VHI426
Library VH
(Link to library)
Clone ID VHI426
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12673-1
Original site URL
Representative seq. ID VHI426P
(Link to Original site)
Representative DNA sequence
>VHI426 (VHI426Q) /CSM/VH/VHI4-B/VHI426Q.Seq.d/
AAATTTAATTCCCTTTTGATATTAAACAATAACAATAATAATTTCTATAACAATAAAAAT
AATAATAGTTTTAATAAAAGATTTTATTCAACAAATAATTTAATAATGTCAGTACCATCA
TCAGTAATAGAGAATCATCTTGTACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGT
GAATCATTCAATCTATTAACAGAGAAAGAACAACTCTATGCCCATCATATTAGTGTTGCC
TGTTGGTGGGGTTCAAAAATTTGTCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTT
AATCTCTTTCAAAATCTTTTCTCAATTCAAAATTTAAAATCAACTGTTGTTCCAAATATT
GTTTCTGAAGAAGAATATTCTGATTTATTATCATATGCTGCAACTTTTTATGGTAATATG
GGTAATTACTTAAGTTTTGGTGATAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTA
CAATTAATTATTAATAAAGTTAATGATAATAAAGTCAATGAATATTGGGGTAAATGTAGT
GAATTAATGTATTCATTAGATAAACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATT
TCAACCTATTATTCACCAAATATTACAAAGGTTGAAATTGAAAAAGTACAXXXXXXXXXX
ACAANCCAATTGACCCAAAGACTGAAGTATATAAATTTGGTGAAACTTATGACAGTGTTT
TCAAATCATTGGGTTCACCAATGGAAGAATGTAGAGCAGAATGTTGTGGTATCTATTTAT
CACCAGATGAAAAGATTCTTGAACTCTTTGGTTTCACAGATCCAAAGAAAGCTGAAGATG
TCTACTATGTCAATTGGTTGATTATGGCACGTGCTGGTGTCTGTGCATTGGAATTTTATA
GTCCACCAAGTGAAGGTGCACCAGGTAAATGGAGACAAGCTCATATGCAAGCCAGATATT
GTATTTTAACAACATTCTTACGTTCTGGTATTGTCACTTTAGACAAGACTGCCGACGATG
TAATTGTCAAACTTGATAAAAGTAAAATTAGAGGTATTGGTGTTAAAGCTGTTGGTGATT
TCCTCAATAGATTAATGGTTTACAAAGCAACTGCAAATATTGATGCCTCAATCAAATTAT
TCGATGAATATACTCATGTCAATGAAGAATTCCTCGCCATTAGAGATATAGTTTTGGCTA
AAAAGAAACCAAGAAAGGTATTTGTTCAAGCTCATACATATCTCAATTCAAATGGTAAAG
TTTGTCTTCAAGATTTTGATGACTCAACTCAAGGTATGATCGATTCAATGATCACCAGAT
TTGGTAAAGATGATTCTGATATGTTATAAAGCTTTTTATTAAATTTCCAAAAAATAAAAT
AATATAAAATAAAATAAAATAAAATAAAATAAAATATAAAATAAAATAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
KFNSLLILNNNNNNFYNNKNNNSFNKRFYSTNNLIMSVPSSVIENHLVPKEIPVYRLNAR
ESFNLLTEKEQLYAHHISVACWWGSKICLGQTSIESGPIFNLFQNLFSIQNLKSTVVPNI
VSEEEYSDLLSYAATFYGNMGNYLSFGDSKFIPRISKEKLQLIINKVNDNKVNEYWGKCS
ELMYSLDKQVRELGIDGNGISTYYSPNITKVEIEKV---

---XPIDPKTEVYKFGETYDSVFKSLGSPMEECRAECCGIYLSPDEKILELFGFTDPKKA
EDVYYVNWLIMARAGVCALEFYSPPSEGAPGKWRQAHMQARYCILTTFLRSGIVTLDKTA
DDVIVKLDKSKIRGIGVKAVGDFLNRLMVYKATANIDASIKLFDEYTHVNEEFLAIRDIV
LAKKKPRKVFVQAHTYLNSNGKVCLQDFDDSTQGMIDSMITRFGKDDSDML*sfllnfqk
ik*ykik*nkik*nik*nki


Translated Amino Acid sequence (All Frames)
Frame A:
KFNSLLILNNNNNNFYNNKNNNSFNKRFYSTNNLIMSVPSSVIENHLVPKEIPVYRLNAR
ESFNLLTEKEQLYAHHISVACWWGSKICLGQTSIESGPIFNLFQNLFSIQNLKSTVVPNI
VSEEEYSDLLSYAATFYGNMGNYLSFGDSKFIPRISKEKLQLIINKVNDNKVNEYWGKCS
ELMYSLDKQVRELGIDGNGISTYYSPNITKVEIEKV---

---txqltqrlkyinlvklmtvfsnhwvhqwknveqnvvvsiyhqmkrflnslvsqiqrk
lkmstmsig*lwhvlvsvhwnfivhqvkvhqvngdklickpdivf*qhsyvlvlsl*trl
ptm*lsnlikvklevlvlkllvissid*wftkqlqilmpqsnysmnilmsmknssplei*
fwlkrnqerylfklihisiqmvkfvfkilmtqlkv*siq*spdlvkmilicykafy*isk
k*nnik*nkik*nki*nkik

Frame B:
nlipf*y*titiiisitikiiivlikdfiqqii**cqyhhq**riilyqrrfqfiv*mlv
nhsiy*qrknnsmpiilvlpvggvqkfvlvkhllkvvqslisfkifsqfki*nqllfqil
flkkniliyyhmlqlfmviwvit*vlvivnlfqefqkknyn*lliklmiiksmnigvnvv
n*cih*ink*enwvlmvmvfqpiihqilqrlklkky---

---qxn*pkd*si*iw*nl*qcfqiigftngrm*srmlwylfitr*kds*tlwfhrskes
*rcllcqlvdygtcwclcigil*stk*rctr*metssyasqilyfnniltfwychfrqdc
rrcncqt**k*n*rywc*scw*fpq*inglqsncky*clnqiir*iyscq*riprh*rys
fg*ketkkgicsssyisqfkw*slssrf**lnsrydrfndhqiw*r*f*yviklfikfpk
nkii*nkik*nkikykik*n

Frame C:
i*fpfdikq*q**fl*q*k***f**kilfnk*fnnvstiisnressctkgdsslsfkcs*
iiqsinrerttlcpsy*ccllvgfknlswsniy*kwsnl*slsksflnskfkinccskyc
f*rrif*fiiiccnflw*yg*llkfw***iysknfkrkitiny**s****sq*ilg*m**
invfir*tskrigy*w*wyfnllftkyykg*n*kst---

---XPIDPKTEVYKFGETYDSVFKSLGSPMEECRAECCGIYLSPDEKILELFGFTDPKKA
EDVYYVNWLIMARAGVCALEFYSPPSEGAPGKWRQAHMQARYCILTTFLRSGIVTLDKTA
DDVIVKLDKSKIRGIGVKAVGDFLNRLMVYKATANIDASIKLFDEYTHVNEEFLAIRDIV
LAKKKPRKVFVQAHTYLNSNGKVCLQDFDDSTQGMIDSMITRFGKDDSDML*sfllnfqk
ik*ykik*nkik*nik*nki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI426 (VHI426Q) /CSM/VH/VHI4-B/VHI426Q.Seq.d/ 2490 0.0
VHA874 (VHA874Q) /CSM/VH/VHA8-D/VHA874Q.Seq.d/ 1398 0.0
VHK861 (VHK861Q) /CSM/VH/VHK8-C/VHK861Q.Seq.d/ 1398 0.0
VHH802 (VHH802Q) /CSM/VH/VHH8-A/VHH802Q.Seq.d/ 1398 0.0
VHC703 (VHC703Q) /CSM/VH/VHC7-A/VHC703Q.Seq.d/ 1398 0.0
VHA874 (VHA874Q) /CSM/VH/VHA8-D/VHA874Q.Seq.d/ 1398 0.0
VHA452 (VHA452Q) /CSM/VH/VHA4-C/VHA452Q.Seq.d/ 1398 0.0
AHO251 (AHO251Q) /CSM/AH/AHO2-C/AHO251Q.Seq.d/ 1398 0.0
AHK344 (AHK344Q) /CSM/AH/AHK3-B/AHK344Q.Seq.d/ 1398 0.0
AFN796 (AFN796Q) /CSM/AF/AFN7-D/AFN796Q.Seq.d/ 1398 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ443339) Dictyostelium discoideum cDNA clone:ddv52j16, 3' ... 1398 0.0 1
(BJ441614) Dictyostelium discoideum cDNA clone:ddv47d08, 3' ... 1398 0.0 1
(BJ441215) Dictyostelium discoideum cDNA clone:ddv46d02, 3' ... 1398 0.0 1
(BJ438004) Dictyostelium discoideum cDNA clone:ddv36f01, 3' ... 1398 0.0 1
(BJ436826) Dictyostelium discoideum cDNA clone:ddv32h12, 3' ... 1398 0.0 1
(BJ436576) Dictyostelium discoideum cDNA clone:ddv31h14, 3' ... 1398 0.0 1
(BJ356189) Dictyostelium discoideum cDNA clone:dda59e14, 3' ... 1398 0.0 1
(BJ353762) Dictyostelium discoideum cDNA clone:dda51h11, 3' ... 1398 0.0 1
(BJ345836) Dictyostelium discoideum cDNA clone:dda28p23, 3' ... 1398 0.0 1
(BJ441369) Dictyostelium discoideum cDNA clone:ddv46b15, 3' ... 1396 0.0 1
dna update 2008.11.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(A7RZW4) RecName: Full=Dipeptidyl-peptidase 3; EC=3.4.1... 187 8e-46
(Q08225) RecName: Full=Probable dipeptidyl-peptidase 3; ... 179 4e-45
X91067_8(X91067|pid:none) S.cerevisiae DNA from chromosome XV (c... 179 4e-45
BC043905_1(BC043905|pid:none) Xenopus laevis dipeptidylpeptidase... 176 1e-42
BC077244_1(BC077244|pid:none) Xenopus laevis dipeptidylpeptidase... 176 2e-42
AY051625_1(AY051625|pid:none) Drosophila melanogaster GH27411 fu... 172 3e-41
BT001516_1(BT001516|pid:none) Drosophila melanogaster LP10840 fu... 172 3e-41
(Q9VHR8) RecName: Full=Dipeptidyl-peptidase 3; EC=3.4.1... 172 3e-41
BC075771_1(BC075771|pid:none) Danio rerio dipeptidylpeptidase 3,... 171 5e-41
AM494942_94(AM494942|pid:none) Leishmania braziliensis chromosom... 169 2e-40
protein update 2009. 7.13
PSORT

psg: 0.82 gvh: 0.27 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.05
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial

>> prediction for VHI426 is nuc

5' end seq. ID VHI426F
5' end seq.
>VHI426F.Seq
AAATTTAATTCCCTTTTGATATTAAACAATAACAATAATAATTTCTATAACAATAAAAAT
AATAATAGTTTTAATAAAAGATTTTATTCAACAAATAATTTAATAATGTCAGTACCATCA
TCAGTAATAGAGAATCATCTTGTACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGT
GAATCATTCAATCTATTAACAGAGAAAGAACAACTCTATGCCCATCATATTAGTGTTGCC
TGTTGGTGGGGTTCAAAAATTTGTCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTT
AATCTCTTTCAAAATCTTTTCTCAATTCAAAATTTAAAATCAACTGTTGTTCCAAATATT
GTTTCTGAAGAAGAATATTCTGATTTATTATCATATGCTGCAACTTTTTATGGTAATATG
GGTAATTACTTAAGTTTTGGTGATAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTA
CAATTAATTATTAATAAAGTTAATGATAATAAAGTCAATGAATATTGGGGTAAATGTAGT
GAATTAATGTATTCATTAGATAAACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATT
TCAACCTATTATTCACCAAATATTACAAAGGTTGAAATTGAAAAAGTACANNNNNNNNNN
Length of 5' end seq. 660
3' end seq. ID VHI426Z
3' end seq.
>VHI426Z.Seq
NNNNNNNNNNACAANCCAATTGACCCAAAGACTGAAGTATATAAATTTGGTGAAACTTAT
GACAGTGTTTTCAAATCATTGGGTTCACCAATGGAAGAATGTAGAGCAGAATGTTGTGGT
ATCTATTTATCACCAGATGAAAAGATTCTTGAACTCTTTGGTTTCACAGATCCAAAGAAA
GCTGAAGATGTCTACTATGTCAATTGGTTGATTATGGCACGTGCTGGTGTCTGTGCATTG
GAATTTTATAGTCCACCAAGTGAAGGTGCACCAGGTAAATGGAGACAAGCTCATATGCAA
GCCAGATATTGTATTTTAACAACATTCTTACGTTCTGGTATTGTCACTTTAGACAAGACT
GCCGACGATGTAATTGTCAAACTTGATAAAAGTAAAATTAGAGGTATTGGTGTTAAAGCT
GTTGGTGATTTCCTCAATAGATTAATGGTTTACAAAGCAACTGCAAATATTGATGCCTCA
ATCAAATTATTCGATGAATATACTCATGTCAATGAAGAATTCCTCGCCATTAGAGATATA
GTTTTGGCTAAAAAGAAACCAAGAAAGGTATTTGTTCAAGCTCATACATATCTCAATTCA
AATGGTAAAGTTTGTCTTCAAGATTTTGATGACTCAACTCAAGGTATGATCGATTCAATG
ATCACCAGATTTGGTAAAGATGATTCTGATATGTTATAAAGCTTTTTATTAAATTTCCAA
AAAATAAAATAATATAAAATAAAATAAAATAAAATAAAATAAAATATAAAATAAAATAAA
ATA
Length of 3' end seq. 783
Connected seq. ID VHI426P
Connected seq.
>VHI426P.Seq
AAATTTAATTCCCTTTTGATATTAAACAATAACAATAATAATTTCTATAACAATAAAAAT
AATAATAGTTTTAATAAAAGATTTTATTCAACAAATAATTTAATAATGTCAGTACCATCA
TCAGTAATAGAGAATCATCTTGTACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGT
GAATCATTCAATCTATTAACAGAGAAAGAACAACTCTATGCCCATCATATTAGTGTTGCC
TGTTGGTGGGGTTCAAAAATTTGTCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTT
AATCTCTTTCAAAATCTTTTCTCAATTCAAAATTTAAAATCAACTGTTGTTCCAAATATT
GTTTCTGAAGAAGAATATTCTGATTTATTATCATATGCTGCAACTTTTTATGGTAATATG
GGTAATTACTTAAGTTTTGGTGATAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTA
CAATTAATTATTAATAAAGTTAATGATAATAAAGTCAATGAATATTGGGGTAAATGTAGT
GAATTAATGTATTCATTAGATAAACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATT
TCAACCTATTATTCACCAAATATTACAAAGGTTGAAATTGAAAAAGTACA----------
ACAANCCAATTGACCCAAAGACTGAAGTATATAAATTTGGTGAAACTTATGACAGTGTTT
TCAAATCATTGGGTTCACCAATGGAAGAATGTAGAGCAGAATGTTGTGGTATCTATTTAT
CACCAGATGAAAAGATTCTTGAACTCTTTGGTTTCACAGATCCAAAGAAAGCTGAAGATG
TCTACTATGTCAATTGGTTGATTATGGCACGTGCTGGTGTCTGTGCATTGGAATTTTATA
GTCCACCAAGTGAAGGTGCACCAGGTAAATGGAGACAAGCTCATATGCAAGCCAGATATT
GTATTTTAACAACATTCTTACGTTCTGGTATTGTCACTTTAGACAAGACTGCCGACGATG
TAATTGTCAAACTTGATAAAAGTAAAATTAGAGGTATTGGTGTTAAAGCTGTTGGTGATT
TCCTCAATAGATTAATGGTTTACAAAGCAACTGCAAATATTGATGCCTCAATCAAATTAT
TCGATGAATATACTCATGTCAATGAAGAATTCCTCGCCATTAGAGATATAGTTTTGGCTA
AAAAGAAACCAAGAAAGGTATTTGTTCAAGCTCATACATATCTCAATTCAAATGGTAAAG
TTTGTCTTCAAGATTTTGATGACTCAACTCAAGGTATGATCGATTCAATGATCACCAGAT
TTGGTAAAGATGATTCTGATATGTTATAAAGCTTTTTATTAAATTTCCAAAAAATAAAAT
AATATAAAATAAAATAAAATAAAATAAAATAAAATATAAAATAAAATAAAATA
Length of connected seq. 1423
Full length Seq ID -
Full length Seq. -
Length of full length seq. -