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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI417
Library VH
(Link to library)
Clone ID VHI417
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15033-1
Original site URL
Representative seq. ID VHI417P
(Link to Original site)
Representative DNA sequence 
>VHI417 (VHI417Q) /CSM/VH/VHI4-A/VHI417Q.Seq.d/
ATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAA
TATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCAC
CATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATA
ATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTG
GATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATG
TAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGG
GAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTG
CAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAAT
TTAATTCNGTTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAG
AGGCAGCAAGTTATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAATTTTCATAG
TCTATGAAAATACGATTGTACCAGAXXXXXXXXXXTATATTCAACTACCATCACATTATT
GTACCGATGGTACAAAGGGTTAAAAATAATAAAAAGAGTGGTTCAAGTGTAGTTTGGTCA
ATTTGTAATGATGGTAATGATTGGATGTGGAGTGAAAGATCACCATTAAATTCTGGTCCA
ATGGTACAAATATTAGATTATCCAATTTTAATTGTTTATGGTACAATTGGAAGTGAACAA
CAAACCAATCAACGTCAACAATCTGCAGTTTATTTATCAAATGTTTTAATGTATCAAATG
AGATATTCAATAAATGTTTTAGAGGATACTCAATTCACAAATGACTTATTCACAACTTAT
AATGTAATATTTATGGGAGGCCCACAAACAAATAAAGCAGTTTACTCAATTCAATCAGTT
TTACCATCACCAATTGGTTTCCATGGTTCAAGTGATAATATGTCATTCTCTTTAAATGAT
GATTCAAATATGTTTTCAGGTCCTTCTGTTGGTTTATTGTTTTTATCATCATGTTATTCA
CCAGAGGCCATTATGAAAATTACACCAAAAGAACGTTATACTCAAGCTAGACAAGGTTGT
ATGCTTACAGTTATTGAGGGTACTGATACTATTGGTTTCCAAAATAGTCTTTTCAATTTC
CCAACTAAATCATCTTTCCCAATGCCAGATTTCATGATATTAGGTCCAAATTTTGGTTAT
CAAGGTGTATCGGGTGCTAATGCTCTGGATTTGGGATAATAATTGGCAACTATCGACCTT
TCTTATAAACTTCAATTTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
syk*IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNCYGGIDN
IPIGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGTYFSGWG
ISTFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSVQLSSGTHQLKVRIIGSE
AASYQCEIITTKEEQSIFIVYENTIVP---

---IFNYHHIIVPMVQRVKNNKKSGSSVVWSICNDGNDWMWSERSPLNSGPMVQILDYPI
LIVYGTIGSEQQTNQRQQSAVYLSNVLMYQMRYSINVLEDTQFTNDLFTTYNVIFMGGPQ
TNKAVYSIQSVLPSPIGFHGSSDNMSFSLNDDSNMFSGPSVGLLFLSSCYSPEAIMKITP
KERYTQARQGCMLTVIEGTDTIGFQNSLFNFPTKSSFPMPDFMILGPNFGYQGVSGANAL
DLG**latidlsyklqf*
Translated Amino Acid sequence (All Frames) 
Frame A:
ivtnk**ncyyiyfhyllf*ypkt*livkiii*qngiy*hhfqvhqekmlmy*ivmveli
iyq*viiqhilvn*lmeqeldgiiiqqmlmvwli*ifqim*igi**iigqdqvahilvvg
efqhfh*ilvkpf*lhvqvlqsfg*iqq*ckvihmdwdynlixfnyqvvhin*klesldq
rqqvinvks*qpkrsnqfs*smkirlyq---

---yiqlpshyctdgtkg*k**kewfkcslvnl**w**ldve*kitikfwsngtnirlsn
fnclwynwk*ttnqststicslfikcfnvsneifnkcfrgysihk*lihnl*cniygrpt
nk*ssllnsisftitnwfpwfk**yvilfk**fkyvfrsfcwfivfiimlftrghyenyt
krtlyss*trlyaysy*gy*yywfpk*sfqfpn*iifpnarfhdirskfwlsrcigc*cs
gfgiiignyrpfl*tsil

Frame B:
*lqinneiviiftfiiyyfnipkps*l*kllfnrmgyistiskctkrrc*cikllwwn**
ytnr**fniy**is*wskswmeslynkc*wyg*fkffk*cklgfnk*lgrikwhif*wlg
nfnifiey**nhfsymfryckvldrfnsdar*fiwigiti*fxsiikwytsiks*nhwir
gsklsm*nhnnqrgainfhsl*kydctr---

---IFNYHHIIVPMVQRVKNNKKSGSSVVWSICNDGNDWMWSERSPLNSGPMVQILDYPI
LIVYGTIGSEQQTNQRQQSAVYLSNVLMYQMRYSINVLEDTQFTNDLFTTYNVIFMGGPQ
TNKAVYSIQSVLPSPIGFHGSSDNMSFSLNDDSNMFSGPSVGLLFLSSCYSPEAIMKITP
KERYTQARQGCMLTVIEGTDTIGFQNSLFNFPTKSSFPMPDFMILGPNFGYQGVSGANAL
DLG**latidlsyklqf*

Frame C:
syk*IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNCYGGIDN
IPIGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGTYFSGWG
ISTFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSVQLSSGTHQLKVRIIGSE
AASYQCEIITTKEEQSIFIVYENTIVP---

---ysttitllyrwykglkiikrvvqv*fgqfvmmvmigcgvkdhh*ilvqwyky*iiqf
*lfmvqlevnnkpinvnnlqfiyqmf*cik*diq*mf*rilnsqmtysqlim*ylweahk
qikqftqfnqfyhhqlvsmvqviichsl*mmiqicfqvlllvycfyhhvihqrpl*klhq
knvilkldkvvclqllrvlillvskivfsisqlnhlsqcqis*y*vqilvikvyrvlmlw
iwdnnwqlstflinfnfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI417 (VHI417Q) /CSM/VH/VHI4-A/VHI417Q.Seq.d/                       2714   0.0
VHK206 (VHK206Q) /CSM/VH/VHK2-A/VHK206Q.Seq.d/                       1489   0.0
VHH656 (VHH656Q) /CSM/VH/VHH6-C/VHH656Q.Seq.d/                       1489   0.0
VHN618 (VHN618Q) /CSM/VH/VHN6-A/VHN618Q.Seq.d/                       1483   0.0
CHI509 (CHI509Q) /CSM/CH/CHI5-A/CHI509Q.Seq.d/                       1483   0.0
VHE145 (VHE145Q) /CSM/VH/VHE1-B/VHE145Q.Seq.d/                       1477   0.0
VHK792 (VHK792Q) /CSM/VH/VHK7-D/VHK792Q.Seq.d/                       1475   0.0
CHM272 (CHM272Q) /CSM/CH/CHM2-C/CHM272Q.Seq.d/                       1475   0.0
CHL837 (CHL837Q) /CSM/CH/CHL8-B/CHL837Q.Seq.d/                       1475   0.0
VHH556 (VHH556Q) /CSM/VH/VHH5-C/VHH556Q.Seq.d/                       1469   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441536) Dictyostelium discoideum cDNA clone:ddv47b06, 3' ...  1520   0.0    1
(BJ444520) Dictyostelium discoideum cDNA clone:ddv56k17, 3' ...  1429   0.0    1
(BJ446242) Dictyostelium discoideum cDNA clone:ddv62i03, 3' ...  1409   0.0    4
(BJ382977) Dictyostelium discoideum cDNA clone:ddc46p08, 3' ...  1409   0.0    4
(BJ383629) Dictyostelium discoideum cDNA clone:ddc53n17, 3' ...  1398   0.0    2
(BJ383280) Dictyostelium discoideum cDNA clone:ddc52p09, 3' ...  1394   0.0    2
(BJ443414) Dictyostelium discoideum cDNA clone:ddv52h23, 3' ...  1360   0.0    4
(BJ442843) Dictyostelium discoideum cDNA clone:ddv51k02, 3' ...  1360   0.0    3
(BJ441435) Dictyostelium discoideum cDNA clone:ddv46o14, 3' ...  1360   0.0    3
(BJ436766) Dictyostelium discoideum cDNA clone:ddv32m03, 3' ...  1360   0.0    2
dna update 2008.11.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE008691_1920(AE008691|pid:none) Thermoanaerobacter tengcongensi...    44   0.007
CP000267_695(CP000267|pid:none) Rhodoferax ferrireducens T118, c...    39   0.46
AC116957_137(AC116957|pid:none) Dictyostelium discoideum chromos...    39   0.60
AE017341_213(AE017341|pid:none) Cryptococcus neoformans var. neo...    37   1.3
AB1151(AB1151) internalin proteins, probable peptidoglycan bound...    37   2.3
CP001025_1096(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   5.0
CP000151_1147(CP000151|pid:none) Burkholderia sp. 383 chromosome...    35   5.0
AE017341_214(AE017341|pid:none) Cryptococcus neoformans var. neo...    35   6.6
CP000269_2198(CP000269|pid:none) Janthinobacterium sp. Marseille...    35   8.6
protein update 2009. 7.13
PSORT 

 psg: 0.98  gvh: 0.73  alm: 0.39  top: 0.20  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VHI417 is exc
5' end seq. ID VHI417F
5' end seq. 
>VHI417F.Seq
ATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAA
TATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCAC
CATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATA
ATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTG
GATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATG
TAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGG
GAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTG
CAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAAT
TTAATTCNGTTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAG
AGGCAGCAAGTTATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAATTTTCATAG
TCTATGAAAATACGATTGTACCAGANNNNNNNNNN
Length of 5' end seq. 635
3' end seq. ID VHI417Z
3' end seq. 
>VHI417Z.Seq
NNNNNNNNNNTATATTCAACTACCATCACATTATTGTACCGATGGTACAAAGGGTTAAAA
ATAATAAAAAGAGTGGTTCAAGTGTAGTTTGGTCAATTTGTAATGATGGTAATGATTGGA
TGTGGAGTGAAAGATCACCATTAAATTCTGGTCCAATGGTACAAATATTAGATTATCCAA
TTTTAATTGTTTATGGTACAATTGGAAGTGAACAACAAACCAATCAACGTCAACAATCTG
CAGTTTATTTATCAAATGTTTTAATGTATCAAATGAGATATTCAATAAATGTTTTAGAGG
ATACTCAATTCACAAATGACTTATTCACAACTTATAATGTAATATTTATGGGAGGCCCAC
AAACAAATAAAGCAGTTTACTCAATTCAATCAGTTTTACCATCACCAATTGGTTTCCATG
GTTCAAGTGATAATATGTCATTCTCTTTAAATGATGATTCAAATATGTTTTCAGGTCCTT
CTGTTGGTTTATTGTTTTTATCATCATGTTATTCACCAGAGGCCATTATGAAAATTACAC
CAAAAGAACGTTATACTCAAGCTAGACAAGGTTGTATGCTTACAGTTATTGAGGGTACTG
ATACTATTGGTTTCCAAAATAGTCTTTTCAATTTCCCAACTAAATCATCTTTCCCAATGC
CAGATTTCATGATATTAGGTCCAAATTTTGGTTATCAAGGTGTATCGGGTGCTAATGCTC
TGGATTTGGGATAATAATTGGCAACTATCGACCTTTCTTATAAACTTCAATTTTAAA
Length of 3' end seq. 777
Connected seq. ID VHI417P
Connected seq. 
>VHI417P.Seq
ATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAA
TATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCAC
CATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATA
ATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTG
GATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATG
TAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGG
GAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTG
CAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAAT
TTAATTCNGTTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAG
AGGCAGCAAGTTATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAATTTTCATAG
TCTATGAAAATACGATTGTACCAGA----------TATATTCAACTACCATCACATTATT
GTACCGATGGTACAAAGGGTTAAAAATAATAAAAAGAGTGGTTCAAGTGTAGTTTGGTCA
ATTTGTAATGATGGTAATGATTGGATGTGGAGTGAAAGATCACCATTAAATTCTGGTCCA
ATGGTACAAATATTAGATTATCCAATTTTAATTGTTTATGGTACAATTGGAAGTGAACAA
CAAACCAATCAACGTCAACAATCTGCAGTTTATTTATCAAATGTTTTAATGTATCAAATG
AGATATTCAATAAATGTTTTAGAGGATACTCAATTCACAAATGACTTATTCACAACTTAT
AATGTAATATTTATGGGAGGCCCACAAACAAATAAAGCAGTTTACTCAATTCAATCAGTT
TTACCATCACCAATTGGTTTCCATGGTTCAAGTGATAATATGTCATTCTCTTTAAATGAT
GATTCAAATATGTTTTCAGGTCCTTCTGTTGGTTTATTGTTTTTATCATCATGTTATTCA
CCAGAGGCCATTATGAAAATTACACCAAAAGAACGTTATACTCAAGCTAGACAAGGTTGT
ATGCTTACAGTTATTGAGGGTACTGATACTATTGGTTTCCAAAATAGTCTTTTCAATTTC
CCAACTAAATCATCTTTCCCAATGCCAGATTTCATGATATTAGGTCCAAATTTTGGTTAT
CAAGGTGTATCGGGTGCTAATGCTCTGGATTTGGGATAATAATTGGCAACTATCGACCTT
TCTTATAAACTTCAATTTTAAA
Length of connected seq. 1392
Full length Seq ID -
Full length Seq. -
Length of full length seq. -