VHI504
Library VH
(Link to library)
Clone ID VHI504
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHI504P
(Link to Original site)
Representative DNA sequence
>VHI504 (VHI504Q) /CSM/VH/VHI5-A/VHI504Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACXXXXXXXXXXAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAA
GGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATT
AAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAA
AACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCAC
AGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACT
GCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCT
ATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGT
CGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGT
TTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGAT
CATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCC
ACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAA
CTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAANATAGTAATCAAATCTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIK---

---WDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENM
RGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIG
GIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHW
ASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfkxsnqi*kk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsn---

---ngikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmkt
*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls*nqst**kllpqktll
vvftlysivvevlllvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvssii
glqlvlstkirkplksl*pperekv*pqksqiltnstknskqfkshfefsxivikskk

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyq---

---mg*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**kh
erypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnslrtnllsrnycprkryw
wyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmclrsl
gfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnnlsrtlsfqx**snlkk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIK---

---WDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENM
RGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIG
GIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHW
ASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfkxsnqi*kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI504 (VHI504Q) /CSM/VH/VHI5-A/VHI504Q.Seq.d/ 2258 0.0
VHO803 (VHO803Q) /CSM/VH/VHO8-A/VHO803Q.Seq.d/ 1380 0.0
VHO104 (VHO104Q) /CSM/VH/VHO1-A/VHO104Q.Seq.d/ 1380 0.0
VHJ871 (VHJ871Q) /CSM/VH/VHJ8-C/VHJ871Q.Seq.d/ 1380 0.0
VHI320 (VHI320Q) /CSM/VH/VHI3-A/VHI320Q.Seq.d/ 1380 0.0
VHH842 (VHH842Q) /CSM/VH/VHH8-B/VHH842Q.Seq.d/ 1380 0.0
VHH819 (VHH819Q) /CSM/VH/VHH8-A/VHH819Q.Seq.d/ 1380 0.0
VHD427 (VHD427Q) /CSM/VH/VHD4-B/VHD427Q.Seq.d/ 1380 0.0
VHD139 (VHD139Q) /CSM/VH/VHD1-B/VHD139Q.Seq.d/ 1380 0.0
VHD106 (VHD106Q) /CSM/VH/VHD1-A/VHD106Q.Seq.d/ 1380 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039435) Dictyostelium discoideum slug cDNA, clone SLH782. 1380 0.0 1
(BJ445613) Dictyostelium discoideum cDNA clone:ddv60f02, 3' ... 1380 0.0 1
(BJ445302) Dictyostelium discoideum cDNA clone:ddv59g01, 3' ... 1380 0.0 1
(BJ442693) Dictyostelium discoideum cDNA clone:ddv50n18, 3' ... 1380 0.0 1
(BJ441851) Dictyostelium discoideum cDNA clone:ddv48g01, 3' ... 1380 0.0 1
(BJ441560) Dictyostelium discoideum cDNA clone:ddv47h05, 3' ... 1380 0.0 1
(BJ441299) Dictyostelium discoideum cDNA clone:ddv46d12, 3' ... 1380 0.0 1
(BJ441226) Dictyostelium discoideum cDNA clone:ddv46f06, 3' ... 1380 0.0 1
(BJ438599) Dictyostelium discoideum cDNA clone:ddv37m09, 3' ... 1380 0.0 1
(BJ438565) Dictyostelium discoideum cDNA clone:ddv37f08, 3' ... 1380 0.0 1
dna update 2008.11.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 283 7e-75
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 282 1e-74
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 281 4e-74
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 281 4e-74
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 280 6e-74
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 280 7e-74
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 280 9e-74
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 278 3e-73
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 278 3e-73
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet... 278 3e-73
protein update 2009. 7.13
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHI504 is cyt

5' end seq. ID VHI504F
5' end seq.
>VHI504F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACNNNNNNNNNN
Length of 5' end seq. 493
3' end seq. ID VHI504Z
3' end seq.
>VHI504Z.Seq
NNNNNNNNNNAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGT
AACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAA
GATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAAC
ATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGA
GGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCC
TCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATT
GGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGT
ATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTC
ACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCAT
TGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACC
AGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTC
TAAACAATTTAAGTCGCACTTTGAGTTTTCAAANATAGTAATCAAATCTAAAAAAAA
Length of 3' end seq. 717
Connected seq. ID VHI504P
Connected seq.
>VHI504P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AAC----------AATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAA
GGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATT
AAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAA
AACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCAC
AGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACT
GCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCT
ATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGT
CGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGT
TTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGAT
CATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCC
ACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAA
CTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAANATAGTAATCAAATCTAAAAAAAA
Length of connected seq. 1190
Full length Seq ID -
Full length Seq. -
Length of full length seq. -