTGCAACTCCATTCTTAGTAGC
AACTGATATTGCATCAAGAGGTCTCCACATCGGTAATGTTAATTTGGTTATCAATTTCGA
CTTGCCTACCGACATACATATCTACGTTCATCGTATTGGTAGAACCGGAAGAGCAGGAAA
AAAGGTTTAGCAATTTCCTTCTTCAATGAAAAGAATAAACCAGTTGGTGCTGAACTTTTG
AAATTAATGAAAGCTTCAAATCAAGATATTCCAGATTGGTTTGAAAAGATGGTACACAAT
CTCCGTATGTCTAAAGGTCCATCAAACTCAAAATCAAATAGTCCATTCAACAAATCTTAC
AATAGTCATCACAATAGAGATGATAACCGTGGTGGTTATGGTGGTGGTGGTGGTGGTAAT
GGAGGTTACAGTAACAACCGTAATGATAGAAGAGAAGATAAATCAGATTACTCAATGCAT
CACCCATACTTTAGCAACAATGGTGGTTCATATAATTAAACATTCACCTCATGTCATTCG
TTTAATAAAAAATAATAAATCCATTTTAATTCAATATNAATTAAAATC
sequence update 2002.10.25
Translated Amino Acid sequence 
ifihadkff*RISHFMPIGNNKDNDGTTLNISGLTISDKSSSTSSNNNTTTTTTQTSEPY
VPPSRRNKMNNSSGSSRDDYPSPSDRDNRDSPFNRDRRDDGYRGGNNFRENNSNNNNNSR
DNYKSPSFSRNNNSNGGGSSSGSGGWDNGPREQGPPRGNSYSYSPNNSFSRGGNQGGYGN
RGGSGSSFGKPANKNDRYYDRWSNF---

---FVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASR
GLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKV*qfpssmkrinqlvlnf*n**klq
ikifqiglkrwytisvclkvhqtqnqivhstnltivitiemitvvvmvvvvvvmevtvtt
vmieekinqitqcithtlatmvvhiikhsphvirliknnksiliqyxlk
Translated Amino Acid sequence (All Frames) 
Frame A:
nfhprg*iflkn*sfyanwk*qr*rwnypeylrvnhl**efvnfikqqhnnnnntn**ti
cptis*kqde**frfikrrlsiti*p**s*ftiqs*ps*rwlqrw*qf*gk*l**qqqq*
r*lqksiilkkq***www***w*rwlg*wskrtrptkr**lllftk*filsww*srwlw*
*rrkwq*fw*tsq*k*sllr*mvkl*---

---FVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASR
GLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKV*qfpssmkrinqlvlnf*n**klq
ikifqiglkrwytisvclkvhqtqnqivhstnltivitiemitvvvmvvvvvvmevtvtt
vmieekinqitqcithtlatmvvhiikhsphvirliknnksiliqyxlk

Frame B:
ifihadkff*RISHFMPIGNNKDNDGTTLNISGLTISDKSSSTSSNNNTTTTTTQTSEPY
VPPSRRNKMNNSSGSSRDDYPSPSDRDNRDSPFNRDRRDDGYRGGNNFRENNSNNNNNSR
DNYKSPSFSRNNNSNGGGSSSGSGGWDNGPREQGPPRGNSYSYSPNNSFSRGGNQGGYGN
RGGSGSSFGKPANKNDRYYDRWSNF---

---slklnvlvillptf*ikeisqlpvfmvi*lnqkekmhfnlsvllqlhs**qlilhqe
vstsvmliwlsistclptyistfivlvepeeqekrfsnfllq*ke*tswc*tfeinesfk
srysrlv*kdgtqspyv*rsiklkik*siqqilq*ssq*r**pwwlwwwwww*wrlq*qp
***krr*irllnaspil*qqwwfi*lnihlmsfv**kiinpf*fnxn*n

Frame C:
fsstrinffkelvilcqleitkitmelp*isqg*pslirvrqlhqtttqqqqqhklvnhm
shhlvetr*iivqvhqetiihhhltviivihhsivtvvtmvtevvtilgkitlittttve
ittkvhhsqetiivmvvvvvvvavvgimvqenkahqevivtlihqiihslvvvikvvmvi
eaevavvlvnqpikmivttidgqtl---

---r*n*tfl*ysyllfkskkfpnylysw*fnstrkrkctsifpffcnsilssn*ycikr
sphr*c*fgyqfrlayrhtylrssyw*nrksrkkglaisffneknkpvgaellklmkasn
qdipdwfekmvhnlrmskgpsnsksnspfnksynshhnrddnrggyggggggnggysnnr
ndrredksdysmhhpyfsnnggsyn*tftschsfnkk**ihfnsixiki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI605 (VHI605Q) /CSM/VH/VHI6-A/VHI605Q.Seq.d/                       1804   0.0
VHQ404 (VHQ404Q) /CSM/VH/VHQ4-A/VHQ404Q.Seq.d/                        938   0.0
VHP734 (VHP734Q) /CSM/VH/VHP7-B/VHP734Q.Seq.d/                        938   0.0
VHP681 (VHP681Q) /CSM/VH/VHP6-D/VHP681Q.Seq.d/                        938   0.0
VHP588 (VHP588Q) /CSM/VH/VHP5-D/VHP588Q.Seq.d/                        938   0.0
VHP118 (VHP118Q) /CSM/VH/VHP1-A/VHP118Q.Seq.d/                        938   0.0
VHO596 (VHO596Q) /CSM/VH/VHO5-D/VHO596Q.Seq.d/                        938   0.0
VHM740 (VHM740Q) /CSM/VH/VHM7-B/VHM740Q.Seq.d/                        938   0.0
VHL839 (VHL839Q) /CSM/VH/VHL8-B/VHL839Q.Seq.d/                        938   0.0
VHL166 (VHL166Q) /CSM/VH/VHL1-C/VHL166Q.Seq.d/                        938   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441863) Dictyostelium discoideum cDNA clone:ddv48i02, 3' ...   952   0.0    2
(AU061454) Dictyostelium discoideum slug cDNA, clone SLE316.      890   0.0    2
(BJ425043) Dictyostelium discoideum cDNA clone:ddv54n10, 5' ...   890   0.0    3
(BJ424768) Dictyostelium discoideum cDNA clone:ddv53c17, 5' ...   890   0.0    3
(BJ423112) Dictyostelium discoideum cDNA clone:ddv48i02, 5' ...   890   0.0    3
(BJ423020) Dictyostelium discoideum cDNA clone:ddv47f21, 5' ...   890   0.0    3
(BJ422647) Dictyostelium discoideum cDNA clone:ddv46i15, 5' ...   890   0.0    3
(BJ422317) Dictyostelium discoideum cDNA clone:ddv45e15, 5' ...   890   0.0    3
(BJ420106) Dictyostelium discoideum cDNA clone:ddv38b12, 5' ...   890   0.0    3
(BJ419348) Dictyostelium discoideum cDNA clone:ddv35g21, 5' ...   890   0.0    3
dna update 2008.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QS3) RecName: Full=Probable ATP-dependent RNA helicase ddx3;...   192   2e-79
(Q6Z4K6) RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; ...   119   5e-33
BT085991_1(BT085991|pid:none) Zea mays full-length cDNA clone ZM...   120   8e-32
(Q75HJ0) RecName: Full=DEAD-box ATP-dependent RNA helicase 37;  ...   119   1e-31
EU953399_1(EU953399|pid:none) Zea mays clone 1406878 unknown mRNA.    120   1e-31
FN357514_12(FN357514|pid:none) Schistosoma mansoni genome sequen...   121   4e-31
CP001333_316(CP001333|pid:none) Micromonas sp. RCC299 chromosome...   124   5e-31
(Q2R1M8) RecName: Full=DEAD-box ATP-dependent RNA helicase 52C; ...   116   5e-31
AY062446_1(AY062446|pid:none) Arabidopsis thaliana ATP-dependent...   117   6e-31
AM444101_1(AM444101|pid:none) Vitis vinifera contig VV78X103110....   119   1e-30
protein update 2009. 7.13
PSORT 

 psg: 0.88  gvh: 0.39  alm: 0.46  top: 0.30  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.11  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHI605 is cyt
5' end seq. ID VHI605F
5' end seq. 
>VHI605F.Seq
AATTTTCATCCACGCGGATAAATTTTTTTAAAGAATTAGTCATTTTATGCCAATTGGAAA
TAACAAAGATAACGATGGAACTACCCTGAATATCTCAGGGTTAACCATCTCTGATAAGAG
TTCGTCAACTTCATCAAACAACAACACAACAACAACAACAACACAAACTAGTGAACCATA
TGTCCCACCATCTCGTAGAAACAAGATGAATAATAGTTCAGGTTCATCAAGAGACGATTA
TCCATCACCATCTGACCGTGATAATCGTGATTCACCATTCAATCGTGACCGTCGTGACGA
TGGTTACAGAGGTGGTAACAATTTTAGGGAAAATAACTCTAATAACAACAACAACAGTAG
AGATAACTACAAAAGTCCATCATTCTCAAGAAACAATAATAGTAATGGTGGTGGTAGTAG
TAGTGGTAGCGGTGGTTGGGATAATGGTCCAAGAGAACAAGGCCCACCAAGAGGTAATAG
TTACTCTTATTCACCAAATAATTCATTCTCTCGTGGTGGTAATCAAGGTGGTTATGGTAA
TAGAGGCGGAAGTGGCAGTAGTTTTGGTAAACCAGCCAATAAAAATGATCGTTACTACGA
TAGATGGTCAAACTTTAGNNNNNNNNNN
Length of 5' end seq. 628
3' end seq. ID VHI605Z
3' end seq. 
>VHI605Z.Seq
NNNNNNNNNNTTCGTTGAAACTAAACGTTCTTGTGATACTCTTACCTACTTTTTAAATCA
AAGAAATTTCCCAACTACCTGTATTCATGGTGATTTAACTCAACCAGAAAGAGAAAATGC
ACTTCAATCTTTCCGTTCTTTTGCAACTCCATTCTTAGTAGCAACTGATATTGCATCAAG
AGGTCTCCACATCGGTAATGTTAATTTGGTTATCAATTTCGACTTGCCTACCGACATACA
TATCTACGTTCATCGTATTGGTAGAACCGGAAGAGCAGGAAAAAAGGTTTAGCAATTTCC
TTCTTCAATGAAAAGAATAAACCAGTTGGTGCTGAACTTTTGAAATTAATGAAAGCTTCA
AATCAAGATATTCCAGATTGGTTTGAAAAGATGGTACACAATCTCCGTATGTCTAAAGGT
CCATCAAACTCAAAATCAAATAGTCCATTCAACAAATCTTACAATAGTCATCACAATAGA
GATGATAACCGTGGTGGTTATGGTGGTGGTGGTGGTGGTAATGGAGGTTACAGTAACAAC
CGTAATGATAGAAGAGAAGATAAATCAGATTACTCAATGCATCACCCATACTTTAGCAAC
AATGGTGGTTCATATAATTAAACATTCACCTCATGTCATTCGTTTAATAAAAAATAATAA
ATCCATTTTAATTCAATATNAATTAAAATC
Length of 3' end seq. 690
Connected seq. ID VHI605P
Connected seq. 
>VHI605P.Seq
AATTTTCATCCACGCGGATAAATTTTTTTAAAGAATTAGTCATTTTATGCCAATTGGAAA
TAACAAAGATAACGATGGAACTACCCTGAATATCTCAGGGTTAACCATCTCTGATAAGAG
TTCGTCAACTTCATCAAACAACAACACAACAACAACAACAACACAAACTAGTGAACCATA
TGTCCCACCATCTCGTAGAAACAAGATGAATAATAGTTCAGGTTCATCAAGAGACGATTA
TCCATCACCATCTGACCGTGATAATCGTGATTCACCATTCAATCGTGACCGTCGTGACGA
TGGTTACAGAGGTGGTAACAATTTTAGGGAAAATAACTCTAATAACAACAACAACAGTAG
AGATAACTACAAAAGTCCATCATTCTCAAGAAACAATAATAGTAATGGTGGTGGTAGTAG
TAGTGGTAGCGGTGGTTGGGATAATGGTCCAAGAGAACAAGGCCCACCAAGAGGTAATAG
TTACTCTTATTCACCAAATAATTCATTCTCTCGTGGTGGTAATCAAGGTGGTTATGGTAA
TAGAGGCGGAAGTGGCAGTAGTTTTGGTAAACCAGCCAATAAAAATGATCGTTACTACGA
TAGATGGTCAAACTTTAG----------TTCGTTGAAACTAAACGTTCTTGTGATACTCT
TACCTACTTTTTAAATCAAAGAAATTTCCCAACTACCTGTATTCATGGTGATTTAACTCA
ACCAGAAAGAGAAAATGCACTTCAATCTTTCCGTTCTTTTGCAACTCCATTCTTAGTAGC
AACTGATATTGCATCAAGAGGTCTCCACATCGGTAATGTTAATTTGGTTATCAATTTCGA
CTTGCCTACCGACATACATATCTACGTTCATCGTATTGGTAGAACCGGAAGAGCAGGAAA
AAAGGTTTAGCAATTTCCTTCTTCAATGAAAAGAATAAACCAGTTGGTGCTGAACTTTTG
AAATTAATGAAAGCTTCAAATCAAGATATTCCAGATTGGTTTGAAAAGATGGTACACAAT
CTCCGTATGTCTAAAGGTCCATCAAACTCAAAATCAAATAGTCCATTCAACAAATCTTAC
AATAGTCATCACAATAGAGATGATAACCGTGGTGGTTATGGTGGTGGTGGTGGTGGTAAT
GGAGGTTACAGTAACAACCGTAATGATAGAAGAGAAGATAAATCAGATTACTCAATGCAT
CACCCATACTTTAGCAACAATGGTGGTTCATATAATTAAACATTCACCTCATGTCATTCG
TTTAATAAAAAATAATAAATCCATTTTAATTCAATATNAATTAAAATC
Length of connected seq. 1298
Full length Seq ID -
Full length Seq. -
Length of full length seq. -