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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI340
Library VH
(Link to library)
Clone ID VHI340
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11170-1
Original site URL
Representative seq. ID VHI340P
(Link to Original site)
Representative DNA sequence 
>VHI340 (VHI340Q) /CSM/VH/VHI3-B/VHI340Q.Seq.d/
TGGAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATTTA
TTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAAAA
AAAAAAXXXXXXXXXXAACAATTTAATGGTAATTCAAATGATNTATCATTTTTAGGTGGT
GGTGGTGGTGGTGGTGAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGAT
AGATCACAAGCAATTCAAATTAGTGGAGCATTTACATGATTCCAAGGTAGAATTAATTTA
GAATTAAATCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTAT
CAAAATAGTTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTA
GGCCAAAGCACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTG
AATCCAGTCATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAG
ATGAATTTCCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTAT
TTATCCATGTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGT
TTACCACATGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAA
ATCGTTAGAAAGAAAGCCCCANANCNA
sequence update 2002.10.25
Translated Amino Acid sequence 
wnthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---QFNGNSNDXSFLGGGGGGGEVQAPVNKVVVFGGDRSQAIQISGAFT*fqgrinleln
llntsqqgmskfkiqfyqnsfgispadqilscgaievgqstdvtipiscngqisnplnpv
idmammvlpsqerfyfkmnfpllclltetgrldresylsmwksipesnersveiqvrlph
vdvdsilrrlnsknifeivrkkapxx
Translated Amino Acid sequence (All Frames) 
Frame A:
wnthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---nnlmviqmxyhf*vvvvvvvkfkhqlikllylvvidhkqfklvehlhdskveli*n*
if*iqvnkvcqnsrfnfikivlvfhqliksyhvvllk*akalmsqfqshamvksqih*iq
sliwq*wyyqvkrdstlr*ishyfvy*qklvvsivnliypcgnqfqnqmnvqlkfkyvyh
m*mltlsfvv*ivrislkslerkpxx

Frame B:
gtrtyh*niniihqelifiyl*yffkritihy*svvlv*kk---

---ti*w*fk*xiifrwwwwww*sssts**scciww**itsnsn*wsiymipr*n*frik
sfeykstryvkiqdsilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiess
h*ygndgitksreill*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstftt
crc*lypssfk**eyl*nr*kespxx

Frame C:
ehahiikili*siknlylfiyniflrglqytikvly*ykkk---

---QFNGNSNDXSFLGGGGGGGEVQAPVNKVVVFGGDRSQAIQISGAFT*fqgrinleln
llntsqqgmskfkiqfyqnsfgispadqilscgaievgqstdvtipiscngqisnplnpv
idmammvlpsqerfyfkmnfpllclltetgrldresylsmwksipesnersveiqvrlph
vdvdsilrrlnsknifeivrkkapxx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI340 (VHI340Q) /CSM/VH/VHI3-B/VHI340Q.Seq.d/                       1080   0.0
VHM229 (VHM229Q) /CSM/VH/VHM2-B/VHM229Q.Seq.d/                       1065   0.0
VHC611 (VHC611Q) /CSM/VH/VHC6-A/VHC611Q.Seq.d/                       1065   0.0
VHB374 (VHB374Q) /CSM/VH/VHB3-D/VHB374Q.Seq.d/                       1065   0.0
VHA862 (VHA862Q) /CSM/VH/VHA8-C/VHA862Q.Seq.d/                       1065   0.0
SHF674 (SHF674Q) /CSM/SH/SHF6-D/SHF674Q.Seq.d/                       1065   0.0
SHF453 (SHF453Q) /CSM/SH/SHF4-C/SHF453Q.Seq.d/                       1065   0.0
SHD872 (SHD872Q) /CSM/SH/SHD8-C/SHD872Q.Seq.d/                       1065   0.0
SHD615 (SHD615Q) /CSM/SH/SHD6-A/SHD615Q.Seq.d/                       1065   0.0
SHD449 (SHD449Q) /CSM/SH/SHD4-C/SHD449Q.Seq.d/                       1065   0.0
own update 2003.10.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441672) Dictyostelium discoideum cDNA clone:ddv47p09, 3' ...  1080   0.0    2
(BJ444133) Dictyostelium discoideum cDNA clone:ddv55i08, 3' ...  1065   0.0    1
(BJ438001) Dictyostelium discoideum cDNA clone:ddv36e04, 3' ...  1065   0.0    2
(BJ437284) Dictyostelium discoideum cDNA clone:ddv33d19, 3' ...  1065   0.0    2
(BJ436927) Dictyostelium discoideum cDNA clone:ddv32l16, 3' ...  1065   0.0    2
(BJ406584) Dictyostelium discoideum cDNA clone:dds35c20, 3' ...  1065   0.0    2
(BJ406240) Dictyostelium discoideum cDNA clone:dds34j14, 3' ...  1065   0.0    1
(BJ405450) Dictyostelium discoideum cDNA clone:dds31p18, 3' ...  1065   0.0    2
(BJ405280) Dictyostelium discoideum cDNA clone:dds31m04, 3' ...  1065   0.0    2
(BJ405065) Dictyostelium discoideum cDNA clone:dds30b14, 3' ...  1065   0.0    1
dna update 2008.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X82) RecName: Full=AP-1 complex subunit beta; AltName: Full=...   377   e-103
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   105   2e-21
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1...   105   2e-21
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...   105   2e-21
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ...   105   2e-21
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   105   2e-21
BC012150_1(BC012150|pid:none) Homo sapiens, clone IMAGE:4558274,...   105   2e-21
AK304126_1(AK304126|pid:none) Homo sapiens cDNA FLJ55646 complet...   105   2e-21
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0...   105   2e-21
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF...   102   1e-20
protein update 2009. 7.13
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHI340 is nuc
5' end seq. ID VHI340F
5' end seq. 
>VHI340F.Seq
TGGAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATTTA
TTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAAAA
AAAAAANNNNNNNNNN
Length of 5' end seq. 136
3' end seq. ID VHI340Z
3' end seq. 
>VHI340Z.Seq
NNNNNNNNNNAACAATTTAATGGTAATTCAAATGATNTATCATTTTTAGGTGGTGGTGGT
GGTGGTGGTGAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCA
CAAGCAATTCAAATTAGTGGAGCATTTACATGATTCCAAGGTAGAATTAATTTAGAATTA
AATCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAAT
AGTTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAA
AGCACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCA
GTCATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAAT
TTCCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCC
ATGTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCA
CATGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTT
AGAAAGAAAGCCCCANANCNA
Length of 3' end seq. 621
Connected seq. ID VHI340P
Connected seq. 
>VHI340P.Seq
TGGAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATTTA
TTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAAAA
AAAAAA----------AACAATTTAATGGTAATTCAAATGATNTATCATTTTTAGGTGGT
GGTGGTGGTGGTGGTGAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGAT
AGATCACAAGCAATTCAAATTAGTGGAGCATTTACATGATTCCAAGGTAGAATTAATTTA
GAATTAAATCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTAT
CAAAATAGTTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTA
GGCCAAAGCACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTG
AATCCAGTCATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAG
ATGAATTTCCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTAT
TTATCCATGTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGT
TTACCACATGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAA
ATCGTTAGAAAGAAAGCCCCANANCNA
Length of connected seq. 737
Full length Seq ID -
Full length Seq. -
Length of full length seq. -