VHI543
Library VH
(Link to library)
Clone ID VHI543
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16283-1
Original site URL
Representative seq. ID VHI543P
(Link to Original site)
Representative DNA sequence
>VHI543 (VHI543Q) /CSM/VH/VHI5-B/VHI543Q.Seq.d/
CATAGTCCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATCTA
AAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGTTA
GAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACAAG
AAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATCAA
CTGAAGTTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGGTG
CCGTCGTTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAATTG
TAGATGATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATCTT
TAAAGGGTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAGTTTTAGAAG
TTGCTCAACATTTAGGTGATGGTATCGTTCGTTGTGTCGCTCTCGATATTACTGATGGTT
TAGGTCGTGGTGCACTCGTCCTCAACACTGGTTCCCCATTGATGGTTCCAGTCGGTCAAG
CTACCCTTGGTCGTATTATGAACGTTATTGGTGAACCAATCGATGXXXXXXXXXXCCAAA
CTNAAAATNATTATNTNATATTNNAANACTNANAAAAAAAAAAATAAAAAAAAAAATAAA
TGTGTTCAATCACTTATAATATATAGCAATAAAAAAAATAATAAAAATATTCAA
sequence update 2002.10.25
Translated Amino Acid sequence
*s*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSQE
KEYFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALIV
DDFQAENVEKVIEDLNNPSLKGKIDFNNVPISNIKLVLEVAQHLGDGIVRCVALDITDGL
GRGALVLNTGSPLMVPVGQATLGRIMNVIGEPID---

---KLKXIXXYXXTXKKKNKKKNKCVQSLIIYSNKKNNKNIQ


Translated Amino Acid sequence (All Frames)
Frame A:
hspdyyiflkqkcllledylktshklaklqlkpqfvlsqlevskllqltkpqhqhqklhk
kkntlkrirvf*iknqmknqlkliiqn*tkikvlyik*lvpslmftshtvnyhtsmml*l
*misklkmskk*lkiltthl*rvksistmfqfqtln*f*kllni*vmvsfvvslsillmv
*vvvhssstlvph*wfqsvklplvvl*tllvnqsm---

---pnxkxlxxixxlxkkkikkkinvfnhl*yiaikkiikif

Frame B:
ivliitsf*nknvcc*kii*khhtn*qncs*nlssccps*rfqnyfs*psrststknftr
kril*ke*esfr*rik*rin*s*lfkikrksrcctssnwcrr*cllptr*itihq*cfnc
r*fps*kcrksn*rs*qpifkg*nrfqqcsnfkh*isfrscstfr*wyrslcrsryy*wf
rswctrpqhwfpidgssrssypwsyyeryw*tnr---

---qtxnxyxixxxxxkkk*kkk*mcsityni*q*kk**kys

Frame C:
*s*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSQE
KEYFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALIV
DDFQAENVEKVIEDLNNPSLKGKIDFNNVPISNIKLVLEVAQHLGDGIVRCVALDITDGL
GRGALVLNTGSPLMVPVGQATLGRIMNVIGEPID---

---KLKXIXXYXXTXKKKNKKKNKCVQSLIIYSNKKNNKNIQ

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ261 (VHQ261Q) /CSM/VH/VHQ2-C/VHQ261Q.Seq.d/ 1279 0.0
VHI543 (VHI543Q) /CSM/VH/VHI5-B/VHI543Q.Seq.d/ 1279 0.0
VHE627 (VHE627Q) /CSM/VH/VHE6-B/VHE627Q.Seq.d/ 1279 0.0
VFN313 (VFN313Q) /CSM/VF/VFN3-A/VFN313Q.Seq.d/ 1279 0.0
VHG646 (VHG646Q) /CSM/VH/VHG6-B/VHG646Q.Seq.d/ 1277 0.0
VHC289 (VHC289Q) /CSM/VH/VHC2-D/VHC289Q.Seq.d/ 1277 0.0
VFM828 (VFM828Q) /CSM/VF/VFM8-B/VFM828Q.Seq.d/ 1277 0.0
VFM582 (VFM582Q) /CSM/VF/VFM5-D/VFM582Q.Seq.d/ 1277 0.0
VHK118 (VHK118Q) /CSM/VH/VHK1-A/VHK118Q.Seq.d/ 1269 0.0
VHE453 (VHE453Q) /CSM/VH/VHE4-C/VHE453Q.Seq.d/ 1261 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427789) Dictyostelium discoideum cDNA clone:ddv63i16, 5' ... 1277 0.0 1
(BJ423173) Dictyostelium discoideum cDNA clone:ddv48e11, 5' ... 1277 0.0 1
(BJ420743) Dictyostelium discoideum cDNA clone:ddv40e08, 5' ... 1277 0.0 1
(BJ416734) Dictyostelium discoideum cDNA clone:ddv27j03, 5' ... 1277 0.0 1
(BJ421962) Dictyostelium discoideum cDNA clone:ddv44k12, 5' ... 1275 0.0 1
(BJ419322) Dictyostelium discoideum cDNA clone:ddv35a24, 5' ... 1275 0.0 1
(BJ416546) Dictyostelium discoideum cDNA clone:ddv26c21, 5' ... 1275 0.0 1
(BJ416404) Dictyostelium discoideum cDNA clone:ddv26h08, 5' ... 1275 0.0 1
(BJ423980) Dictyostelium discoideum cDNA clone:ddv51c05, 5' ... 1269 0.0 1
(BJ420539) Dictyostelium discoideum cDNA clone:ddv39j14, 5' ... 1261 0.0 1
dna update 2008.11.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q1MRB8) RecName: Full=ATP synthase subunit beta; EC=3.... 113 8e-24
(A1VFJ5) RecName: Full=ATP synthase subunit beta; EC=3.... 106 7e-22
(P38482) RecName: Full=ATP synthase subunit beta, mitochondrial;... 106 7e-22
AP008207_2168(AP008207|pid:none) Oryza sativa (japonica cultivar... 106 9e-22
(Q01859) RecName: Full=ATP synthase subunit beta, mitochondrial;... 106 9e-22
D10491_1(D10491|pid:none) Oryza sativa Japonica Group atpB gene ... 106 9e-22
EF085070_1(EF085070|pid:none) Picea sitchensis clone WS02728_O12... 105 2e-21
(P42469) RecName: Full=ATP synthase subunit beta; EC=3.... 105 2e-21
Y15178_1(Y15178|pid:none) Sorghum bicolor F1-ATP synthase, culti... 104 3e-21
(P42467) RecName: Full=ATP synthase subunit beta; EC=3.... 104 3e-21
protein update 2009. 7.13
PSORT

psg: 0.65 gvh: 0.36 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.55 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: mitochondrial
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: cytoplasmic
4.0 %: plasma membrane

>> prediction for VHI543 is mit

5' end seq. ID VHI543F
5' end seq.
>VHI543F.Seq
CATAGTCCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATCTA
AAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGTTA
GAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACAAG
AAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATCAA
CTGAAGTTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGGTG
CCGTCGTTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAATTG
TAGATGATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATCTT
TAAAGGGTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAGTTTTAGAAG
TTGCTCAACATTTAGGTGATGGTATCGTTCGTTGTGTCGCTCTCGATATTACTGATGGTT
TAGGTCGTGGTGCACTCGTCCTCAACACTGGTTCCCCATTGATGGTTCCAGTCGGTCAAG
CTACCCTTGGTCGTATTATGAACGTTATTGGTGAACCAATCGATGNNNNNNNNNN
Length of 5' end seq. 655
3' end seq. ID VHI543Z
3' end seq.
>VHI543Z.Seq
NNNNNNNNNNCCAAACTNAAAATNATTATNTNATATTNNAANACTNANAAAAAAAAAAAT
AAAAAAAAAAATAAATGTGTTCAATCACTTATAATATATAGCAATAAAAAAAATAATAAA
AATATTCAA
Length of 3' end seq. 129
Connected seq. ID VHI543P
Connected seq.
>VHI543P.Seq
CATAGTCCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATCTA
AAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGTTA
GAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACAAG
AAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATCAA
CTGAAGTTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGGTG
CCGTCGTTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAATTG
TAGATGATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATCTT
TAAAGGGTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAGTTTTAGAAG
TTGCTCAACATTTAGGTGATGGTATCGTTCGTTGTGTCGCTCTCGATATTACTGATGGTT
TAGGTCGTGGTGCACTCGTCCTCAACACTGGTTCCCCATTGATGGTTCCAGTCGGTCAAG
CTACCCTTGGTCGTATTATGAACGTTATTGGTGAACCAATCGATG----------CCAAA
CTNAAAATNATTATNTNATATTNNAANACTNANAAAAAAAAAAATAAAAAAAAAAATAAA
TGTGTTCAATCACTTATAATATATAGCAATAAAAAAAATAATAAAAATATTCAA
Length of connected seq. 764
Full length Seq ID -
Full length Seq. -
Length of full length seq. -