NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI471
Library VH
(Link to library)
Clone ID VHI471
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15017-1
Original site URL
Representative seq. ID VHI471P
(Link to Original site)
Representative DNA sequence 
>VHI471 (VHI471Q) /CSM/VH/VHI4-C/VHI471Q.Seq.d/
CAACTTCTTCAATGACTTCTGTACCAAAACCATTAAAATTCTTAAGAAATCATTATTCAA
CTTTAGTAGATATTTATAAAAATTCAAAAGAAGGTAAAGCTAAAACATCATTAGCTGATA
TTTTATCAGTATTGGCAATGGCAAATGGTAATGATGAAAGAGATACACTTAAATATAAAT
TATTGGGTAGTGGTGAAGCAATTGCAAGTTGGGGACATGAATATGTTAAACATTTGGCAA
CAGAGATTGGTGTTGAATATGATATCAAAAAGGAAGAGAATCAATCAGTAGAGGATTTAT
TAAAATTGGTTGATGAGATTGTACCATTCCAAATGACACATAATGCAGAGCCAGAGGCTT
GTGATCTCCTATTGGAGGTTGAACAACTCTCAAAGATTTTCCAATACATTGACGAGAATA
ATTATAGTCGTGTTTGTCTTTATCTATTCAAATGTTCATATTATGTACCAGGTCCAGATG
ATATCAACATCTTAAAGGTTTGTGTTGAAATCTATATTAAAATGAAACAATATCCAXXXX
XXXXXXTCAGAATGTTTGATCATCTCCTTCAAAAGGGTAATGTACACATTAAACGTGCTA
TCCCATTGGCATTGGGTTTATTATCACCATCAAATCCACGTATTGCCATTATGGATATTC
TTAGTAAACTTTCACATGACAATGATCCAGAAGTTGCTCAAGGTGCCATCCTTTCATTGG
GTTTGATTGGTGCTGGTACAAATAATGCTCGTATTGGTGGTATGTTAAGAGCTTTAGCCG
TTTTCTATGGTAAAGATGTCCATTTATTCTTTGTTCGTATCGCTCAAGGTTTACTTCATT
TAGGTAAGGGTACCATGACTATCAATCCATATCATAGTGATCGTACTTTAATGTCACCAG
TGGCAGTGGGTGGTTTATTAGCTCTCTTACATGCTGGTCTCGACATTAAAAATATCCTCT
CAACTCAATCTCACTATTTATTCTTTTCAATCGTTTGTAGTATGTATCCACGTATGTTAA
TGACCCTCGATGAGGATCTTAAACCATTACCAGTAAGCGTTCGTGTTGGTCAATCCGTTG
ATATCGTTGGTTTAGCAGGAAAACCAAAAACAATCACTGGTTTCCAAACTCATACAACTC
CAGTACTCTTGGGTTATAACGAACGTGCTGAACTCGCCACTGATGATTACATTCCACTCA
CAAACATCTTAGAAGGTATTGTAATTCTTAAACCAAATCCAAATGCATCTGTAACTTCAC
CATTAGCTTCAAAAAAAAATTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
TSSMTSVPKPLKFLRNHYSTLVDIYKNSKEGKAKTSLADILSVLAMANGNDERDTLKYKL
LGSGEAIASWGHEYVKHLATEIGVEYDIKKEENQSVEDLLKLVDEIVPFQMTHNAEPEAC
DLLLEVEQLSKIFQYIDENNYSRVCLYLFKCSYYVPGPDDINILKVCVEIYIKMKQYP--
-

---RMFDHLLQKGNVHIKRAIPLALGLLSPSNPRIAIMDILSKLSHDNDPEVAQGAILSL
GLIGAGTNNARIGGMLRALAVFYGKDVHLFFVRIAQGLLHLGKGTMTINPYHSDRTLMSP
VAVGGLLALLHAGLDIKNILSTQSHYLFFSIVCSMYPRMLMTLDEDLKPLPVSVRVGQSV
DIVGLAGKPKTITGFQTHTTPVLLGYNERAELATDDYIPLTNILEGIVILKPNPNASVTS
PLASKKN*
Translated Amino Acid sequence (All Frames) 
Frame A:
qllq*llyqnh*ns*eiiiql**ifikiqkkvklkhh*lifyqywqwqmvmmkeihlnin
ywvvvkqlqvgdmnmlniwqqrlvlnmiskrkrinq*riy*nwlmrlyhsk*himqsqrl
visywrlnnsqrfsntltriiivvfvfiysnvhimyqvqmists*rfvlksilk*nni--
-

---secliisfkrvmytlnvlshwhwvyyhhqihvlplwiflvnfhmtmiqkllkvpsfh
wv*lvlvqimlvlvvc*el*pfsmvkmsiyslfvslkvyfi*vrvp*lsihiivivl*ch
qwqwvvy*lsymlvstlkissqlnltiysfqsfvvcihvc**psmrilnhyq*afvlvnp
lislv*qenqkqslvskliqlqyswvitnvlnsplmitfhsqts*kvl*flnqiqmhl*l
hh*lqkki

Frame B:
nffndfctktikilkkslfnfsryl*kfkrr*s*niis*yfisigngkw***kryt*i*i
ig*w*sncklgt*ic*tfgnrdwc*i*yqkgresisrgfikig**dctipndt*crargl
*spigg*ttlkdfpih*re*l*sclslsiqmfilctrsr*yqhlkglc*nly*netis--
-

---qnv*sspskg*cth*tcypigigfiitikstychygys**tft*q*srscsrchpfi
gfdwcwyk*csywwyvksfsrflw*rcpfilcsyrsrftsfr*gyhdyqsis**syfnvt
sgsgwfissltcwsrh*kyplnsislfilfnrl*yvstyvndpr*gs*titskrscwsir
*yrwfsrktknnhwfpnsynsstlgl*rtc*trh**lhsthkhlrrycns*tkskcicnf
tisfkkkl

Frame C:
TSSMTSVPKPLKFLRNHYSTLVDIYKNSKEGKAKTSLADILSVLAMANGNDERDTLKYKL
LGSGEAIASWGHEYVKHLATEIGVEYDIKKEENQSVEDLLKLVDEIVPFQMTHNAEPEAC
DLLLEVEQLSKIFQYIDENNYSRVCLYLFKCSYYVPGPDDINILKVCVEIYIKMKQYP--
-

---RMFDHLLQKGNVHIKRAIPLALGLLSPSNPRIAIMDILSKLSHDNDPEVAQGAILSL
GLIGAGTNNARIGGMLRALAVFYGKDVHLFFVRIAQGLLHLGKGTMTINPYHSDRTLMSP
VAVGGLLALLHAGLDIKNILSTQSHYLFFSIVCSMYPRMLMTLDEDLKPLPVSVRVGQSV
DIVGLAGKPKTITGFQTHTTPVLLGYNERAELATDDYIPLTNILEGIVILKPNPNASVTS
PLASKKN*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI471 (VHI471Q) /CSM/VH/VHI4-C/VHI471Q.Seq.d/                       2458   0.0
AFK643 (AFK643Q) /CSM/AF/AFK6-B/AFK643Q.Seq.d/                       1435   0.0
VHP515 (VHP515Q) /CSM/VH/VHP5-A/VHP515Q.Seq.d/                       1421   0.0
VHJ115 (VHJ115Q) /CSM/VH/VHJ1-A/VHJ115Q.Seq.d/                       1415   0.0
AHC802 (AHC802Q) /CSM/AH/AHC8-A/AHC802Q.Seq.d/                       1413   0.0
AHK821 (AHK821Q) /CSM/AH/AHK8-A/AHK821Q.Seq.d/                       1407   0.0
VHN685 (VHN685Q) /CSM/VH/VHN6-D/VHN685Q.Seq.d/                       1400   0.0
VHA147 (VHA147Q) /CSM/VH/VHA1-B/VHA147Q.Seq.d/                       1396   0.0
AHI633 (AHI633Q) /CSM/AH/AHI6-B/AHI633Q.Seq.d/                       1292   0.0
VHM259 (VHM259Q) /CSM/VH/VHM2-C/VHM259Q.Seq.d/                       1291   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441739) Dictyostelium discoideum cDNA clone:ddv47n18, 3' ...  1435   0.0    1
(BJ446261) Dictyostelium discoideum cDNA clone:ddv62m03, 3' ...  1421   0.0    1
(BJ442211) Dictyostelium discoideum cDNA clone:ddv49m03, 3' ...  1415   0.0    1
(BJ349289) Dictyostelium discoideum cDNA clone:dda36d02, 3' ...  1413   0.0    1
(BJ436519) Dictyostelium discoideum cDNA clone:ddv31m11, 3' ...  1394   0.0    1
(BJ445231) Dictyostelium discoideum cDNA clone:ddv58i22, 3' ...  1392   0.0    1
(BJ353982) Dictyostelium discoideum cDNA clone:dda52j06, 3' ...  1320   0.0    2
(BJ444188) Dictyostelium discoideum cDNA clone:ddv55e16, 3' ...  1291   0.0    1
(BJ343189) Dictyostelium discoideum cDNA clone:dda22e12, 3' ...  1281   0.0    1
(BJ352880) Dictyostelium discoideum cDNA clone:dda48a10, 3' ...  1257   0.0    2
dna update 2008.11.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC090101_1(BC090101|pid:none) Xenopus tropicalis proteasome (pro...   268   2e-70
BC098969_1(BC098969|pid:none) Xenopus laevis hypothetical protei...   268   2e-70
BC068911_1(BC068911|pid:none) Xenopus laevis proteasome (prosome...   268   2e-70
BT058758_1(BT058758|pid:none) Salmo salar clone ssal-rgf-501-164...   268   4e-70
AJ719640_1(AJ719640|pid:none) Gallus gallus mRNA for hypothetica...   267   5e-70
AB385107_1(AB385107|pid:none) Synthetic construct DNA, clone: pF...   266   9e-70
(Q4FZT9) RecName: Full=26S proteasome non-ATPase regulatory subu...   266   9e-70
(Q13200) RecName: Full=26S proteasome non-ATPase regulatory subu...   266   9e-70
(P56701) RecName: Full=26S proteasome non-ATPase regulatory subu...   266   9e-70
AK167774_1(AK167774|pid:none) Mus musculus CRL-1722 L5178Y-R cDN...   266   9e-70
protein update 2009. 7.13
PSORT 

 psg: 0.55  gvh: 0.60  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 28.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for VHI471 is nuc
5' end seq. ID VHI471F
5' end seq. 
>VHI471F.Seq
CAACTTCTTCAATGACTTCTGTACCAAAACCATTAAAATTCTTAAGAAATCATTATTCAA
CTTTAGTAGATATTTATAAAAATTCAAAAGAAGGTAAAGCTAAAACATCATTAGCTGATA
TTTTATCAGTATTGGCAATGGCAAATGGTAATGATGAAAGAGATACACTTAAATATAAAT
TATTGGGTAGTGGTGAAGCAATTGCAAGTTGGGGACATGAATATGTTAAACATTTGGCAA
CAGAGATTGGTGTTGAATATGATATCAAAAAGGAAGAGAATCAATCAGTAGAGGATTTAT
TAAAATTGGTTGATGAGATTGTACCATTCCAAATGACACATAATGCAGAGCCAGAGGCTT
GTGATCTCCTATTGGAGGTTGAACAACTCTCAAAGATTTTCCAATACATTGACGAGAATA
ATTATAGTCGTGTTTGTCTTTATCTATTCAAATGTTCATATTATGTACCAGGTCCAGATG
ATATCAACATCTTAAAGGTTTGTGTTGAAATCTATATTAAAATGAAACAATATCCANNNN
NNNNNN
Length of 5' end seq. 546
3' end seq. ID VHI471Z
3' end seq. 
>VHI471Z.Seq
NNNNNNNNNNTCAGAATGTTTGATCATCTCCTTCAAAAGGGTAATGTACACATTAAACGT
GCTATCCCATTGGCATTGGGTTTATTATCACCATCAAATCCACGTATTGCCATTATGGAT
ATTCTTAGTAAACTTTCACATGACAATGATCCAGAAGTTGCTCAAGGTGCCATCCTTTCA
TTGGGTTTGATTGGTGCTGGTACAAATAATGCTCGTATTGGTGGTATGTTAAGAGCTTTA
GCCGTTTTCTATGGTAAAGATGTCCATTTATTCTTTGTTCGTATCGCTCAAGGTTTACTT
CATTTAGGTAAGGGTACCATGACTATCAATCCATATCATAGTGATCGTACTTTAATGTCA
CCAGTGGCAGTGGGTGGTTTATTAGCTCTCTTACATGCTGGTCTCGACATTAAAAATATC
CTCTCAACTCAATCTCACTATTTATTCTTTTCAATCGTTTGTAGTATGTATCCACGTATG
TTAATGACCCTCGATGAGGATCTTAAACCATTACCAGTAAGCGTTCGTGTTGGTCAATCC
GTTGATATCGTTGGTTTAGCAGGAAAACCAAAAACAATCACTGGTTTCCAAACTCATACA
ACTCCAGTACTCTTGGGTTATAACGAACGTGCTGAACTCGCCACTGATGATTACATTCCA
CTCACAAACATCTTAGAAGGTATTGTAATTCTTAAACCAAATCCAAATGCATCTGTAACT
TCACCATTAGCTTCAAAAAAAAATTAA
Length of 3' end seq. 747
Connected seq. ID VHI471P
Connected seq. 
>VHI471P.Seq
CAACTTCTTCAATGACTTCTGTACCAAAACCATTAAAATTCTTAAGAAATCATTATTCAA
CTTTAGTAGATATTTATAAAAATTCAAAAGAAGGTAAAGCTAAAACATCATTAGCTGATA
TTTTATCAGTATTGGCAATGGCAAATGGTAATGATGAAAGAGATACACTTAAATATAAAT
TATTGGGTAGTGGTGAAGCAATTGCAAGTTGGGGACATGAATATGTTAAACATTTGGCAA
CAGAGATTGGTGTTGAATATGATATCAAAAAGGAAGAGAATCAATCAGTAGAGGATTTAT
TAAAATTGGTTGATGAGATTGTACCATTCCAAATGACACATAATGCAGAGCCAGAGGCTT
GTGATCTCCTATTGGAGGTTGAACAACTCTCAAAGATTTTCCAATACATTGACGAGAATA
ATTATAGTCGTGTTTGTCTTTATCTATTCAAATGTTCATATTATGTACCAGGTCCAGATG
ATATCAACATCTTAAAGGTTTGTGTTGAAATCTATATTAAAATGAAACAATATCCA----
------TCAGAATGTTTGATCATCTCCTTCAAAAGGGTAATGTACACATTAAACGTGCTA
TCCCATTGGCATTGGGTTTATTATCACCATCAAATCCACGTATTGCCATTATGGATATTC
TTAGTAAACTTTCACATGACAATGATCCAGAAGTTGCTCAAGGTGCCATCCTTTCATTGG
GTTTGATTGGTGCTGGTACAAATAATGCTCGTATTGGTGGTATGTTAAGAGCTTTAGCCG
TTTTCTATGGTAAAGATGTCCATTTATTCTTTGTTCGTATCGCTCAAGGTTTACTTCATT
TAGGTAAGGGTACCATGACTATCAATCCATATCATAGTGATCGTACTTTAATGTCACCAG
TGGCAGTGGGTGGTTTATTAGCTCTCTTACATGCTGGTCTCGACATTAAAAATATCCTCT
CAACTCAATCTCACTATTTATTCTTTTCAATCGTTTGTAGTATGTATCCACGTATGTTAA
TGACCCTCGATGAGGATCTTAAACCATTACCAGTAAGCGTTCGTGTTGGTCAATCCGTTG
ATATCGTTGGTTTAGCAGGAAAACCAAAAACAATCACTGGTTTCCAAACTCATACAACTC
CAGTACTCTTGGGTTATAACGAACGTGCTGAACTCGCCACTGATGATTACATTCCACTCA
CAAACATCTTAGAAGGTATTGTAATTCTTAAACCAAATCCAAATGCATCTGTAACTTCAC
CATTAGCTTCAAAAAAAAATTAA
Length of connected seq. 1273
Full length Seq ID -
Full length Seq. -
Length of full length seq. -