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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI579
Library VH
(Link to library)
Clone ID VHI579
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13591-1
Original site URL
Representative seq. ID VHI579P
(Link to Original site)
Representative DNA sequence 
>VHI579 (VHI579Q) /CSM/VH/VHI5-D/VHI579Q.Seq.d/
ATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAATCATTAAGA
GATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAAATGGTGAA
GAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAACATGTTAAA
AAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAATGTATTGTA
AATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAATACTGCTAAAAAG
ATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATGCATTTAAT
GGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTACTGAAGCTGGTAAT
TTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACCAACTCGTCTTAAT
ATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAAAGTAGTTACCAGT
AGAGATTGGTCATTTGATGAAGCATCAATGGAAACTXXXXXXXXXXATTTCATTAAAGTC
CTTCCAGACCCAGGNGTTTTNTCATTAGCTGNTAAAATCCATTTGAAAGAGANCCAAGAG
AAATTCGATACNGCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTGGTCCTATGAT
GAGCAATCATTGGAAACTGTTTATCCAGCACTTGAAGGAAAGAAATAAAGAAAGAATTGG
TGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGA
GGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCA
CAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCAC
CTTCAAATCAATTTGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACC
ATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAAT
CAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATC
TTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGT
CTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGA
TATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGT
TGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATT
CAAATCAATTTGTAATACTAGTGATAATGCAAATTTCAATTTTGAAGCTCTCCTTTAAAA
TTAANAAAAAAATAAAAATAAAAATAAAAAAAGATAATAGAAAATAGTATTCTC
sequence update 2002.10.25
Translated Amino Acid sequence 
itni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVDEHVK
KQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWKYAFN
GGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERIKVVTS
RDWSFDEASMET---

---FIKVLPDPGVXSLAXKIHLKEXQEKFDTAFERIKEVTKVDWSYDEQSLETVYPALEG
KK*rknw*liprdy*icr**yr*tl*rgygfrkfprsnfkckdcfpsqcqskrllelef*
kq*fsnhlqinlqc***ckl*fh*nftitrcthfsl*nqferesrenq*ifrkd*rslg*
*ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km*r**ygqrrfr*snskl
*nrlpic*ktkfllgleirww*fsriiqinl*y***ckfqf*ssplklxkk*k*k*kkii
ensil
Translated Amino Acid sequence (All Frames) 
Frame A:
itni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVDEHVK
KQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWKYAFN
GGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERIKVVTS
RDWSFDEASMET---

---islksfqtqxfxh*lxksi*krxkrnsixllkelkrslk*igpmmsnhwklfiqhlk
ernkerigdlfqeiikyvadnivkrckedmvlesfleatsnakivfrhnakangywnwsf
enndlvitfksicnvsdnanfdfikilpspgvltlasrinlrenqekinesfekikevlg
ndwtydessieqvypkleennkprvgdvfaeiiryisqnivkrckdddmvkegfveatqn
ckivfqfvekqssywvwkfdggnlvvsfksicntsdnanfnfeall*n*xknknknkkr*
*kivf

Frame B:
lqtynflkcl*tlllenh*eimknt*ikhmkkskml*mvkngllnligmpfsiklmnmlk
nn*vkyfikiyvqilvnvl*mhqkmn*lknqslmqillkrly*llmkmprihpigsmhlm
vvn*ifysrkvviillklvisnyik*fqvkvlivyqlvli*krikkdlnlhskelk*lpv
eighlmkhqwk---

---fh*spsrprxfxisx*npferxpreiryxf*kn*rgh*srlvl**aiignclsst*r
keikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrlfsvtmpkqtvigigvl
ktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*erikrksmnlskrlkkswv
miglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdvkmmiwskkvslkqlki
vksssnllknkvligfgnsmvvi*syhsnqfvilvimqisilklsfkixkkikikikkdn
rk*ys

Frame C:
ykhiif*nafkpcc*kiikr**rtlk*st*rnqkcfkw*rmdy*i*lgchfr*s**tc*k
tir*sil*kfmsky**myckcikr*in*rinh*ckyc*kdcinc**rcqefillevci*w
wsiksfiqerl**yy*sw*frii*sdsk*rcl*ftnss*yekesrki*tcirkn*ssyq*
rlvi**singn---

---FIKVLPDPGVXSLAXKIHLKEXQEKFDTAFERIKEVTKVDWSYDEQSLETVYPALEG
KK*rknw*liprdy*icr**yr*tl*rgygfrkfprsnfkckdcfpsqcqskrllelef*
kq*fsnhlqinlqc***ckl*fh*nftitrcthfsl*nqferesrenq*ifrkd*rslg*
*ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km*r**ygqrrfr*snskl
*nrlpic*ktkfllgleirww*fsriiqinl*y***ckfqf*ssplklxkk*k*k*kkii
ensil
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI579 (VHI579Q) /CSM/VH/VHI5-D/VHI579Q.Seq.d/                       2755   0.0
VHO859 (VHO859Q) /CSM/VH/VHO8-C/VHO859Q.Seq.d/                       1622   0.0
VHO667 (VHO667Q) /CSM/VH/VHO6-C/VHO667Q.Seq.d/                       1608   0.0
VHA337 (VHA337Q) /CSM/VH/VHA3-B/VHA337Q.Seq.d/                       1608   0.0
VHH740 (VHH740Q) /CSM/VH/VHH7-B/VHH740Q.Seq.d/                       1606   0.0
VHP457 (VHP457Q) /CSM/VH/VHP4-C/VHP457Q.Seq.d/                       1602   0.0
VHK896 (VHK896Q) /CSM/VH/VHK8-D/VHK896Q.Seq.d/                       1598   0.0
VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/                       1598   0.0
VHJ560 (VHJ560Q) /CSM/VH/VHJ5-C/VHJ560Q.Seq.d/                       1592   0.0
VHD261 (VHD261Q) /CSM/VH/VHD2-C/VHD261Q.Seq.d/                       1586   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442124) Dictyostelium discoideum cDNA clone:ddv48m19, 3' ...  1671   0.0    2
(BJ446056) Dictyostelium discoideum cDNA clone:ddv61b16, 3' ...  1610   0.0    2
(BJ445762) Dictyostelium discoideum cDNA clone:ddv60f16, 3' ...  1362   0.0    2
(BJ445760) Dictyostelium discoideum cDNA clone:ddv60e18, 3' ...  1362   0.0    3
(BJ445626) Dictyostelium discoideum cDNA clone:ddv60i03, 3' ...  1362   0.0    4
(BJ443256) Dictyostelium discoideum cDNA clone:ddv52j12, 3' ...  1362   0.0    3
(BJ441941) Dictyostelium discoideum cDNA clone:ddv48g09, 3' ...  1362   0.0    3
(BJ441786) Dictyostelium discoideum cDNA clone:ddv47j20, 3' ...  1362   0.0    3
(BJ441357) Dictyostelium discoideum cDNA clone:ddv46p09, 3' ...  1362   0.0    4
(BJ438083) Dictyostelium discoideum cDNA clone:ddv36f08, 3' ...  1362   0.0    3
dna update 2008.11.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso...   159   3e-37
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso...   159   3e-37
AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.012
CP001581_3540(CP001581|pid:none) Clostridium botulinum A2 str. K...    37   1.4
CP000383_328(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340...    37   1.9
AF206632_1(AF206632|pid:none) Plasmodium falciparum isolate FCC1...    37   1.9
AL031745_13(AL031745|pid:none) Plasmodium falciparum DNA from MA...    36   3.2
AJ248284_9(AJ248284|pid:none) Pyrococcus abyssi complete genome;...    36   4.2
CP000962_788(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    36   4.2
AF063866_241(AF063866|pid:none) Melanoplus sanguinipes entomopox...    36   4.2
protein update 2009. 7.13
PSORT 

 psg: 0.26  gvh: 0.20  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for VHI579 is nuc
5' end seq. ID VHI579F
5' end seq. 
>VHI579F.Seq
ATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAATCATTAAGA
GATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAAATGGTGAA
GAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAACATGTTAAA
AAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAATGTATTGTA
AATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAATACTGCTAAAAAG
ATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATGCATTTAAT
GGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTACTGAAGCTGGTAAT
TTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACCAACTCGTCTTAAT
ATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAAAGTAGTTACCAGT
AGAGATTGGTCATTTGATGAAGCATCAATGGAAACTNNNNNNNNNN
Length of 5' end seq. 586
3' end seq. ID VHI579Z
3' end seq. 
>VHI579Z.Seq
NNNNNNNNNNATTTCATTAAAGTCCTTCCAGACCCAGGNGTTTTNTCATTAGCTGNTAAA
ATCCATTTGAAAGAGANCCAAGAGAAATTCGATACNGCTTTTGAAAGAATTAAAGAGGTC
ACTAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGAA
GGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGA
TAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTC
AAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTT
TGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAA
CTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAA
TTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGG
TAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAA
TAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATAT
CGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAA
TTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGA
TGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGTGATAATGCAAATTT
CAATTTTGAAGCTCTCCTTTAAAATTAANAAAAAAATAAAAATAAAAATAAAAAAAGATA
ATAGAAAATAGTATTCTC
Length of 3' end seq. 918
Connected seq. ID VHI579P
Connected seq. 
>VHI579P.Seq
ATTACAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAATCATTAAGA
GATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAAATGGTGAA
GAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAACATGTTAAA
AAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAATGTATTGTA
AATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAATACTGCTAAAAAG
ATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATGCATTTAAT
GGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTACTGAAGCTGGTAAT
TTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACCAACTCGTCTTAAT
ATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAAAGTAGTTACCAGT
AGAGATTGGTCATTTGATGAAGCATCAATGGAAACT----------ATTTCATTAAAGTC
CTTCCAGACCCAGGNGTTTTNTCATTAGCTGNTAAAATCCATTTGAAAGAGANCCAAGAG
AAATTCGATACNGCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTGGTCCTATGAT
GAGCAATCATTGGAAACTGTTTATCCAGCACTTGAAGGAAAGAAATAAAGAAAGAATTGG
TGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGA
GGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCA
CAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCAC
CTTCAAATCAATTTGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACC
ATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAAT
CAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATC
TTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGT
CTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGA
TATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGT
TGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATT
CAAATCAATTTGTAATACTAGTGATAATGCAAATTTCAATTTTGAAGCTCTCCTTTAAAA
TTAANAAAAAAATAAAAATAAAAATAAAAAAAGATAATAGAAAATAGTATTCTC
Length of connected seq. 1484
Full length Seq ID -
Full length Seq. -
Length of full length seq. -