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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI404
Library VH
(Link to library)
Clone ID VHI404
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHI404 (VHI404Q) /CSM/VH/VHI4-A/VHI404Q.Seq.d/
CTGTTGGCCTACTGGAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTGTGAT
CATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACCAAGT
AAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGTTGAC
ATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACATTGAA
ATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACCAGAA
GAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCTCTCC
ATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATATGTT
GTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCGTCGT
GCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATCACTATT
TCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAATGAT
GGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
LLAYWNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSGKVD
ITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENTILS
IDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIKITI
SSHLTALSNMDTTSVIENND---
Translated Amino Acid sequence (All Frames) 
Frame A:
LLAYWNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSGKVD
ITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENTILS
IDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIKITI
SSHLTALSNMDTTSVIENND---


Frame B:
cwptgilyi*iii*lkkcviini*ltk*id*yyqiisyqvntiyildqi*rilysaaklt
lqsillnqpkkslsiqltlkfnq*rs*inkllplptmnqkklqf*nskmnyqlqkiqfsp
lislvf*mtn*kvsivqnmlsmvkivilvplnskplmlvvlshvlmnll*nlslilkslf
hli*llfqiwiqll*lkimm---


Frame C:
vgllefytyk**ys*knv*s*tfs*qsr*isitr*yrtk*irfts*tkfkgfciqrqs*h
ynqyc*tnqknhypfn*h*nsiskdlkstsyfryll*trrscnfripr*itsyrkynslh
*fhwyfk*qikrflsfkiccqw*rslywyhsirsh*csscfpmf**tcfkifl*y*nhyf
isfncsfkygynfcn*k**---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI404 (VHI404Q) /CSM/VH/VHI4-A/VHI404Q.Seq.d/                       1152   0.0
VHI657 (VHI657Q) /CSM/VH/VHI6-C/VHI657Q.Seq.d/                       1146   0.0
AHO105 (AHO105Q) /CSM/AH/AHO1-A/AHO105Q.Seq.d/                       1146   0.0
VHM206 (VHM206Q) /CSM/VH/VHM2-A/VHM206Q.Seq.d/                       1126   0.0
AHM512 (AHM512Q) /CSM/AH/AHM5-A/AHM512Q.Seq.d/                       1126   0.0
VHB343 (VHB343Q) /CSM/VH/VHB3-B/VHB343Q.Seq.d/                       1124   0.0
AFI456 (AFI456Q) /CSM/AF/AFI4-C/AFI456Q.Seq.d/                       1124   0.0
VHQ478 (VHQ478Q) /CSM/VH/VHQ4-D/VHQ478Q.Seq.d/                       1122   0.0
VHQ457 (VHQ457Q) /CSM/VH/VHQ4-C/VHQ457Q.Seq.d/                       1122   0.0
VHQ308 (VHQ308Q) /CSM/VH/VHQ3-A/VHQ308Q.Seq.d/                       1122   0.0
own update 2002.12.31
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427876) Dictyostelium discoideum cDNA clone:ddv63l20, 5' ...   765   0.0    2
(BJ427816) Dictyostelium discoideum cDNA clone:ddv63o15, 5' ...   765   0.0    2
(BJ427755) Dictyostelium discoideum cDNA clone:ddv63b16, 5' ...   765   0.0    2
(BJ427672) Dictyostelium discoideum cDNA clone:ddv63p01, 5' ...   765   0.0    2
(BJ427508) Dictyostelium discoideum cDNA clone:ddv62l13, 5' ...   765   0.0    2
(BJ427386) Dictyostelium discoideum cDNA clone:ddv62c10, 5' ...   765   0.0    2
(BJ427377) Dictyostelium discoideum cDNA clone:ddv62a11, 5' ...   765   0.0    2
(BJ427371) Dictyostelium discoideum cDNA clone:ddv62p02, 5' ...   765   0.0    2
(BJ427354) Dictyostelium discoideum cDNA clone:ddv62k06, 5' ...   765   0.0    2
(BJ427250) Dictyostelium discoideum cDNA clone:ddv61f19, 5' ...   765   0.0    2
dna update 2008.11.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...   148   1e-34
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...   148   1e-34
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...   148   1e-34
AM270075_67(AM270075|pid:none) Aspergillus niger contig An04c014...   132   6e-30
AP007157_574(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   130   4e-29
EF678434_1(EF678434|pid:none) Picea sitchensis clone WS02921_A14...   129   7e-29
EF676179_1(EF676179|pid:none) Picea sitchensis clone WS02717_G19...   128   1e-28
AP005572_11(AP005572|pid:none) Oryza sativa Japonica Group genom...   127   2e-28
AM920433_347(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   126   4e-28
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene...   125   1e-27
protein update 2009. 7.13
PSORT 

 psg: 0.86  gvh: 0.34  alm: 0.45  top: 0.57  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for VHI404 is cyt
5' end seq. ID VHI404F
5' end seq. 
>VHI404F.Seq
CTGTTGGCCTACTGGAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTGTGAT
CATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACCAAGT
AAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGTTGAC
ATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACATTGAA
ATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACCAGAA
GAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCTCTCC
ATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATATGTT
GTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCGTCGT
GCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATCACTATT
TCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAATGAT
GGNNNNNNNNNN
Length of 5' end seq. 612
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -