>AFO243 (AFO243Q) /CSM/AF/AFO2-B/AFO243Q.Seq.d/
XXXXXXXXXXATGTTTGGTGTTGCTTCATTGGGTTTAAAGGTCAATTTAATTACAATCAC
TCCATTATGTGAAAATATGCCATCAGGTAAAGCAACCAAACCAGGTNATATCCTTACCGC
TGCAAATGGTAAAACCGTTGAAGTCGACAATACCGATGCCGAGGGTCGTTTAATCTTGGG
TGATGCTTTACATTATGCTTGTTCATTCAAACCAACTCATATCATTGATATCGCTACCTT
GACTGGTGCCATCGATGTTGCCTTGGGTCAACATTATGCTGGTTGTTTTACAACCNCCGA
CTCACTTTGGGATCAATTAAATGAATGTGGTAACATTAGTGGTGAAAGATTATGGAGAAT
GCCATTGATTCCANAATATNGTAAACAAATGGAAACCTCAAAAGTTGCCGATTTAATCAA
TTCTGCTGGTCGTTCAGGTGGTGCNTGTTGTGCTGCTGGTTTCCTTAAAGAATTCATTAC
AGCCGATCAATCTTGGTCTCNCCTTGATATTGCTGGTGTTATGTCATCATCTGAAGATGG
NCCATACATTANAAAAGGTATGACTGGTAAACCAACTCGNACNTTAATAGAATTTGCTAA
AAAGAATCNACAATAATAAATTATTAAAATAAAAAAAAAAATAAAAAAATAAAAATGTAA
AAGTTTCTTATATATAC

---FGVASLGLKVNLITITPLCENMPSGKATKPGXILTAANGKTVEVDNTDAEGRLILGD
ALHYACSFKPTHIIDIATLTGAIDVALGQHYAGCFTTXDSLWDQLNECGNISGERLWRMP
LIPXYXKQMETSKVADLINSAGRSGGACCAAGFLKEFITADQSWSXLDIAGVMSSSEDGP
YIXKGMTGKPTRTLIEFAKKNXQ**iikikkkikk*kcksflyi

Frame A:
---clvllhwv*rsi*lqslhyvkichqvkqpnqvislplqmvkplkstipmprvv*swv
mlyimlvhsnqlislislp*lvpsmlpwvnimlvvlqppthfgin*mnvvtlvvkdygec
h*fxnxvnkwkpqklpi*sillvvqvvxvvllvslknslqpinlglxlillvlchhlkmx
htlxkv*lvnqlxx**nllkrixnnkllk*kkk*knknvkvsyiy


Frame B:
---vwccfigfkgqfnynhsim*kyair*snqtrxypyrckw*nr*srqyrcrgsfnlg*
cftlclfiqtnsyh*yryldwchrcclgstlcwlfynxrltlgsik*mw*h*w*kimena
idsxix*tngnlkscrfnqfcwsfrwcxlccwfp*rihysrsilvsp*ycwcyvii*rwx
ihxkrydw*tnsxxnric*kestiiny*nkkknkkikm*kfliy


Frame C:
---FGVASLGLKVNLITITPLCENMPSGKATKPGXILTAANGKTVEVDNTDAEGRLILGD
ALHYACSFKPTHIIDIATLTGAIDVALGQHYAGCFTTXDSLWDQLNECGNISGERLWRMP
LIPXYXKQMETSKVADLINSAGRSGGACCAAGFLKEFITADQSWSXLDIAGVMSSSEDGP
YIXKGMTGKPTRTLIEFAKKNXQ**iikikkkikk*kcksflyi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO243 (AFO243Q) /CSM/AF/AFO2-B/AFO243Q.Seq.d/                       1154   0.0
VFH631 (VFH631Q) /CSM/VF/VFH6-B/VFH631Q.Seq.d/                       1146   0.0
VFF745 (VFF745Q) /CSM/VF/VFF7-B/VFF745Q.Seq.d/                       1146   0.0
AFC225 (AFC225Q) /CSM/AF/AFC2-B/AFC225Q.Seq.d/                       1140   0.0
SFG612 (SFG612Q) /CSM/SF/SFG6-A/SFG612Q.Seq.d/                       1138   0.0
AFH192 (AFH192Q) /CSM/AF/AFH1-D/AFH192Q.Seq.d/                       1138   0.0
AFO318 (AFO318Q) /CSM/AF/AFO3-A/AFO318Q.Seq.d/                       1132   0.0
VFG447 (VFG447Q) /CSM/VF/VFG4-B/VFG447Q.Seq.d/                       1130   0.0
VFM231 (VFM231Q) /CSM/VF/VFM2-B/VFM231Q.Seq.d/                       1128   0.0
AFM877 (AFM877Q) /CSM/AF/AFM8-D/AFM877Q.Seq.d/                       1120   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AR318728|AR318728.1 Sequence 1278 from patent US 6562958.         44  0.077  2
AE000026|AE000026.2 Mycoplasma pneumoniae M129 section 54 of 63 of the complete genome.    48  0.14  1
AE009628|AE009628.1 Brucella melitensis strain 16M chromosome I, section 185 of 195 of the complete sequence.    48  0.14  1
AE014504|AE014504.1 Brucella suis 1330 chromosome I section 190 of 190 of the complete genome.    48  0.14  1
CB560903|CB560903.1 AGENCOURT_13319344 NICHD_XGC_Tad1 Xenopus laevis cDNA clone IMAGE:6878096 3', mRNA sequence.    30  0.43  4
AC111604|AC111604.4 Rattus norvegicus clone CH230-177E18, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.56  1
AE008995|AE008995.1 Agrobacterium tumefaciens strain C58 circular chromosome, section 21 of 256 of the complete sequence.    44  2.2  1
AE007962|AE007962.1 Agrobacterium tumefaciens strain C58 circular chromosome, section 20 of 254 of the complete sequence.    44  2.2  1
AC113617|AC113617.5 Homo sapiens BAC clone RP11-610B19 from 4, complete sequence.    40  6.7  5
AC141167|AC141167.2 Rattus norvegicus clone CH230-233C10, WORKING DRAFT SEQUENCE, 36 unordered pieces.    42  8.8  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5V9F0) RecName: Full=Cytosol aminopeptidase;          EC=3.4.1...   361   9e-99
BX901913_3(BX901913|pid:none) Zebrafish DNA sequence from clone ...   210   3e-53
BC068707_1(BC068707|pid:none) Xenopus laevis hypothetical protei...   210   3e-53
AJ720335_1(AJ720335|pid:none) Gallus gallus mRNA for hypothetica...   204   2e-51
FJ347751_1(FJ347751|pid:none) Crassostrea gigas leucine aminopep...   201   1e-50
FJ347745_1(FJ347745|pid:none) Crassostrea gigas leucine aminopep...   201   1e-50
FJ347727_1(FJ347727|pid:none) Crassostrea gigas leucine aminopep...   201   1e-50
FJ347749_1(FJ347749|pid:none) Crassostrea gigas leucine aminopep...   201   1e-50
FJ347720_1(FJ347720|pid:none) Crassostrea gigas leucine aminopep...   201   1e-50
FJ347736_1(FJ347736|pid:none) Crassostrea gigas leucine aminopep...   200   3e-50

 psg: 0.92  gvh: 0.38  alm: 0.37  top: 0.47  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for AFO243 is cyt

>AFO243Z.Seq
----------ATGTTTGGTGTTGCTTCATTGGGTTTAAAGGTCAATTTAATTACAATCAC
TCCATTATGTGAAAATATGCCATCAGGTAAAGCAACCAAACCAGGTNATATCCTTACCGC
TGCAAATGGTAAAACCGTTGAAGTCGACAATACCGATGCCGAGGGTCGTTTAATCTTGGG
TGATGCTTTACATTATGCTTGTTCATTCAAACCAACTCATATCATTGATATCGCTACCTT
GACTGGTGCCATCGATGTTGCCTTGGGTCAACATTATGCTGGTTGTTTTACAACCNCCGA
CTCACTTTGGGATCAATTAAATGAATGTGGTAACATTAGTGGTGAAAGATTATGGAGAAT
GCCATTGATTCCANAATATNGTAAACAAATGGAAACCTCAAAAGTTGCCGATTTAATCAA
TTCTGCTGGTCGTTCAGGTGGTGCNTGTTGTGCTGCTGGTTTCCTTAAAGAATTCATTAC
AGCCGATCAATCTTGGTCTCNCCTTGATATTGCTGGTGTTATGTCATCATCTGAAGATGG
NCCATACATTANAAAAGGTATGACTGGTAAACCAACTCGNACNTTAATAGAATTTGCTAA
AAAGAATCNACAATAATAAATTATTAAAATAAAAAAAAAAATAAAAAAATAAAAATGTAA
AAGTTTCTTATATATAC