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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI511
Library VH
(Link to library)
Clone ID VHI511
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11444-1
Original site URL
Representative seq. ID VHI511P
(Link to Original site)
Representative DNA sequence 
>VHI511 (VHI511Q) /CSM/VH/VHI5-A/VHI511Q.Seq.d/
CACTGTTGGCCTACTGGTATGTCATCAGCACATGGTTTTGTGGATGGATATATTGCACAT
TCATATTATTATCCAAAAGTTTATAAATCAGTTGGTACGTTAGATTTTATTAGATTGATT
GATGCATTATATTCAAATGATGTTACAGAGATTGATTTCACACAAATGGCAGGTATTGAA
CCATCTTCAGAGTTAAGTTTTAATTTGTTCACAGCAATTACAAGTTTACGTAATAATACT
TATTTCAAATCTGTAAATTTATCTGGTTTACCACATGCAAATATTATAAGTGCAATTGGA
ATGTGTTTAGAAACAAATAAATCAATTACAAAATTAAATTTATCAAATTTAAGAGTTGAA
CAATCATTACAACCTTTAGCAAATGGTTTAGTTAAAAATCCAAGTAATGTTATTCAAGCA
TTAGATTTATCAAAAAATAATATTCCATATCCAATTATGGCAACACTTTGTGAATGTTTT
TCTAAATTTTCACATGGTTTAGTAAGTTTAAATTTATCAAAATGTGATTTACTACCAAAA
ACAATTTCAATATTATTTGAATCATTTGAAAGAAATTTTGGAATGTCATTAGCAATTAAA
TATTTAAATTTATCACATAATAAAXXXXXXXXXXACTACCGCTGCCACTGTTGTGGCAAC
CAATAGTAGTAGTAATGTTNTTCAACATTCAATTAATATGAATAATGGTGGTAGCAATAT
CAATACTTCAAATAGTAGTGTTGGTAGTGTTAATAANACAGGCACAACTAATAATAATGT
TAATGGTAAACAACAACAACAACAACAATTAAATGGTGCAGGATCATCAACCCCAACAGT
TTTAGCTGCNCCATTTGGTGATAGAAATCAACGTTCAAGATCAAATTCAAACTTTTCAAC
AGCATCAAGTGTAATATCAAAACGTTCAAATGCATCAACAAGTGCAGNTCCTCCAAGACA
ATTAATTACNCAAACATCAGATTGGCAACCAAATGAANAAAGTGAAGCCGATATTTATGA
CNCTAGCAATAACAATAGTTTTGTTGCATACAGNACAGATGATGAAAGTGATAACTATAC
TCAAGACTNTTATGATGATAATTCCTCAAGAAAATTTAAACAACAACAACTAATGAGAAA
ATTTAAACCAAAATCAATAAAGTCAAATGCATCAGTTTTTTNTGTAAAATTTTCAGCATC
AATTAAATCAGNGTCATCAGTTAAATCAGCATCATCAGTTAAATCAACATCATCAGTTAA
ATCAGCNCCNTCAGTTAAATCCNCAAATTCAGTTAAATCCNCAAAATCCNCNCAAAAAAA
AAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
HCWPTGMSSAHGFVDGYIAHSYYYPKVYKSVGTLDFIRLIDALYSNDVTEIDFTQMAGIE
PSSELSFNLFTAITSLRNNTYFKSVNLSGLPHANIISAIGMCLETNKSITKLNLSNLRVE
QSLQPLANGLVKNPSNVIQALDLSKNNIPYPIMATLCECFSKFSHGLVSLNLSKCDLLPK
TISILFESFERNFGMSLAIKYLNLSHNK---

---TTAATVVATNSSSNVXQHSINMNNGGSNINTSNSSVGSVNXTGTTNNNVNGKQQQQQ
QLNGAGSSTPTVLAAPFGDRNQRSRSNSNFSTASSVISKRSNASTSAXPPRQLITQTSDW
QPNEXSEADIYDXSNNNSFVAYXTDDESDNYTQDXYDDNSSRKFKQQQLMRKFKPKSIKS
NASVFXVKFSASIKSXSSVKSASSVKSTSSVKSAPSVKSXNSVKSXKSXQKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
HCWPTGMSSAHGFVDGYIAHSYYYPKVYKSVGTLDFIRLIDALYSNDVTEIDFTQMAGIE
PSSELSFNLFTAITSLRNNTYFKSVNLSGLPHANIISAIGMCLETNKSITKLNLSNLRVE
QSLQPLANGLVKNPSNVIQALDLSKNNIPYPIMATLCECFSKFSHGLVSLNLSKCDLLPK
TISILFESFERNFGMSLAIKYLNLSHNK---

---TTAATVVATNSSSNVXQHSINMNNGGSNINTSNSSVGSVNXTGTTNNNVNGKQQQQQ
QLNGAGSSTPTVLAAPFGDRNQRSRSNSNFSTASSVISKRSNASTSAXPPRQLITQTSDW
QPNEXSEADIYDXSNNNSFVAYXTDDESDNYTQDXYDDNSSRKFKQQQLMRKFKPKSIKS
NASVFXVKFSASIKSXSSVKSASSVKSTSSVKSAPSVKSXNSVKSXKSXQKKK

Frame B:
tvgllvchqhmvlwmdilhihiiiqkfinqlvr*illd*lmhyiqmmlqrlishkwqvln
hlqs*vlicsqqlqvyviilisnl*iylvyhmqil*vqlecv*kqinqlqn*iyqi*eln
nhynl*qmv*lkiqvmlfkh*iyqkiifhiqlwqhfvnvflnfhmv**v*iyqnviyyqk
qfqyylnhlkeilech*qlni*iyhii---

---lplpllwqpivvvmxfniqli*imvvaisilqivvlvvlixqaqliimlmvnnnnnn
n*mvqdhqpqqf*lxhlvieinvqdqiqtfqqhqv*yqnvqmhqqvqxlqdn*lxkhqig
nqmxkvkpifmtlaitivllhtxqmmkvitilktxmmiipqenlnnnn**enlnqnq*sq
mhqffx*nfqhqlnqxhqlnqhhqlnqhhqlnqxxqlnpqiqlnpqnpxkkkn

Frame C:
llaywyvistwfcgwiyctfillsksl*iswyvrfy*id*ciifk*cyrd*fhtngry*t
ifrvkf*fvhsnykft**ylfqickfiwfttckyykcnwnvfrnk*inykikfikfks*t
iittfskwfs*ksk*cyssirfikk*ysisnygntl*mff*iftwfskfkfikm*fttkn
nfnii*ii*kkfwnvisn*ifkfit**---

---yrchccgnq****cxstfn*ye*ww*qyqyfk**cw*c**xrhn***c*w*tttttt
ikwcriinpnsfscxiw**kstfkikfklfnsikcniktfkcinkcxssktinyxnirla
tk*xk*sryl*x*q*q*fcciqxr**k**lysrll***flkki*ttttneki*tkinkvk
cisfxckifsin*ixvis*isiis*iniis*isxxs*ixkfs*ixkixxkkki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI511 (VHI511Q) /CSM/VH/VHI5-A/VHI511Q.Seq.d/                       1491   0.0
VHK389 (VHK389Q) /CSM/VH/VHK3-D/VHK389Q.Seq.d/                       1110   0.0
AHL143 (AHL143Q) /CSM/AH/AHL1-B/AHL143Q.Seq.d/                        793   0.0
AHM790 (AHM790Q) /CSM/AH/AHM7-D/AHM790Q.Seq.d/                        789   0.0
SHI253 (SHI253Q) /CSM/SH/SHI2-C/SHI253Q.Seq.d/                        587   e-166
VHA743 (VHA743Q) /CSM/VH/VHA7-B/VHA743Q.Seq.d/                        470   e-131
VHA764 (VHA764Q) /CSM/VH/VHA7-C/VHA764Q.Seq.d/                        359   7e-98
SSK353 (SSK353Q) /CSM/SS/SSK3-C/SSK353Q.Seq.d/                         46   0.001
VHB691 (VHB691Q) /CSM/VH/VHB6-D/VHB691Q.Seq.d/                         44   0.005
VHB490 (VHB490Q) /CSM/VH/VHB4-D/VHB490Q.Seq.d/                         42   0.021
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423093) Dictyostelium discoideum cDNA clone:ddv48e03, 5' ...  1237   0.0    1
(BJ424213) Dictyostelium discoideum cDNA clone:ddv51b23, 5' ...  1110   0.0    1
(BJ441843) Dictyostelium discoideum cDNA clone:ddv48e03, 3' ...   714   0.0    3
(BJ354337) Dictyostelium discoideum cDNA clone:dda53e11, 3' ...   595   e-176  2
(BJ358253) Dictyostelium discoideum cDNA clone:dda56d23, 3' ...   591   e-175  2
(BJ395903) Dictyostelium discoideum cDNA clone:dds40i14, 5' ...   587   e-163  1
(BJ436815) Dictyostelium discoideum cDNA clone:ddv32f11, 3' ...   470   e-128  1
(BJ418308) Dictyostelium discoideum cDNA clone:ddv32f11, 5' ...   468   e-127  1
(BJ418424) Dictyostelium discoideum cDNA clone:ddv32p15, 5' ...   359   2e-94  1
(BJ337248) Dictyostelium discoideum cDNA clone:dda56d23, 5' ...   325   1e-84  2
dna update 2008.11.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY437876_1(AY437876|pid:none) Mus musculus CARMIL mRNA, complete...    54   2e-05
(Q6EDY6) RecName: Full=Leucine-rich repeat-containing protein 16...    54   2e-05
FJ009082_1(FJ009082|pid:none) Homo sapiens CARMIL1a (LRRC16A) mR...    50   1e-04
BC166169_1(BC166169|pid:none) Xenopus tropicalis hypothetical pr...    48   0.001
T02764(T02764) myosin-I binding protein 125 - Acanthamoeba caste...    46   0.003
(Q8CDN9) RecName: Full=Leucine-rich repeat-containing protein 9;       42   0.050
AK019545_1(AK019545|pid:none) Mus musculus adult male testis cDN...    42   0.050
AK029802_1(AK029802|pid:none) Mus musculus adult male testis cDN...    42   0.050
AC114263_20(AC114263|pid:none) Dictyostelium discoideum chromoso...    41   0.11
AC005757_1(AC005757|pid:none) Homo sapiens chromosome 19, cosmid...    40   0.14
protein update 2009. 7.13
PSORT 

 psg: 0.86  gvh: 0.48  alm: 0.40  top: 0.43  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHI511 is cyt
5' end seq. ID VHI511F
5' end seq. 
>VHI511F.Seq
CACTGTTGGCCTACTGGTATGTCATCAGCACATGGTTTTGTGGATGGATATATTGCACAT
TCATATTATTATCCAAAAGTTTATAAATCAGTTGGTACGTTAGATTTTATTAGATTGATT
GATGCATTATATTCAAATGATGTTACAGAGATTGATTTCACACAAATGGCAGGTATTGAA
CCATCTTCAGAGTTAAGTTTTAATTTGTTCACAGCAATTACAAGTTTACGTAATAATACT
TATTTCAAATCTGTAAATTTATCTGGTTTACCACATGCAAATATTATAAGTGCAATTGGA
ATGTGTTTAGAAACAAATAAATCAATTACAAAATTAAATTTATCAAATTTAAGAGTTGAA
CAATCATTACAACCTTTAGCAAATGGTTTAGTTAAAAATCCAAGTAATGTTATTCAAGCA
TTAGATTTATCAAAAAATAATATTCCATATCCAATTATGGCAACACTTTGTGAATGTTTT
TCTAAATTTTCACATGGTTTAGTAAGTTTAAATTTATCAAAATGTGATTTACTACCAAAA
ACAATTTCAATATTATTTGAATCATTTGAAAGAAATTTTGGAATGTCATTAGCAATTAAA
TATTTAAATTTATCACATAATAAANNNNNNNNNN
Length of 5' end seq. 634
3' end seq. ID VHI511Z
3' end seq. 
>VHI511Z.Seq
NNNNNNNNNNACTACCGCTGCCACTGTTGTGGCAACCAATAGTAGTAGTAATGTTNTTCA
ACATTCAATTAATATGAATAATGGTGGTAGCAATATCAATACTTCAAATAGTAGTGTTGG
TAGTGTTAATAANACAGGCACAACTAATAATAATGTTAATGGTAAACAACAACAACAACA
ACAATTAAATGGTGCAGGATCATCAACCCCAACAGTTTTAGCTGCNCCATTTGGTGATAG
AAATCAACGTTCAAGATCAAATTCAAACTTTTCAACAGCATCAAGTGTAATATCAAAACG
TTCAAATGCATCAACAAGTGCAGNTCCTCCAAGACAATTAATTACNCAAACATCAGATTG
GCAACCAAATGAANAAAGTGAAGCCGATATTTATGACNCTAGCAATAACAATAGTTTTGT
TGCATACAGNACAGATGATGAAAGTGATAACTATACTCAAGACTNTTATGATGATAATTC
CTCAAGAAAATTTAAACAACAACAACTAATGAGAAAATTTAAACCAAAATCAATAAAGTC
AAATGCATCAGTTTTTTNTGTAAAATTTTCAGCATCAATTAAATCAGNGTCATCAGTTAA
ATCAGCATCATCAGTTAAATCAACATCATCAGTTAAATCAGCNCCNTCAGTTAAATCCNC
AAATTCAGTTAAATCCNCAAAATCCNCNCAAAAAAAAAAATA
Length of 3' end seq. 702
Connected seq. ID VHI511P
Connected seq. 
>VHI511P.Seq
CACTGTTGGCCTACTGGTATGTCATCAGCACATGGTTTTGTGGATGGATATATTGCACAT
TCATATTATTATCCAAAAGTTTATAAATCAGTTGGTACGTTAGATTTTATTAGATTGATT
GATGCATTATATTCAAATGATGTTACAGAGATTGATTTCACACAAATGGCAGGTATTGAA
CCATCTTCAGAGTTAAGTTTTAATTTGTTCACAGCAATTACAAGTTTACGTAATAATACT
TATTTCAAATCTGTAAATTTATCTGGTTTACCACATGCAAATATTATAAGTGCAATTGGA
ATGTGTTTAGAAACAAATAAATCAATTACAAAATTAAATTTATCAAATTTAAGAGTTGAA
CAATCATTACAACCTTTAGCAAATGGTTTAGTTAAAAATCCAAGTAATGTTATTCAAGCA
TTAGATTTATCAAAAAATAATATTCCATATCCAATTATGGCAACACTTTGTGAATGTTTT
TCTAAATTTTCACATGGTTTAGTAAGTTTAAATTTATCAAAATGTGATTTACTACCAAAA
ACAATTTCAATATTATTTGAATCATTTGAAAGAAATTTTGGAATGTCATTAGCAATTAAA
TATTTAAATTTATCACATAATAAA----------ACTACCGCTGCCACTGTTGTGGCAAC
CAATAGTAGTAGTAATGTTNTTCAACATTCAATTAATATGAATAATGGTGGTAGCAATAT
CAATACTTCAAATAGTAGTGTTGGTAGTGTTAATAANACAGGCACAACTAATAATAATGT
TAATGGTAAACAACAACAACAACAACAATTAAATGGTGCAGGATCATCAACCCCAACAGT
TTTAGCTGCNCCATTTGGTGATAGAAATCAACGTTCAAGATCAAATTCAAACTTTTCAAC
AGCATCAAGTGTAATATCAAAACGTTCAAATGCATCAACAAGTGCAGNTCCTCCAAGACA
ATTAATTACNCAAACATCAGATTGGCAACCAAATGAANAAAGTGAAGCCGATATTTATGA
CNCTAGCAATAACAATAGTTTTGTTGCATACAGNACAGATGATGAAAGTGATAACTATAC
TCAAGACTNTTATGATGATAATTCCTCAAGAAAATTTAAACAACAACAACTAATGAGAAA
ATTTAAACCAAAATCAATAAAGTCAAATGCATCAGTTTTTTNTGTAAAATTTTCAGCATC
AATTAAATCAGNGTCATCAGTTAAATCAGCATCATCAGTTAAATCAACATCATCAGTTAA
ATCAGCNCCNTCAGTTAAATCCNCAAATTCAGTTAAATCCNCAAAATCCNCNCAAAAAAA
AAAATA
Length of connected seq. 1316
Full length Seq ID -
Full length Seq. -
Length of full length seq. -