>VHI437 (VHI437Q) /CSM/VH/VHI4-B/VHI437Q.Seq.d/
XXXXXXXXXXAGAGCAAACATTTTTAACATGTTGGAATGGATCTGTTCAAGTTGAAGGTT
TCACAGAGTCTGGTCAATTCCCACCATTACAATCTGATCCACCTCAAACTATGACTCTAT
TCGAAGAGAATGTAATTAGACCAGTTCAATTGGAATTAAGTGGTGATTCACAAGTTCAAG
GTATTGATACAAAGAGATATTATTTGGTGAATAACAGTTTCCCAATTTCAACAACTTTTA
AAACCACTATACCTGGTTTTGCAAATTTAACTGATATTCAAAATTTACCAATTTATGTTT
CACTTTGGGATATGTATGAAGTGCCACCACAATATTCTTCAAATAATTTACAAGGTTTAA
ATCAAACTTATCAAAGTGCTCAAGTACCATTGGATTTAGAACCAATCACTGGTAATGCTC
TATATTATAATTTAAAACTTCAAATTAATTTAGCAATTCCAGAGTTTTCAAATTGGTTTT
CTTCAAATTCAACTTTTAAAAATATGAAATCAAATGTATTTTATCCAATATTAAAAATTG
GTCAAACTGCAACTCCTTCACAATCAAATATTGATTTACTTAATTCTCAATTTAAATTAA
TTAAAATTTTAGGTTTTGTACCTGTAANTGTTGTTTCAANNATTGGTGGTATCATCCTTA
ATTGCTGGTATTTCAA

---EQTFLTCWNGSVQVEGFTESGQFPPLQSDPPQTMTLFEENVIRPVQLELSGDSQVQG
IDTKRYYLVNNSFPISTTFKTTIPGFANLTDIQNLPIYVSLWDMYEVPPQYSSNNLQGLN
QTYQSAQVPLDLEPITGNALYYNLKLQINLAIPEFSNWFSSNSTFKNMKSNVFYPILKIG
QTATPSQSNIDLLNSQFKLIKILGFVPVXVVSXIGGIILNCWYF

Frame A:
---EQTFLTCWNGSVQVEGFTESGQFPPLQSDPPQTMTLFEENVIRPVQLELSGDSQVQG
IDTKRYYLVNNSFPISTTFKTTIPGFANLTDIQNLPIYVSLWDMYEVPPQYSSNNLQGLN
QTYQSAQVPLDLEPITGNALYYNLKLQINLAIPEFSNWFSSNSTFKNMKSNVFYPILKIG
QTATPSQSNIDLLNSQFKLIKILGFVPVXVVSXIGGIILNCWYF


Frame B:
---skhf*hvgmdlfklkvsqslvnshhynlihlkl*lyskrm*ldqfnwn*vvihkfkv
liqrdiiw*itvsqfqqllkplylvlqi*lifkiyqfmfhfgicmkchhnilqiiykv*i
klikvlkyhwi*nqslvmlyiii*nfkli*qfqsfqigflqiqllki*nqmyfiqy*klv
klqllhnqiliylilnln*lkf*vlyl*xlfqxlvvssliagis


Frame C:
---anifnmlewicss*rfhrvwsiptiti*stsnydsirrecn*tssigikw*ftssry
*ykeilfge*qfpnfnnf*nhytwfckfn*yskftnlcftlgyv*sattiffk*ftrfks
nlskcsstigfrtnhw*csil*fktsn*fsnsrvfklvffkfnf*kyeikcilsniknws
ncnsftiky*ft*fsi*in*nfrfctcxccfxxwwyhp*llvfq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI437 (VHI437Q) /CSM/VH/VHI4-B/VHI437Q.Seq.d/                       1302   0.0
VHN138 (VHN138Q) /CSM/VH/VHN1-B/VHN138Q.Seq.d/                       1265   0.0
AHE820 (AHE820Q) /CSM/AH/AHE8-A/AHE820Q.Seq.d/                       1261   0.0
AHL815 (AHL815Q) /CSM/AH/AHL8-A/AHL815Q.Seq.d/                       1259   0.0
CHI276 (CHI276Q) /CSM/CH/CHI2-D/CHI276Q.Seq.d/                       1247   0.0
AHN870 (AHN870Q) /CSM/AH/AHN8-C/AHN870Q.Seq.d/                       1209   0.0
CHS378 (CHS378Q) /CSM/CH/CHS3-D/CHS378Q.Seq.d/                       1193   0.0
AHH424 (AHH424Q) /CSM/AH/AHH4-A/AHH424Q.Seq.d/                       1176   0.0
SHC111 (SHC111Q) /CSM/SH/SHC1-A/SHC111Q.Seq.d/                       1156   0.0
SLE393 (SLE393Q) /CSM/SL/SLE3-D/SLE393Q.Seq.d/                        977   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF124329|AF124329.1 Dictyostelium discoideum lysosomal integral membrane glycoprotein (lmpA) mRNA, complete cds.  1261   0.0    2
AF238325|AF238325.1 Dictyostelium discoideum lysosomal integral membrane protein II (lmpC) mRNA, complete cds.   127   1e-49  4
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            38   2e-06  23
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   1e-05  17
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   2e-05  11
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    32   4e-05  11
AC105765|AC105765.3 Homo sapiens chromosome 3 clone RP11-54L6, complete sequence.    38   9e-05  8
AC006782|AC006782.2 Caenorhabditis elegans clone Y47G6, WORKING DRAFT SEQUENCE, 4 unordered pieces.    36   1e-04  12
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    36   2e-04  22
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   5e-04  16

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FQ9) RecName: Full=Lysosome membrane protein 2-C; AltName: F...   231   2e-59
AF238325_1(AF238325|pid:none) Dictyostelium discoideum lysosomal...   231   2e-59
(P70110) RecName: Full=Platelet glycoprotein 4; AltName: Full=Pl...    65   2e-09
A47402(A47402) fatty acid binding/transport protein - rat  &L196...    65   2e-09
(Q07969) RecName: Full=Platelet glycoprotein 4; AltName: Full=Pl...    64   5e-09
BC091104_1(BC091104|pid:none) Rattus norvegicus similar to fatty...    63   9e-09
DQ192230_1(DQ192230|pid:none) Sus scrofa fatty acid translocase/...    61   3e-08
AK052825_1(AK052825|pid:none) Mus musculus 10 days lactation, ad...    59   1e-07
AK172162_1(AK172162|pid:none) Mus musculus activated spleen cDNA...    59   1e-07
AK150648_1(AK150648|pid:none) Mus musculus bone marrow macrophag...    58   3e-07

 psg: 0.75  gvh: 0.48  alm: 0.26  top: 0.47  tms: 0.07  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHI437 is cyt

>VHI437Z.Seq
NNNNNNNNNNAGAGCAAACATTTTTAACATGTTGGAATGGATCTGTTCAAGTTGAAGGTT
TCACAGAGTCTGGTCAATTCCCACCATTACAATCTGATCCACCTCAAACTATGACTCTAT
TCGAAGAGAATGTAATTAGACCAGTTCAATTGGAATTAAGTGGTGATTCACAAGTTCAAG
GTATTGATACAAAGAGATATTATTTGGTGAATAACAGTTTCCCAATTTCAACAACTTTTA
AAACCACTATACCTGGTTTTGCAAATTTAACTGATATTCAAAATTTACCAATTTATGTTT
CACTTTGGGATATGTATGAAGTGCCACCACAATATTCTTCAAATAATTTACAAGGTTTAA
ATCAAACTTATCAAAGTGCTCAAGTACCATTGGATTTAGAACCAATCACTGGTAATGCTC
TATATTATAATTTAAAACTTCAAATTAATTTAGCAATTCCAGAGTTTTCAAATTGGTTTT
CTTCAAATTCAACTTTTAAAAATATGAAATCAAATGTATTTTATCCAATATTAAAAATTG
GTCAAACTGCAACTCCTTCACAATCAAATATTGATTTACTTAATTCTCAATTTAAATTAA
TTAAAATTTTAGGTTTTGTACCTGTAANTGTTGTTTCAANNATTGGTGGTATCATCCTTA
ATTGCTGGTATTTCAA