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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI326
Library VH
(Link to library)
Clone ID VHI326
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15033-1
Original site URL
Representative seq. ID VHI326P
(Link to Original site)
Representative DNA sequence 
>VHI326 (VHI326Q) /CSM/VH/VHI3-B/VHI326Q.Seq.d/
ACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAATATCCC
AAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCACCATTTC
CAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATAATATAC
CAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTGGATGGA
ATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATGTAAATT
GGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGGGAATTT
CAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTGCAAAGT
TTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAATTTAATT
CAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAGAGGCAG
CAAGTTATCAATGTGAAATCATAACAXXXXXXXXXXGTACAAATATTAGATTATCCAATT
TTAATTGTTTATGGTACAATTGGAAGTGAACAACAAACCAATCAACGTCAACAATCTGCA
GTTTATTTATCAACTGTTTTAATGTATCAAATGAGATATTCAATAAATGTTTTAGAGGAT
ACTCAATTCACAAATGACTTATTCACAACTTATAATGTAATATTTATGGGAGGCCCACAA
ACAAATAAAGCAGTTTACTCAATTCAATCAGTTTTACCATCACCAATTGGTTTCCATGGT
TCAAGTGATAATATGTCATTCTCTTTAAATGATGATTCAAATATGTTTTCAGGTCCTTCT
GTTGGTTTATTGTTTTTATCATCATGTTATTCACCAGAGGCCATTATGAAAATTACACCA
AAAGAACGTTATACTCAAGCTAGACAAGGTTGTATGCTTACAGTTATTGAGGGTACTGAT
ACTATTGGTTTCCAAAATAGTCTTTTCAATTTCCCAACTAAATCATCTTTCCCAATGCCA
GATTTCATGATATTAGGTCCAAATTTTGGTTATCAAGGTGTATCGGGTGCTAATGCTCTT
GGATTTTGGGATAATAATTGGCAACTATCGACCTTTCTTATATAACTTCAATTTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
k*IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNCYGGIDNIP
IGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGTYFSGWGIS
TFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSIQLSSGTHQLKVRIIGSEAA
SYQCEIIT---

---VQILDYPILIVYGTIGSEQQTNQRQQSAVYLSTVLMYQMRYSINVLEDTQFTNDLFT
TYNVIFMGGPQTNKAVYSIQSVLPSPIGFHGSSDNMSFSLNDDSNMFSGPSVGLLFLSSC
YSPEAIMKITPKERYTQARQGCMLTVIEGTDTIGFQNSLFNFPTKSSFPMPDFMILGPNF
GYQGVSGANALGFWDNNWQLSTFLI*lqf*
Translated Amino Acid sequence (All Frames) 
Frame A:
tnk**ncyyiyfhyllf*ypkt*livkiii*qngiy*hhfqvhqekmlmy*ivmveliiy
q*viiqhilvn*lmeqeldgiiiqqmlmvwli*ifqim*igi**iigqdqvahilvvgef
qhfh*ilvkpf*lhvqvlqsfg*iqq*ckvihmdwdynliqfnyqvvhin*klesldqrq
qvinvks*---

---VQILDYPILIVYGTIGSEQQTNQRQQSAVYLSTVLMYQMRYSINVLEDTQFTNDLFT
TYNVIFMGGPQTNKAVYSIQSVLPSPIGFHGSSDNMSFSLNDDSNMFSGPSVGLLFLSSC
YSPEAIMKITPKERYTQARQGCMLTVIEGTDTIGFQNSLFNFPTKSSFPMPDFMILGPNF
GYQGVSGANALGFWDNNWQLSTFLI*lqf*

Frame B:
qinneiviiftfiiyyfnipkps*l*kllfnrmgyistiskctkrrc*cikllwwn**yt
nr**fniy**is*wskswmeslynkc*wyg*fkffk*cklgfnk*lgrikwhif*wlgnf
nifiey**nhfsymfryckvldrfnsdar*fiwigiti*fnsiikwytsiks*nhwirgs
klsm*nhn---

---yky*iiqf*lfmvqlevnnkpinvnnlqfiyqlf*cik*diq*mf*rilnsqmtysq
lim*ylweahkqikqftqfnqfyhhqlvsmvqviichsl*mmiqicfqvlllvycfyhhv
ihqrpl*klhqknvilkldkvvclqllrvlillvskivfsisqlnhlsqcqis*y*vqil
vikvyrvlmlldfgiiignyrpflynfnfk

Frame C:
k*IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNCYGGIDNIP
IGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGTYFSGWGIS
TFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSIQLSSGTHQLKVRIIGSEAA
SYQCEIIT---

---tnirlsnfnclwynwk*ttnqststicslfincfnvsneifnkcfrgysihk*lihn
l*cniygrptnk*ssllnsisftitnwfpwfk**yvilfk**fkyvfrsfcwfivfiiml
ftrghyenytkrtlyss*trlyaysy*gy*yywfpk*sfqfpn*iifpnarfhdirskfw
lsrcigc*cswilg**latidlsyitsil
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI326 (VHI326Q) /CSM/VH/VHI3-B/VHI326Q.Seq.d/                       2315   0.0
CHR594 (CHR594Q) /CSM/CH/CHR5-D/CHR594Q.Seq.d/                       1225   0.0
CHM737 (CHM737Q) /CSM/CH/CHM7-B/CHM737Q.Seq.d/                       1225   0.0
CHI245 (CHI245Q) /CSM/CH/CHI2-B/CHI245Q.Seq.d/                       1225   0.0
VHP513 (VHP513Q) /CSM/VH/VHP5-A/VHP513Q.Seq.d/                       1209   0.0
VHE145 (VHE145Q) /CSM/VH/VHE1-B/VHE145Q.Seq.d/                       1209   0.0
VHC878 (VHC878Q) /CSM/VH/VHC8-D/VHC878Q.Seq.d/                       1209   0.0
VHC360 (VHC360Q) /CSM/VH/VHC3-C/VHC360Q.Seq.d/                       1209   0.0
VHB803 (VHB803Q) /CSM/VH/VHB8-A/VHB803Q.Seq.d/                       1209   0.0
CHR566 (CHR566Q) /CSM/CH/CHR5-C/CHR566Q.Seq.d/                       1209   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441613) Dictyostelium discoideum cDNA clone:ddv47d07, 3' ...  1231   0.0    1
(BJ386337) Dictyostelium discoideum cDNA clone:ddc57k23, 3' ...  1223   0.0    1
(BJ383828) Dictyostelium discoideum cDNA clone:ddc47j09, 3' ...  1223   0.0    1
(BJ380497) Dictyostelium discoideum cDNA clone:ddc38i12, 3' ...  1223   0.0    1
(BJ439075) Dictyostelium discoideum cDNA clone:ddv39i11, 3' ...  1191   0.0    2
(BJ372378) Dictyostelium discoideum cDNA clone:ddc12j09, 3' ...  1191   0.0    2
(BJ441434) Dictyostelium discoideum cDNA clone:ddv46o13, 3' ...  1183   0.0    2
(C84053) Dictyostelium discoideum slug cDNA, clone SSC559.       1166   0.0    2
(BJ383629) Dictyostelium discoideum cDNA clone:ddc53n17, 3' ...  1148   0.0    1
(BJ446242) Dictyostelium discoideum cDNA clone:ddv62i03, 3' ...  1144   0.0    2
dna update 2008.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017341_214(AE017341|pid:none) Cryptococcus neoformans var. neo...    49   4e-04
AE008691_1920(AE008691|pid:none) Thermoanaerobacter tengcongensi...    41   0.096
AC116957_137(AC116957|pid:none) Dictyostelium discoideum chromos...    39   0.48
CP000267_695(CP000267|pid:none) Rhodoferax ferrireducens T118, c...    38   0.82
AE017341_213(AE017341|pid:none) Cryptococcus neoformans var. neo...    37   1.1
CP001025_1096(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   4.0
CP000151_1147(CP000151|pid:none) Burkholderia sp. 383 chromosome...    35   4.0
CP000269_2198(CP000269|pid:none) Janthinobacterium sp. Marseille...    35   5.3
AL844509_38(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    34   9.0
CP000614_1118(CP000614|pid:none) Burkholderia vietnamiensis G4 c...    34   9.0
protein update 2009. 7.13
PSORT 

 psg: 0.98  gvh: 0.73  alm: 0.37  top: 0.20  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VHI326 is exc
5' end seq. ID VHI326F
5' end seq. 
>VHI326F.Seq
ACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAATATCCC
AAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCACCATTTC
CAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATAATATAC
CAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTGGATGGA
ATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATGTAAATT
GGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGGGAATTT
CAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTGCAAAGT
TTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAATTTAATT
CAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAGAGGCAG
CAAGTTATCAATGTGAAATCATAACANNNNNNNNNN
Length of 5' end seq. 576
3' end seq. ID VHI326Z
3' end seq. 
>VHI326Z.Seq
NNNNNNNNNNGTACAAATATTAGATTATCCAATTTTAATTGTTTATGGTACAATTGGAAG
TGAACAACAAACCAATCAACGTCAACAATCTGCAGTTTATTTATCAACTGTTTTAATGTA
TCAAATGAGATATTCAATAAATGTTTTAGAGGATACTCAATTCACAAATGACTTATTCAC
AACTTATAATGTAATATTTATGGGAGGCCCACAAACAAATAAAGCAGTTTACTCAATTCA
ATCAGTTTTACCATCACCAATTGGTTTCCATGGTTCAAGTGATAATATGTCATTCTCTTT
AAATGATGATTCAAATATGTTTTCAGGTCCTTCTGTTGGTTTATTGTTTTTATCATCATG
TTATTCACCAGAGGCCATTATGAAAATTACACCAAAAGAACGTTATACTCAAGCTAGACA
AGGTTGTATGCTTACAGTTATTGAGGGTACTGATACTATTGGTTTCCAAAATAGTCTTTT
CAATTTCCCAACTAAATCATCTTTCCCAATGCCAGATTTCATGATATTAGGTCCAAATTT
TGGTTATCAAGGTGTATCGGGTGCTAATGCTCTTGGATTTTGGGATAATAATTGGCAACT
ATCGACCTTTCTTATATAACTTCAATTTTAAA
Length of 3' end seq. 632
Connected seq. ID VHI326P
Connected seq. 
>VHI326P.Seq
ACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAATATCCC
AAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCACCATTTC
CAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATAATATAC
CAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTGGATGGA
ATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATGTAAATT
GGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGGGAATTT
CAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTGCAAAGT
TTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAATTTAATT
CAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAGAGGCAG
CAAGTTATCAATGTGAAATCATAACA----------GTACAAATATTAGATTATCCAATT
TTAATTGTTTATGGTACAATTGGAAGTGAACAACAAACCAATCAACGTCAACAATCTGCA
GTTTATTTATCAACTGTTTTAATGTATCAAATGAGATATTCAATAAATGTTTTAGAGGAT
ACTCAATTCACAAATGACTTATTCACAACTTATAATGTAATATTTATGGGAGGCCCACAA
ACAAATAAAGCAGTTTACTCAATTCAATCAGTTTTACCATCACCAATTGGTTTCCATGGT
TCAAGTGATAATATGTCATTCTCTTTAAATGATGATTCAAATATGTTTTCAGGTCCTTCT
GTTGGTTTATTGTTTTTATCATCATGTTATTCACCAGAGGCCATTATGAAAATTACACCA
AAAGAACGTTATACTCAAGCTAGACAAGGTTGTATGCTTACAGTTATTGAGGGTACTGAT
ACTATTGGTTTCCAAAATAGTCTTTTCAATTTCCCAACTAAATCATCTTTCCCAATGCCA
GATTTCATGATATTAGGTCCAAATTTTGGTTATCAAGGTGTATCGGGTGCTAATGCTCTT
GGATTTTGGGATAATAATTGGCAACTATCGACCTTTCTTATATAACTTCAATTTTAAA
Length of connected seq. 1188
Full length Seq ID -
Full length Seq. -
Length of full length seq. -