>VHI505 (VHI505Q) /CSM/VH/VHI5-A/VHI505Q.Seq.d/
XXXXXXXXXXTGGGATANAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAA
CGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGA
TTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACAT
GAGAGGTATCCGTNTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGG
TGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTC
CCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGG
TGGTATTTACTCTGTACTCAATCGTCGTANAGGTATTTGTTATTGGTGAAGAACGTCGTA
TCGGTTCCCCATTATTNTCTGTCAAAGCTCNTTTNCCAGTATTAGAATCNTTCGGTTTCN
C

---DXNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMR
GIRXNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGG
IYSVLNRRXGICYW*rtsyrfpiixcqssfxsirixrfx

Frame A:
---gixmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmkt*
evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls*nqst**kllpqktllv
vftlysivvxvfvigeerrigsplxsvkaxxpvlesfgf


Frame B:
---gxk*chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**khe
rypxqsl*chpph*chpqrwwsnhpncssctlcc*inclpnslrtnllsrnycprkryww
yllctqssxrylllvknvvsvphyxlsklxxqy*nxsvs


Frame C:
---DXNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMR
GIRXNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGG
IYSVLNRRXGICYW*rtsyrfpiixcqssfxsirixrfx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI505 (VHI505Q) /CSM/VH/VHI5-A/VHI505Q.Seq.d/                        888   0.0
VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/                        872   0.0
VHQ483 (VHQ483Q) /CSM/VH/VHQ4-D/VHQ483Q.Seq.d/                        872   0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/                        872   0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/                        872   0.0
VHQ453 (VHQ453Q) /CSM/VH/VHQ4-C/VHQ453Q.Seq.d/                        872   0.0
VHQ446 (VHQ446Q) /CSM/VH/VHQ4-B/VHQ446Q.Seq.d/                        872   0.0
VHQ436 (VHQ436Q) /CSM/VH/VHQ4-B/VHQ436Q.Seq.d/                        872   0.0
VHQ434 (VHQ434Q) /CSM/VH/VHQ4-B/VHQ434Q.Seq.d/                        872   0.0
VHQ410 (VHQ410Q) /CSM/VH/VHQ4-A/VHQ410Q.Seq.d/                        872   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds.   741   0.0    2
AF107286|AF107286.1 Candida albicans elongation factor 2 (EFT2) gene, partial cds.    78   7e-37  4
AF107289|AF107289.1 Candida tropicalis elongation factor 2 (EFT2) gene, partial cds.    70   3e-36  4
Y09664|Y09664.1 C.albicans EFT2 gene.                              78   4e-36  4
AF107291|AF107291.1 Candida parapsilosis elongation factor 2 (EFT2) gene, partial cds.    72   2e-35  5
AV894354|AV894354.1 Ciona intestinalis cDNA, clone:rciad38g05, 3' end, single read.   103   4e-28  2
AV851127|AV851127.1 Ciona intestinalis cDNA, clone:rcilv11c16, 3' end, single read.   103   2e-27  2
AL665323|AL665323.1 Ciona intestinalis; larval mRNA; EST 3PRIM end of clone 022ZE12 of  library directional larval cDNA library from Ciona intestinalis  (Ciona).   103   6e-27  2
AL667653|AL667653.1 Ciona intestinalis; larval mRNA; EST 5PRIM end of clone 022ZE12 of  library directional larval cDNA library from Ciona intestinalis  (Ciona).   103   6e-27  2
BW027825|BW027825.1 Ciona intestinalis cDNA, clone:rcibd009m10, 3' end, single read.   103   6e-27  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY226070_1(AY226070|pid:none) Proterospongia sp. ATCC 50818 elon...   206   9e-56
EU812174_1(EU812174|pid:none) Cyanophora paradoxa clone cpeef2-1...   202   1e-55
DQ295228_1(DQ295228|pid:none) Malawimonas jakobiformis translati...   197   2e-55
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat...   203   1e-53
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328...   201   2e-53
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088...   201   2e-53
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation...   201   4e-53
AB288080_1(AB288080|pid:none) Raphidiophrys contractilis EF2 mRN...   191   4e-53
DQ206513_1(DQ206513|pid:none) Priapulus caudatus isolate TOA66 e...   199   4e-53
AY226072_1(AY226072|pid:none) Suberites fuscus elongation factor...   199   5e-53

 psg: 0.75  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.07  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for VHI505 is nuc

>VHI505Z.Seq
NNNNNNNNNNTGGGATANAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAA
CGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGA
TTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACAT
GAGAGGTATCCGTNTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGG
TGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTC
CCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGG
TGGTATTTACTCTGTACTCAATCGTCGTANAGGTATTTGTTATTGGTGAAGAACGTCGTA
TCGGTTCCCCATTATTNTCTGTCAAAGCTCNTTTNCCAGTATTAGAATCNTTCGGTTTCN
C