VHI478
Library VH
(Link to library)
Clone ID VHI478
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16292-1|Contig-U16400-1
Original site URL
Representative seq. ID VHI478P
(Link to Original site)
Representative DNA sequence
>VHI478 (VHI478Q) /CSM/VH/VHI4-D/VHI478Q.Seq.d/
AGGTGTGTTCACAAAAATAACAACAACACTAAAAAAAGTCTTCATTGTTTTTTACTTTTT
TTTTTAATTTTTAATTTTTTATTTAATTTAAACAATATATAAATCAATTAAAATAAACAC
TCACTCGATAGNGTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAANTTTTTTNAAAAAAAAAXXXXXXXXXXTGGATGCATTAGATAAAATCAAAC
AATCAGCAGTGGCATCACGTCGTTTATTCGTCGTGGAGGTCATGGGTGCCCATTGTGGTT
ATTTGGCTGCAATGAGTTCTTTAACCTCAGGTGCTGAACGTTCATATATAATGGAAAGAG
GTATCACATTGAATACACTAACCAAGGATTTGGAAATGTTTGTTGAACGTTTCAAACGTG
AACATAGAATTGGTCTAATTATTAAGAGTGAACTTGCTAGCAACACCTACTCAACTCATT
TCATTTATTCACTCTTCAAAGAAGAAGGTAAACATTTATTCGATGTCCGTGAATCTATAC
TCGGTCATTTACAACAAGGTGGTACTCCTTCTGCAATTGATCGTATCTTTTCAACTCGTT
TAATGAATCATTATTATCAATTCTTGGAAAACGATCTCAAAGAACATGGTCATCTTCAAA
TGAATGGTTGTATTGGTTTCATTGATGGTGGTATTCATTACACTCCAATGCAAGAAATGA
TCGAA
sequence update 2002.10.25
Translated Amino Acid sequence
rcvhknnnntkkslhcfllfflifnflfnlnni*in*NKHSLDXVKEKKKKKKKKKKKKK
KKKXFXKK---

---DALDKIKQSAVASRRLFVVEVMGAHCGYLAAMSSLTSGAERSYIMERGITLNTLTKD
LEMFVERFKREHRIGLIIKSELASNTYSTHFIYSLFKEEGKHLFDVRESILGHLQQGGTP
SAIDRIFSTRLMNHYYQFLENDLKEHGHLQMNGCIGFIDGGIHYTPMQEMIE


Translated Amino Acid sequence (All Frames)
Frame A:
rcvhknnnntkkslhcfllfflifnflfnlnni*in*NKHSLDXVKEKKKKKKKKKKKKK
KKKXFXKK---

---wmh*iksnnqqwhhvvysswrswvpivviwlq*vl*pqvlnvhi*wkevsh*ih*pr
iwkcllnvsnvnielv*llrvnllatptqlisfihsskkkvniysmsvnlysviynkvvl
llqlivsfqlv**iiiinswktisknmvifk*mvvlvslmvvfitlqckk*s

Frame B:
gvftkitttlkkvfivfyfff*flifyli*tiyksikinthsix*kkkkkkkkkkkkkkk
kkxffxkk---

---gcir*nqtissgitsfirrgghgcplwlfgcneffnlrc*tfiyngkryhieytnqg
fgnvc*tfqt*t*nwsny*e*tc*qhllnsfhlftlqrrr*tfircp*iytrsfttrwys
fcn*sylfnsfnesllsilgkrsqrtwsssnewlywfh*wwyslhsnarndr

Frame C:
vcsqk*qqh*kksslfftfffnf*ffi*fkqyinqlk*tltr*xkrkkkkkkkkkkkkkk
kkxfxkkk---

---DALDKIKQSAVASRRLFVVEVMGAHCGYLAAMSSLTSGAERSYIMERGITLNTLTKD
LEMFVERFKREHRIGLIIKSELASNTYSTHFIYSLFKEEGKHLFDVRESILGHLQQGGTP
SAIDRIFSTRLMNHYYQFLENDLKEHGHLQMNGCIGFIDGGIHYTPMQEMIE

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHD874 (VHD874Q) /CSM/VH/VHD8-D/VHD874Q.Seq.d/ 1009 0.0
VHO736 (VHO736Q) /CSM/VH/VHO7-B/VHO736Q.Seq.d/ 1009 0.0
VHM459 (VHM459Q) /CSM/VH/VHM4-C/VHM459Q.Seq.d/ 1009 0.0
VHK293 (VHK293Q) /CSM/VH/VHK2-D/VHK293Q.Seq.d/ 1009 0.0
VHJ854 (VHJ854Q) /CSM/VH/VHJ8-C/VHJ854Q.Seq.d/ 1009 0.0
VHI735 (VHI735Q) /CSM/VH/VHI7-B/VHI735Q.Seq.d/ 1009 0.0
VHI548 (VHI548Q) /CSM/VH/VHI5-B/VHI548Q.Seq.d/ 1009 0.0
VHI478 (VHI478Q) /CSM/VH/VHI4-D/VHI478Q.Seq.d/ 1009 0.0
VHE233 (VHE233Q) /CSM/VH/VHE2-B/VHE233Q.Seq.d/ 1009 0.0
VHD874 (VHD874Q) /CSM/VH/VHD8-D/VHD874Q.Seq.d/ 1009 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 1009 0.0 3
(X94340) D.discoideum mRNA for 6-phosphofructo-1-kinase. 1009 0.0 1
(X89039) D.discoideum mRNA for 6-phosphofructo-1-kinase. 1009 0.0 1
(BJ445699) Dictyostelium discoideum cDNA clone:ddv60h09, 3' ... 1009 0.0 1
(BJ444193) Dictyostelium discoideum cDNA clone:ddv55f16, 3' ... 1009 0.0 1
(BJ443086) Dictyostelium discoideum cDNA clone:ddv51i24, 3' ... 1009 0.0 1
(BJ442678) Dictyostelium discoideum cDNA clone:ddv50l14, 3' ... 1009 0.0 1
(BJ441982) Dictyostelium discoideum cDNA clone:ddv48o11, 3' ... 1009 0.0 1
(BJ441935) Dictyostelium discoideum cDNA clone:ddv48f09, 3' ... 1009 0.0 1
(BJ441796) Dictyostelium discoideum cDNA clone:ddv47l20, 3' ... 1009 0.0 1
dna update 2008.11.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P90521) RecName: Full=6-phosphofructokinase; Short=Pho... 341 2e-92
CP001337_2617(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 160 3e-38
AE017283_2204(AE017283|pid:none) Propionibacterium acnes KPA1712... 135 1e-30
BC081652_1(BC081652|pid:none) Danio rerio phosphofructokinase, m... 134 2e-30
A53206(A53206;S03880)6-phosphofructokinase (EC 2.7.1.11) C - rab... 132 1e-29
(Q867C9) RecName: Full=6-phosphofructokinase, muscle type; ... 131 2e-29
BC057710_1(BC057710|pid:none) Xenopus laevis hypothetical protei... 130 3e-29
(P47859) RecName: Full=6-phosphofructokinase type C; EC... 130 3e-29
DQ480147_1(DQ480147|pid:none) Sus scrofa muscle 6-phosphofructok... 130 5e-29
(Q01813) RecName: Full=6-phosphofructokinase type C; EC... 130 5e-29
protein update 2009. 7.13
PSORT

psg: 0.03 gvh: 0.47 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.67 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: cytoplasmic

>> prediction for VHI478 is nuc

5' end seq. ID VHI478F
5' end seq.
>VHI478F.Seq
AGGTGTGTTCACAAAAATAACAACAACACTAAAAAAAGTCTTCATTGTTTTTTACTTTTT
TTTTTAATTTTTAATTTTTTATTTAATTTAAACAATATATAAATCAATTAAAATAAACAC
TCACTCGATAGNGTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAANTTTTTTNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 216
3' end seq. ID VHI478Z
3' end seq.
>VHI478Z.Seq
NNNNNNNNNNTGGATGCATTAGATAAAATCAAACAATCAGCAGTGGCATCACGTCGTTTA
TTCGTCGTGGAGGTCATGGGTGCCCATTGTGGTTATTTGGCTGCAATGAGTTCTTTAACC
TCAGGTGCTGAACGTTCATATATAATGGAAAGAGGTATCACATTGAATACACTAACCAAG
GATTTGGAAATGTTTGTTGAACGTTTCAAACGTGAACATAGAATTGGTCTAATTATTAAG
AGTGAACTTGCTAGCAACACCTACTCAACTCATTTCATTTATTCACTCTTCAAAGAAGAA
GGTAAACATTTATTCGATGTCCGTGAATCTATACTCGGTCATTTACAACAAGGTGGTACT
CCTTCTGCAATTGATCGTATCTTTTCAACTCGTTTAATGAATCATTATTATCAATTCTTG
GAAAACGATCTCAAAGAACATGGTCATCTTCAAATGAATGGTTGTATTGGTTTCATTGAT
GGTGGTATTCATTACACTCCAATGCAAGAAATGATCGAA
Length of 3' end seq. 519
Connected seq. ID VHI478P
Connected seq.
>VHI478P.Seq
AGGTGTGTTCACAAAAATAACAACAACACTAAAAAAAGTCTTCATTGTTTTTTACTTTTT
TTTTTAATTTTTAATTTTTTATTTAATTTAAACAATATATAAATCAATTAAAATAAACAC
TCACTCGATAGNGTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAANTTTTTTNAAAAAAAAA----------TGGATGCATTAGATAAAATCAAAC
AATCAGCAGTGGCATCACGTCGTTTATTCGTCGTGGAGGTCATGGGTGCCCATTGTGGTT
ATTTGGCTGCAATGAGTTCTTTAACCTCAGGTGCTGAACGTTCATATATAATGGAAAGAG
GTATCACATTGAATACACTAACCAAGGATTTGGAAATGTTTGTTGAACGTTTCAAACGTG
AACATAGAATTGGTCTAATTATTAAGAGTGAACTTGCTAGCAACACCTACTCAACTCATT
TCATTTATTCACTCTTCAAAGAAGAAGGTAAACATTTATTCGATGTCCGTGAATCTATAC
TCGGTCATTTACAACAAGGTGGTACTCCTTCTGCAATTGATCGTATCTTTTCAACTCGTT
TAATGAATCATTATTATCAATTCTTGGAAAACGATCTCAAAGAACATGGTCATCTTCAAA
TGAATGGTTGTATTGGTTTCATTGATGGTGGTATTCATTACACTCCAATGCAAGAAATGA
TCGAA
Length of connected seq. 715
Full length Seq ID -
Full length Seq. -
Length of full length seq. -