VHI383
Library VH
(Link to library)
Clone ID VHI383
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16423-1
Original site URL
Representative seq. ID VHI383P
(Link to Original site)
Representative DNA sequence
>VHI383 (VHI383Q) /CSM/VH/VHI3-D/VHI383Q.Seq.d/
AATTTTCATCCACGCGGATAAATTTTTTTAAAGAATTAGTCATTTTATGCCAATTGGAAA
TAACAAAGATAACGATGGAACTACCCTGAATATCTCAGGGTTAACCATCTCTGATAAGAG
TTCGTCAACTTCATCAAACAACAACACAACAACAACAACAACACAAACTAGTGAACCATA
TGTCCCACCATCTCGTAGAAACAAGATGAATAATAGTTCAGGTTCATCAAGAGACGATTA
TCCATCACCATCTGACCGTGATAATCGTGATTCACCATTCAATCGTGACCGTCGTGACGA
TGGTTACAGAGGTGGTAACAATTTTAGGGAAAATAACTCTAATAACAACAACAACAGTAG
AGATAACTACAAAAGTCCATCATTCTCAAGAAACAATAATAGTAATGGTGGTGGTAGTAG
TAGTGGTAGCGGTGGTTGGGATAATGGTCCAAGAGAACAAGGCCCACCAAGAGGTAATAG
TTACTCTTATTCACCAAATAATTCATTCTCTCGTGGTGGTAATCAAGGTGGTTATGGTAA
TAGAGGCGGAAGTGGCAGTAGTTTTGGTAAACCAGCCAATAAAAATGATCGTTACTACGA
TAGATGGTCAAACTTTAGXXXXXXXXXXCTCATTTTCGTTGAAACTAAACGTTCTTGTGA
TACTCTTACCTACTTTTTAAATCAAAGAAATTTCCCAACTACCTGTATTCATGGTGATTT
AACTCAACCAGAAAGAGAAAATGCACTTCAATCTTTCCGTTCTTTTGCAACTCCATTCTT
AGTAGCAACTGATATTGCATCAAGAGGTCTCCACATCGGTAATGTTAATTTGGTTATCAA
TTTCGACTTGCCTACCGACATACATATCTACGTTCATCGTATTGGTAGAACCGGAAGAGC
AGGAAAAAAAGGTTTAGCAATTTCCTTCTTCAATGAAAAGAATAAACCAGTTGGTGCTGA
ACTTTTGAAATTAATGAAAGCTTCAAATCAAGATATTCCAGATTGGTTTGAAAAGATGGT
ACACAATCTCCGTATGTCTAAAGGTCCATCAAACTCAAAATCAAATAGTCCATTCAACAA
ATCTTACAATAGTCATCACAATAGAGATGATAACCGTGGTGGTTATGGTGGTGGTGGTGG
TGGTAATGGAGGTTACAGTAACAACCGTAATGATAGAAGAGAAGATAAATCAGATTACTC
AATGCATCACCCATACTTTAGCAACAATGGTGGTTCATATAATTAAACATTCACCTCATG
TCATTCGTTTAATAAAAAATAATAAATCCATTTTAATTCAATATNAATTAAAATC
sequence update 2002.10.25
Translated Amino Acid sequence
ifihadkff*RISHFMPIGNNKDNDGTTLNISGLTISDKSSSTSSNNNTTTTTTQTSEPY
VPPSRRNKMNNSSGSSRDDYPSPSDRDNRDSPFNRDRRDDGYRGGNNFRENNSNNNNNSR
DNYKSPSFSRNNNSNGGGSSSGSGGWDNGPREQGPPRGNSYSYSPNNSFSRGGNQGGYGN
RGGSGSSFGKPANKNDRYYDRWSNF---

---LIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIA
SRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMK
ASNQDIPDWFEKMVHNLRMSKGPSNSKSNSPFNKSYNSHHNRDDNRGGYGGGGGGNGGYS
NNRNDRREDKSDYSMHHPYFSNNGGSYN*tftschsfnkk**ihfnsixiki


Translated Amino Acid sequence (All Frames)
Frame A:
nfhprg*iflkn*sfyanwk*qr*rwnypeylrvnhl**efvnfikqqhnnnnntn**ti
cptis*kqde**frfikrrlsiti*p**s*ftiqs*ps*rwlqrw*qf*gk*l**qqqq*
r*lqksiilkkq***www***w*rwlg*wskrtrptkr**lllftk*filsww*srwlw*
*rrkwq*fw*tsq*k*sllr*mvkl*---

---LIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIA
SRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMK
ASNQDIPDWFEKMVHNLRMSKGPSNSKSNSPFNKSYNSHHNRDDNRGGYGGGGGGNGGYS
NNRNDRREDKSDYSMHHPYFSNNGGSYN*tftschsfnkk**ihfnsixiki

Frame B:
ifihadkff*RISHFMPIGNNKDNDGTTLNISGLTISDKSSSTSSNNNTTTTTTQTSEPY
VPPSRRNKMNNSSGSSRDDYPSPSDRDNRDSPFNRDRRDDGYRGGNNFRENNSNNNNNSR
DNYKSPSFSRNNNSNGGGSSSGSGGWDNGPREQGPPRGNSYSYSPNNSFSRGGNQGGYGN
RGGSGSSFGKPANKNDRYYDRWSNF---

---sfslklnvlvillptf*ikeisqlpvfmvi*lnqkekmhfnlsvllqlhs**qlilh
qevstsvmliwlsistclptyistfivlvepeeqekkv*qfpssmkrinqlvlnf*n**k
lqikifqiglkrwytisvclkvhqtqnqivhstnltivitiemitvvvmvvvvvvmevtv
ttvmieekinqitqcithtlatmvvhiikhsphvirliknnksiliqyxlk

Frame C:
fsstrinffkelvilcqleitkitmelp*isqg*pslirvrqlhqtttqqqqqhklvnhm
shhlvetr*iivqvhqetiihhhltviivihhsivtvvtmvtevvtilgkitlittttve
ittkvhhsqetiivmvvvvvvvavvgimvqenkahqevivtlihqiihslvvvikvvmvi
eaevavvlvnqpikmivttidgqtl---

---hfr*n*tfl*ysyllfkskkfpnylysw*fnstrkrkctsifpffcnsilssn*yci
krsphr*c*fgyqfrlayrhtylrssyw*nrksrkkrfsnfllq*ke*tswc*tfeines
fksrysrlv*kdgtqspyv*rsiklkik*siqqilq*ssq*r**pwwlwwwwww*wrlq*
qp***krr*irllnaspil*qqwwfi*lnihlmsfv**kiinpf*fnxn*n

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI383 (VHI383Q) /CSM/VH/VHI3-D/VHI383Q.Seq.d/ 1776 0.0
VHL166 (VHL166Q) /CSM/VH/VHL1-C/VHL166Q.Seq.d/ 1770 0.0
VHQ404 (VHQ404Q) /CSM/VH/VHQ4-A/VHQ404Q.Seq.d/ 924 0.0
VHP734 (VHP734Q) /CSM/VH/VHP7-B/VHP734Q.Seq.d/ 924 0.0
VHP681 (VHP681Q) /CSM/VH/VHP6-D/VHP681Q.Seq.d/ 924 0.0
VHP588 (VHP588Q) /CSM/VH/VHP5-D/VHP588Q.Seq.d/ 924 0.0
VHP118 (VHP118Q) /CSM/VH/VHP1-A/VHP118Q.Seq.d/ 924 0.0
VHO596 (VHO596Q) /CSM/VH/VHO5-D/VHO596Q.Seq.d/ 924 0.0
VHM740 (VHM740Q) /CSM/VH/VHM7-B/VHM740Q.Seq.d/ 924 0.0
VHJ602 (VHJ602Q) /CSM/VH/VHJ6-A/VHJ602Q.Seq.d/ 924 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU061454) Dictyostelium discoideum slug cDNA, clone SLE316. 890 0.0 2
(BJ425043) Dictyostelium discoideum cDNA clone:ddv54n10, 5' ... 890 0.0 3
(BJ424768) Dictyostelium discoideum cDNA clone:ddv53c17, 5' ... 890 0.0 3
(BJ423112) Dictyostelium discoideum cDNA clone:ddv48i02, 5' ... 890 0.0 3
(BJ423020) Dictyostelium discoideum cDNA clone:ddv47f21, 5' ... 890 0.0 3
(BJ422647) Dictyostelium discoideum cDNA clone:ddv46i15, 5' ... 890 0.0 3
(BJ422317) Dictyostelium discoideum cDNA clone:ddv45e15, 5' ... 890 0.0 3
(BJ420106) Dictyostelium discoideum cDNA clone:ddv38b12, 5' ... 890 0.0 3
(BJ419348) Dictyostelium discoideum cDNA clone:ddv35g21, 5' ... 890 0.0 3
(BJ396530) Dictyostelium discoideum cDNA clone:dds43b05, 5' ... 890 0.0 2
dna update 2008.11.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QS3) RecName: Full=Probable ATP-dependent RNA helicase ddx3;... 315 2e-84
(Q6Z4K6) RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; ... 161 4e-38
BT085991_1(BT085991|pid:none) Zea mays full-length cDNA clone ZM... 157 6e-37
(Q75HJ0) RecName: Full=DEAD-box ATP-dependent RNA helicase 37; ... 157 8e-37
FN357514_12(FN357514|pid:none) Schistosoma mansoni genome sequen... 157 8e-37
EU953399_1(EU953399|pid:none) Zea mays clone 1406878 unknown mRNA. 157 1e-36
(Q2R1M8) RecName: Full=DEAD-box ATP-dependent RNA helicase 52C; ... 155 4e-36
AY062446_1(AY062446|pid:none) Arabidopsis thaliana ATP-dependent... 154 5e-36
AM048814_1(AM048814|pid:none) Platynereis dumerilii mRNA for PL1... 154 7e-36
AM444101_1(AM444101|pid:none) Vitis vinifera contig VV78X103110.... 154 9e-36
protein update 2009. 7.13
PSORT

psg: 0.88 gvh: 0.39 alm: 0.46 top: 0.30 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.11 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VHI383 is cyt

5' end seq. ID VHI383F
5' end seq.
>VHI383F.Seq
AATTTTCATCCACGCGGATAAATTTTTTTAAAGAATTAGTCATTTTATGCCAATTGGAAA
TAACAAAGATAACGATGGAACTACCCTGAATATCTCAGGGTTAACCATCTCTGATAAGAG
TTCGTCAACTTCATCAAACAACAACACAACAACAACAACAACACAAACTAGTGAACCATA
TGTCCCACCATCTCGTAGAAACAAGATGAATAATAGTTCAGGTTCATCAAGAGACGATTA
TCCATCACCATCTGACCGTGATAATCGTGATTCACCATTCAATCGTGACCGTCGTGACGA
TGGTTACAGAGGTGGTAACAATTTTAGGGAAAATAACTCTAATAACAACAACAACAGTAG
AGATAACTACAAAAGTCCATCATTCTCAAGAAACAATAATAGTAATGGTGGTGGTAGTAG
TAGTGGTAGCGGTGGTTGGGATAATGGTCCAAGAGAACAAGGCCCACCAAGAGGTAATAG
TTACTCTTATTCACCAAATAATTCATTCTCTCGTGGTGGTAATCAAGGTGGTTATGGTAA
TAGAGGCGGAAGTGGCAGTAGTTTTGGTAAACCAGCCAATAAAAATGATCGTTACTACGA
TAGATGGTCAAACTTTAGNNNNNNNNNN
Length of 5' end seq. 628
3' end seq. ID VHI383Z
3' end seq.
>VHI383Z.Seq
NNNNNNNNNNCTCATTTTCGTTGAAACTAAACGTTCTTGTGATACTCTTACCTACTTTTT
AAATCAAAGAAATTTCCCAACTACCTGTATTCATGGTGATTTAACTCAACCAGAAAGAGA
AAATGCACTTCAATCTTTCCGTTCTTTTGCAACTCCATTCTTAGTAGCAACTGATATTGC
ATCAAGAGGTCTCCACATCGGTAATGTTAATTTGGTTATCAATTTCGACTTGCCTACCGA
CATACATATCTACGTTCATCGTATTGGTAGAACCGGAAGAGCAGGAAAAAAAGGTTTAGC
AATTTCCTTCTTCAATGAAAAGAATAAACCAGTTGGTGCTGAACTTTTGAAATTAATGAA
AGCTTCAAATCAAGATATTCCAGATTGGTTTGAAAAGATGGTACACAATCTCCGTATGTC
TAAAGGTCCATCAAACTCAAAATCAAATAGTCCATTCAACAAATCTTACAATAGTCATCA
CAATAGAGATGATAACCGTGGTGGTTATGGTGGTGGTGGTGGTGGTAATGGAGGTTACAG
TAACAACCGTAATGATAGAAGAGAAGATAAATCAGATTACTCAATGCATCACCCATACTT
TAGCAACAATGGTGGTTCATATAATTAAACATTCACCTCATGTCATTCGTTTAATAAAAA
ATAATAAATCCATTTTAATTCAATATNAATTAAAATC
Length of 3' end seq. 697
Connected seq. ID VHI383P
Connected seq.
>VHI383P.Seq
AATTTTCATCCACGCGGATAAATTTTTTTAAAGAATTAGTCATTTTATGCCAATTGGAAA
TAACAAAGATAACGATGGAACTACCCTGAATATCTCAGGGTTAACCATCTCTGATAAGAG
TTCGTCAACTTCATCAAACAACAACACAACAACAACAACAACACAAACTAGTGAACCATA
TGTCCCACCATCTCGTAGAAACAAGATGAATAATAGTTCAGGTTCATCAAGAGACGATTA
TCCATCACCATCTGACCGTGATAATCGTGATTCACCATTCAATCGTGACCGTCGTGACGA
TGGTTACAGAGGTGGTAACAATTTTAGGGAAAATAACTCTAATAACAACAACAACAGTAG
AGATAACTACAAAAGTCCATCATTCTCAAGAAACAATAATAGTAATGGTGGTGGTAGTAG
TAGTGGTAGCGGTGGTTGGGATAATGGTCCAAGAGAACAAGGCCCACCAAGAGGTAATAG
TTACTCTTATTCACCAAATAATTCATTCTCTCGTGGTGGTAATCAAGGTGGTTATGGTAA
TAGAGGCGGAAGTGGCAGTAGTTTTGGTAAACCAGCCAATAAAAATGATCGTTACTACGA
TAGATGGTCAAACTTTAG----------CTCATTTTCGTTGAAACTAAACGTTCTTGTGA
TACTCTTACCTACTTTTTAAATCAAAGAAATTTCCCAACTACCTGTATTCATGGTGATTT
AACTCAACCAGAAAGAGAAAATGCACTTCAATCTTTCCGTTCTTTTGCAACTCCATTCTT
AGTAGCAACTGATATTGCATCAAGAGGTCTCCACATCGGTAATGTTAATTTGGTTATCAA
TTTCGACTTGCCTACCGACATACATATCTACGTTCATCGTATTGGTAGAACCGGAAGAGC
AGGAAAAAAAGGTTTAGCAATTTCCTTCTTCAATGAAAAGAATAAACCAGTTGGTGCTGA
ACTTTTGAAATTAATGAAAGCTTCAAATCAAGATATTCCAGATTGGTTTGAAAAGATGGT
ACACAATCTCCGTATGTCTAAAGGTCCATCAAACTCAAAATCAAATAGTCCATTCAACAA
ATCTTACAATAGTCATCACAATAGAGATGATAACCGTGGTGGTTATGGTGGTGGTGGTGG
TGGTAATGGAGGTTACAGTAACAACCGTAATGATAGAAGAGAAGATAAATCAGATTACTC
AATGCATCACCCATACTTTAGCAACAATGGTGGTTCATATAATTAAACATTCACCTCATG
TCATTCGTTTAATAAAAAATAATAAATCCATTTTAATTCAATATNAATTAAAATC
Length of connected seq. 1305
Full length Seq ID -
Full length Seq. -
Length of full length seq. -