VHI570
Library VH
(Link to library)
Clone ID VHI570
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16292-1|Contig-U16400-1
Original site URL
Representative seq. ID VHI570P
(Link to Original site)
Representative DNA sequence
>VHI570 (VHI570Q) /CSM/VH/VHI5-C/VHI570Q.Seq.d/
ATTGTTTTTTACTTTTTTTTTTAATTTTTAATTTTTTATTTAATTTAANCAATATATAAA
TCAATTAAAATAAACACTCACTCGATAGTGTAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAANTTTTTTNAAAAAAAAAXXXXXXXXXXGAAGTGATA
CCTCTTTGAATAATACATTGGATGCATTAGATAAAATCAAACAATCAGCAGTGGCATCAC
GTCGTTTATTCGTCGTGGAGGTCATGGTTGCCCATTGTGGTTATTTGGCTGCAATGAGTT
CTTTAACCTCAGGTGCTGAACGTTCATATATAATGGAAAGAGGTATCACATTGAATACAC
TAACCAAGGATTTGGAAATGTTTGTTGAACGTTTCAAACGTGAACATAGAATTGGTCTAA
TTATTAAGAGTGAACTTGCTAGCAACACCTACTCAACTCATTTCATTTATTCACTCTTCA
AAGAAGAAGGTAAACATTTATTCGATGTCCGTGAATCTATACTCGGTCATTTACAACAAG
GTGGTACTCCTTCTGCAATTGATCGTATCTTTTCAACTCGTTTAATGAATCATTATTATC
AATTCTTGGAAAACGATCTCAAAGAACATGGTCATCTTCAAATGAATGGTTGTATTGGTT
TCATTGATGGTGGTATTCATTACACTCCAATGCAAGAAATGATCGAAGAAATGTCTGATA
AATTTAGACGTCCTCGTTCCCAATGGTGGATGGATTTGGTTGA
sequence update 2002.10.25
Translated Amino Acid sequence
cfllfflifnflfnlxni*in*NKHSLDSVKEKKKKKKKKKKKKKKKXFXKKK---

---SDTSLNNTLDALDKIKQSAVASRRLFVVEVMVAHCGYLAAMSSLTSGAERSYIMERG
ITLNTLTKDLEMFVERFKREHRIGLIIKSELASNTYSTHFIYSLFKEEGKHLFDVRESIL
GHLQQGGTPSAIDRIFSTRLMNHYYQFLENDLKEHGHLQMNGCIGFIDGGIHYTPMQEMI
EEMSDKFRRPRSQWWMDLV


Translated Amino Acid sequence (All Frames)
Frame A:
ivfyfff*flifyli*xiyksikinthsiv*kkkkkkkkkkkkkkkkkxfxkk---

---evipl*iihwmh*iksnnqqwhhvvysswrswlpivviwlq*vl*pqvlnvhi*wke
vsh*ih*priwkcllnvsnvnielv*llrvnllatptqlisfihsskkkvniysmsvnly
sviynkvvlllqlivsfqlv**iiiinswktisknmvifk*mvvlvslmvvfitlqckk*
skkclinldvlvpnggwiwl

Frame B:
lfftfffnf*ffi*fxqyinqlk*tltr*ckrkkkkkkkkkkkkkkkxffxkk---

---k*ylfe*yigcir*nqtissgitsfirrgghgcplwlfgcneffnlrc*tfiyngkr
yhieytnqgfgnvc*tfqt*t*nwsny*e*tc*qhllnsfhlftlqrrr*tfircp*iyt
rsfttrwysfcn*sylfnsfnesllsilgkrsqrtwsssnewlywfh*wwyslhsnarnd
rrnv**i*tssfpmvdgfg*

Frame C:
cfllfflifnflfnlxni*in*NKHSLDSVKEKKKKKKKKKKKKKKKXFXKKK---

---SDTSLNNTLDALDKIKQSAVASRRLFVVEVMVAHCGYLAAMSSLTSGAERSYIMERG
ITLNTLTKDLEMFVERFKREHRIGLIIKSELASNTYSTHFIYSLFKEEGKHLFDVRESIL
GHLQQGGTPSAIDRIFSTRLMNHYYQFLENDLKEHGHLQMNGCIGFIDGGIHYTPMQEMI
EEMSDKFRRPRSQWWMDLV

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI570 (VHI570Q) /CSM/VH/VHI5-C/VHI570Q.Seq.d/ 1174 0.0
VHO736 (VHO736Q) /CSM/VH/VHO7-B/VHO736Q.Seq.d/ 1158 0.0
VHB407 (VHB407Q) /CSM/VH/VHB4-A/VHB407Q.Seq.d/ 1158 0.0
SHA235 (SHA235Q) /CSM/SH/SHA2-B/SHA235Q.Seq.d/ 1158 0.0
CHL203 (CHL203Q) /CSM/CH/CHL2-A/CHL203Q.Seq.d/ 1158 0.0
VHI735 (VHI735Q) /CSM/VH/VHI7-B/VHI735Q.Seq.d/ 1156 0.0
VHI548 (VHI548Q) /CSM/VH/VHI5-B/VHI548Q.Seq.d/ 1156 0.0
VHD226 (VHD226Q) /CSM/VH/VHD2-B/VHD226Q.Seq.d/ 1156 0.0
VHC779 (VHC779Q) /CSM/VH/VHC7-D/VHC779Q.Seq.d/ 1156 0.0
AHO632 (AHO632Q) /CSM/AH/AHO6-B/AHO632Q.Seq.d/ 1156 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ442036) Dictyostelium discoideum cDNA clone:ddv48k17, 3' ... 1172 0.0 1
(X94340) D.discoideum mRNA for 6-phosphofructo-1-kinase. 1156 0.0 1
(X89039) D.discoideum mRNA for 6-phosphofructo-1-kinase. 1156 0.0 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 1156 0.0 1
(BJ445699) Dictyostelium discoideum cDNA clone:ddv60h09, 3' ... 1156 0.0 1
(BJ441982) Dictyostelium discoideum cDNA clone:ddv48o11, 3' ... 1156 0.0 1
(BJ441935) Dictyostelium discoideum cDNA clone:ddv48f09, 3' ... 1156 0.0 1
(BJ438549) Dictyostelium discoideum cDNA clone:ddv37c08, 3' ... 1156 0.0 1
(BJ438274) Dictyostelium discoideum cDNA clone:ddv36n19, 3' ... 1156 0.0 1
(BJ437095) Dictyostelium discoideum cDNA clone:ddv33n02, 3' ... 1156 0.0 1
dna update 2008.11.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P90521) RecName: Full=6-phosphofructokinase; Short=Pho... 394 e-108
CP001337_2617(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 182 1e-44
AE017283_2204(AE017283|pid:none) Propionibacterium acnes KPA1712... 157 4e-37
BC081652_1(BC081652|pid:none) Danio rerio phosphofructokinase, m... 157 4e-37
(Q867C9) RecName: Full=6-phosphofructokinase, muscle type; ... 150 5e-35
BC057710_1(BC057710|pid:none) Xenopus laevis hypothetical protei... 150 5e-35
AY335614_1(AY335614|pid:none) Synthetic construct Homo sapiens p... 149 1e-34
CR858939_1(CR858939|pid:none) Pongo abelii mRNA; cDNA DKFZp468O1... 149 1e-34
DQ480147_1(DQ480147|pid:none) Sus scrofa muscle 6-phosphofructok... 149 1e-34
(P08237) RecName: Full=6-phosphofructokinase, muscle type; ... 149 1e-34
protein update 2009. 7.13
PSORT

psg: 0.03 gvh: 0.31 alm: 0.32 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.77 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: cytoplasmic
4.0 %: mitochondrial

>> prediction for VHI570 is nuc

5' end seq. ID VHI570F
5' end seq.
>VHI570F.Seq
ATTGTTTTTTACTTTTTTTTTTAATTTTTAATTTTTTATTTAATTTAANCAATATATAAA
TCAATTAAAATAAACACTCACTCGATAGTGTAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAANTTTTTTNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 171
3' end seq. ID VHI570Z
3' end seq.
>VHI570Z.Seq
NNNNNNNNNNGAAGTGATACCTCTTTGAATAATACATTGGATGCATTAGATAAAATCAAA
CAATCAGCAGTGGCATCACGTCGTTTATTCGTCGTGGAGGTCATGGTTGCCCATTGTGGT
TATTTGGCTGCAATGAGTTCTTTAACCTCAGGTGCTGAACGTTCATATATAATGGAAAGA
GGTATCACATTGAATACACTAACCAAGGATTTGGAAATGTTTGTTGAACGTTTCAAACGT
GAACATAGAATTGGTCTAATTATTAAGAGTGAACTTGCTAGCAACACCTACTCAACTCAT
TTCATTTATTCACTCTTCAAAGAAGAAGGTAAACATTTATTCGATGTCCGTGAATCTATA
CTCGGTCATTTACAACAAGGTGGTACTCCTTCTGCAATTGATCGTATCTTTTCAACTCGT
TTAATGAATCATTATTATCAATTCTTGGAAAACGATCTCAAAGAACATGGTCATCTTCAA
ATGAATGGTTGTATTGGTTTCATTGATGGTGGTATTCATTACACTCCAATGCAAGAAATG
ATCGAAGAAATGTCTGATAAATTTAGACGTCCTCGTTCCCAATGGTGGATGGATTTGGTT
GA
Length of 3' end seq. 602
Connected seq. ID VHI570P
Connected seq.
>VHI570P.Seq
ATTGTTTTTTACTTTTTTTTTTAATTTTTAATTTTTTATTTAATTTAANCAATATATAAA
TCAATTAAAATAAACACTCACTCGATAGTGTAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAANTTTTTTNAAAAAAAAA----------GAAGTGATA
CCTCTTTGAATAATACATTGGATGCATTAGATAAAATCAAACAATCAGCAGTGGCATCAC
GTCGTTTATTCGTCGTGGAGGTCATGGTTGCCCATTGTGGTTATTTGGCTGCAATGAGTT
CTTTAACCTCAGGTGCTGAACGTTCATATATAATGGAAAGAGGTATCACATTGAATACAC
TAACCAAGGATTTGGAAATGTTTGTTGAACGTTTCAAACGTGAACATAGAATTGGTCTAA
TTATTAAGAGTGAACTTGCTAGCAACACCTACTCAACTCATTTCATTTATTCACTCTTCA
AAGAAGAAGGTAAACATTTATTCGATGTCCGTGAATCTATACTCGGTCATTTACAACAAG
GTGGTACTCCTTCTGCAATTGATCGTATCTTTTCAACTCGTTTAATGAATCATTATTATC
AATTCTTGGAAAACGATCTCAAAGAACATGGTCATCTTCAAATGAATGGTTGTATTGGTT
TCATTGATGGTGGTATTCATTACACTCCAATGCAAGAAATGATCGAAGAAATGTCTGATA
AATTTAGACGTCCTCGTTCCCAATGGTGGATGGATTTGGTTGA
Length of connected seq. 753
Full length Seq ID -
Full length Seq. -
Length of full length seq. -