VHI583 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHI583
Library	VH (Link to library)
Clone ID	VHI583 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16318-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHI5-D/VHI583Q.Seq.d/
Representative seq. ID	VHI583P (Link to Original site)
Representative DNA sequence	>VHI583 (VHI583Q) /CSM/VH/VHI5-D/VHI583Q.Seq.d/ AGCTAAAAACAATGTTATGATTCAAGGTCATCACATGAAATTATCTTTGGATAACTCAAA ATTAATGGATGCACTCAAGTATGCCTCAAACATTATCAATGAACTCCGTACAAGTTTACT TTCACCAAAATCATATTATGCTCTCTATTTAGTTGCTTTTGATTATCTTCAATACTTGAA TACTTATCTCTATGAAGAGAAACATGGTAAGAAAATGATTGAACTTTATGAAGTTGTACA ACATGCTGGTAATGTTTTACCAAGATTATATTTATTAATTACAGTTGGATCAGTTTATAT TAAAACTAAACAAGCACCAGCAAAAGATGTATTAAAAGATTTAATTGAAATGTGTAGAGG TGTTCAACATCCAACAAGAGGTTTATTTTTAAGACATTATCTTAGTGAAGTTACCAAAGA TAAATTACCAGATATTGATTCATCCGTTGAGAATGGTACAGTTATGGATTCAATTGATTT CATCATTCAAAATTTCACAGAGACTAATAAACTTTGGGTACGTATGCAACATCAAGCTCC AACCAAAGATAGAGAGAGAAGAGAGAATGAACGTTTAGAGTXXXXXXXXXXGTATTAGAC ATACTTTGGTTCCATTGGTATTCTGTTCTCTTCGTTTCATTCGTAACTTTAAACAACAAG TCGATAGTGGTGTCATCAGTTTGGATGAAAATAAATGGATTGCAATTGGTTCAAAGATTT TCACCTTTGTCAGTGAAACCATCAAAGCTTTGGCCGATATCAAATTGGCCGATCTTAGCT TTAGATTATACCTTCAAGCACTCCAAACCTTTGACCACTGTGGTTTGGTCTCTCGTGTCA AAGAATTGGCCATCAAGGCTCTCTTAATCTTCCAAGAAGATATCGCCGATTTCAAAGCTC AAGTTATGGCCCTTCAATTGTTAATCTCTACTCTCAATAGTTTAAGCATTCCAAATGAAG AGATCTATGAATCCTTGGCCGCCCAAACCATTAAACAAGCTTCTCGTCTTCTCTTACCAC AAGATCAAGCAAAACTCATCTCTACTTGTTCACATTTATTCTGGGTTGATAATCCTTCTC GTCAATATCAAAATCCAGACTCTGTATTACAAGCTCTCAAAAAAGCTCTCTCCATTATCA GTAATGAATCGAGTCCTGGTCTTGGTACATTTGTTGACATTTTGAATGAATGTCTCTTCT ATTGTGATAAAGAAACTGATGCTGTTCCAATTCAATTCGTTTCAGATTTGGTTGAATTAA TTCGTACTACTCATGTTAAAGAAGCTGATCCAGCATTACCATATTTACAAAATACTATCA AATACATTCAATCTCAAAATTATAAAGGTATTTCAATTTAAA
sequence update	2002.10.25
Translated Amino Acid sequence	AKNNVMIQGHHMKLSLDNSKLMDALKYASNIINELRTSLLSPKSYYALYLVAFDYLQYLN TYLYEEKHGKKMIELYEVVQHAGNVLPRLYLLITVGSVYIKTKQAPAKDVLKDLIEMCRG VQHPTRGLFLRHYLSEVTKDKLPDIDSSVENGTVMDSIDFIIQNFTETNKLWVRMQHQAP TKDRERRENERLE--- ---IRHTLVPLVFCSLRFIRNFKQQVDSGVISLDENKWIAIGSKIFTFVSETIKALADIK LADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLLISTLNSL SIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKK ALSIISNESSPGLGTFVDILNECLFYCDKETDAVPIQFVSDLVELIRTTHVKEADPALPY LQNTIKYIQSQNYKGISI*
Translated Amino Acid sequence (All Frames)	Frame A: skqcydsrssheiifglkingctqvclkhyqtpykftftkiilcslfscflssile ylslretwendtlscttcwcftkiifinyswislyntstskrcikrfnnvr cstsnkrfifktlssyqritryfirewysygfnfhhskfhrdtlgtyatsss nqrrekretfr--- ---vldilwfhwysvlfvsfvtlnnksivvssvwmkinglqlvqrfsplsvkpsklwpis nwpilaldytfkhskplttvvwslvsknwpsrlssskkispisklklwpfncsllsiv afqmkrsmnpwppkplnkllvfsyhkikqnssllvhiysgliillvnikiqtlyyklsk klsplsvmnrvlvlvhlltfmnvssivikklmlfqfnsfqiwlnfvllmlkkliqhyh iykilsntfnlkiikvfqfk Frame B: AKNNVMIQGHHMKLSLDNSKLMDALKYASNIINELRTSLLSPKSYYALYLVAFDYLQYLN TYLYEEKHGKKMIELYEVVQHAGNVLPRLYLLITVGSVYIKTKQAPAKDVLKDLIEMCRG VQHPTRGLFLRHYLSEVTKDKLPDIDSSVENGTVMDSIDFIIQNFTETNKLWVRMQHQAP TKDRERRENERLE--- ---ytyfgsigilfssfhslttsrwchqfgkmdcnwfkdfhlcqnhqsfgryq igrsliipsstpnlplwfglscqrighqgslnlprryrrfqsssygpsivnlysqf khskrdlilgrpnhtsfssslttrsskthlylftfilgsfssisksrlcitssqk sslhyqieswswyichfemslll*rnccsnsirfrfginsyyscrsssiti ftkyyqihsisklryfnl Frame C: lktmlfkvitnylwitqnwmhssmpqtlsmnsvqvyfhqnhimlsillliifnti lismkrnmvrklnfmklynmlvmfyqdyiylqldqfilklnkhqqkmykilkcvev fniqqevyfdiilvklpkinyqilihplrmvqlwiqlissfkisqrlinfgyvcniklq pkiereermnvs--- ---IRHTLVPLVFCSLRFIRNFKQQVDSGVISLDENKWIAIGSKIFTFVSETIKALADIK LADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLLISTLNSL SIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKK ALSIISNESSPGLGTFVDILNECLFYCDKETDAVPIQFVSDLVELIRTTHVKEADPALPY LQNTIKYIQSQNYKGISI
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHI583 (VHI583Q) /CSM/VH/VHI5-D/VHI583Q.Seq.d/ 1528 0.0 CFF491 (CFF491Q) /CSM/CF/CFF4-D/CFF491Q.Seq.d/ 1513 0.0 AHO859 (AHO859Q) /CSM/AH/AHO8-C/AHO859Q.Seq.d/ 1489 0.0 VHJ813 (VHJ813Q) /CSM/VH/VHJ8-A/VHJ813Q.Seq.d/ 1469 0.0 VHH638 (VHH638Q) /CSM/VH/VHH6-B/VHH638Q.Seq.d/ 1463 0.0 VHK662 (VHK662Q) /CSM/VH/VHK6-C/VHK662Q.Seq.d/ 1461 0.0 AHA519 (AHA519Q) /CSM/AH/AHA5-A/AHA519Q.Seq.d/ 1461 0.0 VHI863 (VHI863Q) /CSM/VH/VHI8-C/VHI863Q.Seq.d/ 1449 0.0 AHR159 (AHR159Q) /CSM/AH/AHR1-C/AHR159Q.Seq.d/ 1443 0.0 VHH532 (VHH532Q) /CSM/VH/VHH5-B/VHH532Q.Seq.d/ 1441 0.0
own update	2002.12.31
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ442084) Dictyostelium discoideum cDNA clone:ddv48e21, 3' ... 1526 0.0 1 (BJ356516) Dictyostelium discoideum cDNA clone:dda60f16, 3' ... 1489 0.0 1 (BJ442515) Dictyostelium discoideum cDNA clone:ddv50j04, 3' ... 1467 0.0 1 (BJ443345) Dictyostelium discoideum cDNA clone:ddv52k16, 3' ... 1461 0.0 1 (BJ348056) Dictyostelium discoideum cDNA clone:dda32e05, 3' ... 1461 0.0 1 (BJ442047) Dictyostelium discoideum cDNA clone:ddv48n16, 3' ... 1449 0.0 1 (BJ441349) Dictyostelium discoideum cDNA clone:ddv46o07, 3' ... 1441 0.0 1 (BJ352355) Dictyostelium discoideum cDNA clone:dda46a17, 3' ... 1439 0.0 1 (BJ372240) Dictyostelium discoideum cDNA clone:ddc11f24, 3' ... 1419 0.0 1 (BJ442307) Dictyostelium discoideum cDNA clone:ddv49p12, 3' ... 1382 0.0 1
dna update	2008.11.14
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54C24) RecName: Full=Vacuolar sorting protein 35; 496 e-139 AM425621_1(AM425621\|pid:none) Vitis vinifera contig VV78X235801.... 228 5e-58 T08858(T08858)vacuolar protein-sorting protein homolog A_TM017A0... 224 4e-57 E84556(E84556)probable vacuolar sorting-associated protein [impo... 224 4e-57 BT008553_1(BT008553\|pid:none) Arabidopsis thaliana clone U50265 ... 224 4e-57 AL928906_3(AL928906\|pid:none) Zebrafish DNA sequence from clone ... 216 2e-54 BC117573_1(BC117573\|pid:none) Danio rerio zgc:136268, mRNA (cDNA... 216 2e-54 AC108906_23(AC108906\|pid:none) Oryza sativa chromosome 3 BAC OSJ... 216 2e-54 BT059024_1(BT059024\|pid:none) Salmo salar clone ssal-rgf-521-005... 216 2e-54 AK223218_1(AK223218\|pid:none) Homo sapiens mRNA for vacuolar pro... 215 3e-54
protein update	2009. 7.13
PSORT	psg: 0.79 gvh: 0.30 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 32.0 %: cytoplasmic 16.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: endoplasmic reticulum >> prediction for VHI583 is nuc
5' end seq. ID	VHI583F
5' end seq.	>VHI583F.Seq AGCTAAAAACAATGTTATGATTCAAGGTCATCACATGAAATTATCTTTGGATAACTCAAA ATTAATGGATGCACTCAAGTATGCCTCAAACATTATCAATGAACTCCGTACAAGTTTACT TTCACCAAAATCATATTATGCTCTCTATTTAGTTGCTTTTGATTATCTTCAATACTTGAA TACTTATCTCTATGAAGAGAAACATGGTAAGAAAATGATTGAACTTTATGAAGTTGTACA ACATGCTGGTAATGTTTTACCAAGATTATATTTATTAATTACAGTTGGATCAGTTTATAT TAAAACTAAACAAGCACCAGCAAAAGATGTATTAAAAGATTTAATTGAAATGTGTAGAGG TGTTCAACATCCAACAAGAGGTTTATTTTTAAGACATTATCTTAGTGAAGTTACCAAAGA TAAATTACCAGATATTGATTCATCCGTTGAGAATGGTACAGTTATGGATTCAATTGATTT CATCATTCAAAATTTCACAGAGACTAATAAACTTTGGGTACGTATGCAACATCAAGCTCC AACCAAAGATAGAGAGAGAAGAGAGAATGAACGTTTAGAGTNNNNNNNNNN
Length of 5' end seq.	591
3' end seq. ID	VHI583Z
3' end seq.	>VHI583Z.Seq NNNNNNNNNNGTATTAGACATACTTTGGTTCCATTGGTATTCTGTTCTCTTCGTTTCATT CGTAACTTTAAACAACAAGTCGATAGTGGTGTCATCAGTTTGGATGAAAATAAATGGATT GCAATTGGTTCAAAGATTTTCACCTTTGTCAGTGAAACCATCAAAGCTTTGGCCGATATC AAATTGGCCGATCTTAGCTTTAGATTATACCTTCAAGCACTCCAAACCTTTGACCACTGT GGTTTGGTCTCTCGTGTCAAAGAATTGGCCATCAAGGCTCTCTTAATCTTCCAAGAAGAT ATCGCCGATTTCAAAGCTCAAGTTATGGCCCTTCAATTGTTAATCTCTACTCTCAATAGT TTAAGCATTCCAAATGAAGAGATCTATGAATCCTTGGCCGCCCAAACCATTAAACAAGCT TCTCGTCTTCTCTTACCACAAGATCAAGCAAAACTCATCTCTACTTGTTCACATTTATTC TGGGTTGATAATCCTTCTCGTCAATATCAAAATCCAGACTCTGTATTACAAGCTCTCAAA AAAGCTCTCTCCATTATCAGTAATGAATCGAGTCCTGGTCTTGGTACATTTGTTGACATT TTGAATGAATGTCTCTTCTATTGTGATAAAGAAACTGATGCTGTTCCAATTCAATTCGTT TCAGATTTGGTTGAATTAATTCGTACTACTCATGTTAAAGAAGCTGATCCAGCATTACCA TATTTACAAAATACTATCAAATACATTCAATCTCAAAATTATAAAGGTATTTCAATTTAA A
Length of 3' end seq.	781
Connected seq. ID	VHI583P
Connected seq.	>VHI583P.Seq AGCTAAAAACAATGTTATGATTCAAGGTCATCACATGAAATTATCTTTGGATAACTCAAA ATTAATGGATGCACTCAAGTATGCCTCAAACATTATCAATGAACTCCGTACAAGTTTACT TTCACCAAAATCATATTATGCTCTCTATTTAGTTGCTTTTGATTATCTTCAATACTTGAA TACTTATCTCTATGAAGAGAAACATGGTAAGAAAATGATTGAACTTTATGAAGTTGTACA ACATGCTGGTAATGTTTTACCAAGATTATATTTATTAATTACAGTTGGATCAGTTTATAT TAAAACTAAACAAGCACCAGCAAAAGATGTATTAAAAGATTTAATTGAAATGTGTAGAGG TGTTCAACATCCAACAAGAGGTTTATTTTTAAGACATTATCTTAGTGAAGTTACCAAAGA TAAATTACCAGATATTGATTCATCCGTTGAGAATGGTACAGTTATGGATTCAATTGATTT CATCATTCAAAATTTCACAGAGACTAATAAACTTTGGGTACGTATGCAACATCAAGCTCC AACCAAAGATAGAGAGAGAAGAGAGAATGAACGTTTAGAGT----------GTATTAGAC ATACTTTGGTTCCATTGGTATTCTGTTCTCTTCGTTTCATTCGTAACTTTAAACAACAAG TCGATAGTGGTGTCATCAGTTTGGATGAAAATAAATGGATTGCAATTGGTTCAAAGATTT TCACCTTTGTCAGTGAAACCATCAAAGCTTTGGCCGATATCAAATTGGCCGATCTTAGCT TTAGATTATACCTTCAAGCACTCCAAACCTTTGACCACTGTGGTTTGGTCTCTCGTGTCA AAGAATTGGCCATCAAGGCTCTCTTAATCTTCCAAGAAGATATCGCCGATTTCAAAGCTC AAGTTATGGCCCTTCAATTGTTAATCTCTACTCTCAATAGTTTAAGCATTCCAAATGAAG AGATCTATGAATCCTTGGCCGCCCAAACCATTAAACAAGCTTCTCGTCTTCTCTTACCAC AAGATCAAGCAAAACTCATCTCTACTTGTTCACATTTATTCTGGGTTGATAATCCTTCTC GTCAATATCAAAATCCAGACTCTGTATTACAAGCTCTCAAAAAAGCTCTCTCCATTATCA GTAATGAATCGAGTCCTGGTCTTGGTACATTTGTTGACATTTTGAATGAATGTCTCTTCT ATTGTGATAAAGAAACTGATGCTGTTCCAATTCAATTCGTTTCAGATTTGGTTGAATTAA TTCGTACTACTCATGTTAAAGAAGCTGATCCAGCATTACCATATTTACAAAATACTATCA AATACATTCAATCTCAAAATTATAAAGGTATTTCAATTTAAA
Length of connected seq.	1352
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas