VHI308 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHI308
Library	VH (Link to library)
Clone ID	VHI308 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16583-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHI3-A/VHI308Q.Seq.d/
Representative seq. ID	VHI308P (Link to Original site)
Representative DNA sequence	>VHI308 (VHI308Q) /CSM/VH/VHI3-A/VHI308Q.Seq.d/ AGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATAT TGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGAC AGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCC AAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTA AAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAAT GTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTGGTAGCAAATATTCAAAA GAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGG TGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCG AAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAAT TCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCG GTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCXXXXXXXXXXCTC ACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAGTACTAATCGGAACTGG GAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCTAGAGGTGTCAGAAAA GTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGA TCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTT CACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACC CTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATG CCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTG GATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTA GAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAAC CATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAA TTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACT AGGTGCTGTAAGCTTNCCGAGTAGCGTTCAGTTACGAGGGGTTGAG
sequence update	2002.10.25
Translated Amino Acid sequence	ralsgpflvsrtgdvgtkywdktsnihipqkvlvhdsrtvamevgirgvcnnspa kwtspengrqwmvdaqslkeviilltcrkarrrslnvnssgvvfsadldggskysk eftlkaevgkgsitmeftygvdpkvwvnsl*gyvigskvkvaltlvtlaereagN SCTIEWDIRVTDRNPGHQLAVEEELSFLVNIVLGS--- ---SRRVKGQKPAffsvligtgkpgpidplcailslevseklpqglacgsqaliat llfdpsmsalliivkqnsqsvglfthqgtagfrpsdrlvlpyccqlfa*hdlvre elscritglvyltk*paatirwimaerlvrihsrnanqmlsvnvvgnirllvgdhf qlti*liavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsxpssvqlrgve
Translated Amino Acid sequence (All Frames)	Frame A: ralsgpflvsrtgdvgtkywdktsnihipqkvlvhdsrtvamevgirgvcnnspa kwtspengrqwmvdaqslkeviilltcrkarrrslnvnssgvvfsadldggskysk eftlkaevgkgsitmeftygvdpkvwvnsl*gyvigskvkvaltlvtlaereagN SCTIEWDIRVTDRNPGHQLAVEEELSFLVNIVLGS--- ---ltskrakaclilifstnrnwetrayrsfmclnlkprgvrkvttgitglwqpsahsd aafsfdvgssyhceaeftkcwivhpltrnvswvtvvrqvsftlllsivcvivafstr gtvmpdhwsvglfdkivtcryhpldngtplsqnpfkrkpnalececcrhvvgggpl stlnhminrcytavsfrllwwvakffissfrstlrlttiktrccklxersvtrg* Frame B: ellvghfwaelamwvepnigirrltftnryhkrcfiktagrwpwksvsakecvtthlp nglalkmddassgwsmpnrkkyfrvgrregnveamirvelslvqilmvvaniqk nllrpkwgrvpqwnslmgesilrfgltlsnkvtrsldrkrwlh*lyrpkgkrvki papsngilgpivirdinwrsrksylflltlswgp--- ---SRRVKGQKPAffsvligtgkpgpidplcailslevseklpqglacgsqaliat llfdpsmsalliivkqnsqsvglfthqgtagfrpsdrlvlpyccqlfa*hdlvre elscritglvyltk*paatirwimaerlvrihsrnanqmlsvnvvgnirllvgdhf qltiliavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsxpssvqlrgve Frame C: sswaifgkqnwrcglnqilgdvhslidttkgvsslrqqdgghgsryplrsvqltcq mdpkwmtlavdgrcpivkrsdntfnvegvkvtklecefewsclcrswwqifkr iyfegrsgegfhnngihlwvsrsglglslirllghwieseggfntsdfigrkgsglkf lhhrmgygnrssgtsiggrgrvifschclgvl--- ---hvekgkslldsdfqyselgnqglsilyvlksarcqksyhrdnwlvaakrsrr cflilrcrlflslsrihkvldcsptnkerelgldrretgfyptvvnclrnssmiyer nchagslvcrfiqnsdlplpsvgwlnasksesiletqtkcfrvmlvtlgcwwgttf nfkpydsllhcsflpvivvggiliyilvplnssivddyqmnvl*axrvafsyegl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHI308 (VHI308Q) /CSM/VH/VHI3-A/VHI308Q.Seq.d/ 2642 0.0 VHD536 (VHD536Q) /CSM/VH/VHD5-B/VHD536Q.Seq.d/ 1400 0.0 VHD131 (VHD131Q) /CSM/VH/VHD1-B/VHD131Q.Seq.d/ 1400 0.0 VHQ477 (VHQ477Q) /CSM/VH/VHQ4-D/VHQ477Q.Seq.d/ 1390 0.0 VHK846 (VHK846Q) /CSM/VH/VHK8-B/VHK846Q.Seq.d/ 1390 0.0 VHK190 (VHK190Q) /CSM/VH/VHK1-D/VHK190Q.Seq.d/ 1390 0.0 VHI522 (VHI522Q) /CSM/VH/VHI5-A/VHI522Q.Seq.d/ 1390 0.0 VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/ 1390 0.0 VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/ 1390 0.0 VHA465 (VHA465Q) /CSM/VH/VHA4-C/VHA465Q.Seq.d/ 1390 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ441594) Dictyostelium discoideum cDNA clone:ddv47p01, 3' ... 1400 0.0 1 (BJ438739) Dictyostelium discoideum cDNA clone:ddv38g09, 3' ... 1400 0.0 1 (BJ438598) Dictyostelium discoideum cDNA clone:ddv37m07, 3' ... 1400 0.0 1 (BJ438017) Dictyostelium discoideum cDNA clone:ddv36h06, 3' ... 1380 0.0 1 (BJ350145) Dictyostelium discoideum cDNA clone:dda38j23, 3' ... 1380 0.0 1 (AY171066) Dictyostelium discoideum extrachromosomal palindr... 1344 0.0 2 (BJ446798) Dictyostelium discoideum cDNA clone:ddv63j20, 3' ... 1344 0.0 2 (BJ446700) Dictyostelium discoideum cDNA clone:ddv63f17, 3' ... 1344 0.0 2 (BJ443278) Dictyostelium discoideum cDNA clone:ddv52o12, 3' ... 1344 0.0 2 (BJ443266) Dictyostelium discoideum cDNA clone:ddv52l12, 3' ... 1344 0.0 2
dna update	2008.11.12
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value EU430725_1(EU430725\|pid:none) Cupressus sempervirens clone CYPLP... 140 1e-31 AY436773_1(AY436773\|pid:none) Pyrus communis putative senescence... 104 9e-21 CP001575_406(CP001575\|pid:none) Micromonas sp. RCC299 chromosome... 102 2e-20 AK230153_1(AK230153\|pid:none) Arabidopsis thaliana mRNA for hypo... 99 3e-19 CP000497_644(CP000497\|pid:none) Pichia stipitis CBS 6054 chromos... 60 3e-13 EF192058_1(EF192058\|pid:none) Trichosanthes dioica clone TDM04 p... 78 7e-13 EU244380_1(EU244380\|pid:none) Haliotis diversicolor clone HDr4CJ... 73 2e-11 BC114377_1(BC114377\|pid:none) Homo sapiens cDNA clone MGC:134704... 68 9e-10 AL844507_287(AL844507\|pid:none) Plasmodium falciparum 3D7 chromo... 66 3e-09 U12823_1(U12823\|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo... 42 2e-04
protein update	2009. 7.13
PSORT	psg: 0.75 gvh: 0.53 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: cytoplasmic 28.0 %: nuclear 8.0 %: mitochondrial 8.0 %: peroxisomal >> prediction for VHI308 is cyt
5' end seq. ID	VHI308F
5' end seq.	>VHI308F.Seq AGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATAT TGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGAC AGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCC AAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTA AAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAAT GTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTGGTAGCAAATATTCAAAA GAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGG TGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCG AAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAAT TCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCG GTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCNNNNNNNNNN
Length of 5' end seq.	657
3' end seq. ID	VHI308Z
3' end seq.	>VHI308Z.Seq NNNNNNNNNNCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAGTAC TAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCTAG AGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGA CGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAA GTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACA GGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAG AGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCG CTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAA ACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACT TTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTG GTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGAC TATCAAATGAACTAGGTGCTGTAAGCTTNCCGAGTAGCGTTCAGTTACGAGGGGTTGAG
Length of 3' end seq.	719
Connected seq. ID	VHI308P
Connected seq.	>VHI308P.Seq AGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATAT TGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGAC AGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCC AAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTA AAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAAT GTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTGGTAGCAAATATTCAAAA GAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGG TGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCG AAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAAT TCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCG GTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTC----------CTC ACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAGTACTAATCGGAACTGG GAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCTAGAGGTGTCAGAAAA GTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGA TCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTT CACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACC CTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATG CCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTG GATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTA GAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAAC CATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAA TTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACT AGGTGCTGTAAGCTTNCCGAGTAGCGTTCAGTTACGAGGGGTTGAG
Length of connected seq.	1356
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas