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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI287
Library VH
(Link to library)
Clone ID VHI287
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15507-1
Original site URL
Representative seq. ID VHI287P
(Link to Original site)
Representative DNA sequence 
>VHI287 (VHI287Q) /CSM/VH/VHI2-D/VHI287Q.Seq.d/
ATATTAAATTAATTAGTGATCTCTATGATAAATGTCAAGAAACTTTAATTCAGTATACTG
AATTCCTTACAAATCATGCAACATCTGAAAAGTATTCAGAATTCTTTAAAGAGGATTTCA
ATACATTAATCACAACCTATTGCCTAGAGCCAGAAGCTGCTTTTCATATTTATAGACCAA
TATTTTCAAATGGTGCTGCCAATAATAGACAATTAATTGTAAATAACTGTAAACAAATTT
ATCCTGATGAAGTTTGGAAATCAATGAATCCTGAACTATATTCTGTATTTTGGTCATATT
CATTATATGACATTTATGTACCAAAAGCATTATATGAAAGTGAAATTGCAAAATTAAAGA
ATCAAATTACAACAATTGATTATGGTTTAGTTGGTACTACTACTACTACCACTGCTACTG
CTAGTGGTAGTGGTGGAGGTAATTCTAAAGATATTAATAAAAAGAAAAAAGATAAAGAAA
GAATTCAATCAACAATTGAAAAACTTCAAAAAGAATTGGCAATTCAAACTTTAAATCATC
AAAAAGTTTTANAACATATTCAATCATTAAAAGATAAATTCTTTGAATTTTCATTAAATT
CACCTGTNAAXXXXXXXXXXAATAATAATAGTAATAGTAATGAAAGAAATGATNGTAATG
ATAGTAGTAGAGAAAGACAGGATAATAGTAATGAAAGAAATGATAGTAGAGAAAGACAAG
ACACTAGAGATAATCGTAAAGATCANCAAAGAGATAATGATNAATCAAATCAAGTGCAAA
GGANTCGTGATTCTCAACCATCGTCANGTAATTCTTCACCACCCCATAACCAACCACAAC
AACATCAATCACAGCANCAACAACCACAACAACTTTNTCCACCAATTCCACAAACCGATG
AAGAGAAATTTAATAATGCAAAGAAAAAGAGAGAAGAGAAATTTGAAAGTAAACAAAAAA
ATAATAATGANATCGATCAAGAATCACCTCCAAATAATAATAATAATAGTANTCAATCAT
CAAATTCAAATCCATCTTCAAATCAAAGTAGTAGATCAAATAGTAAGGATAGAAGTGGTG
GTCAACAAACTCCTCGTGATAATCAAGAAAGACAAAGTGGTGNNAATAATAATAATAACA
ACAATAATAATAATAACACTAGAGATGACCATGATAATAAAGATNAATTAAAAGAAATGA
GAGATAATATTCGTAAAAAACAAGAAAGTAATAATAATCAAAATAATAATCAAAATAATA
ATAATAATAATAATAATAATCATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATGCACCACAAGAAAATAGNAGNGGNATAAAAAGAGAG
sequence update 2002.10.25
Translated Amino Acid sequence 
IKLISDLYDKCQETLIQYTEFLTNHATSEKYSEFFKEDFNTLITTYCLEPEAAFHIYRPI
FSNGAANNRQLIVNNCKQIYPDEVWKSMNPELYSVFWSYSLYDIYVPKALYESEIAKLKN
QITTIDYGLVGTTTTTTATASGSGGGNSKDINKKKKDKERIQSTIEKLQKELAIQTLNHQ
KVLXHIQSLKDKFFEFSLNSPV---

---NNNSNSNERNDXNDSSRERQDNSNERNDSRERQDTRDNRKDXQRDNDXSNQVQRXRD
SQPSSXNSSPPHNQPQQHQSQXQQPQQLXPPIPQTDEEKFNNAKKKREEKFESKQKNNNX
IDQESPPNNNNNSXQSSNSNPSSNQSSRSNSKDRSGGQQTPRDNQERQSGXNNNNNNNNN
NNTRDDHDNKDXLKEMRDNIRKKQESNNNQNNNQNNNNNNNNNHNNNNNNNNNNNNNNNN
NNAPQENXXGIKRE
Translated Amino Acid sequence (All Frames) 
Frame A:
iln*lvisminvkkl*fsilnslqimqhlksiqnslkrisih*sqpia*sqkllfifidq
yfqmvlpiidn*l*itvnkfilmkfgnq*ilnyilyfghihymtfmyqkhymkvklqn*r
iklqqlimv*lvllllpllllvvvvevilkilikrkkikkefnqqlknfkknwqfkl*ii
kkfxnifnh*kinslnfh*ihlx---

---NNNSNSNERNDXNDSSRERQDNSNERNDSRERQDTRDNRKDXQRDNDXSNQVQRXRD
SQPSSXNSSPPHNQPQQHQSQXQQPQQLXPPIPQTDEEKFNNAKKKREEKFESKQKNNNX
IDQESPPNNNNNSXQSSNSNPSSNQSSRSNSKDRSGGQQTPRDNQERQSGXNNNNNNNNN
NNTRDDHDNKDXLKEMRDNIRKKQESNNNQNNNQNNNNNNNNNHNNNNNNNNNNNNNNNN
NNAPQENXXGIKRE

Frame B:
y*in**sl**msrnfnsvy*ipykscni*kvfril*rgfqyinhnllprarscfsyl*tn
ifkwccq**tinck*l*tnls**sleines*tifcilvifii*hlctksii*k*nckike
snynn*lwfswyyyyyhcyc*w*wwr*f*ry**kekr*rknsinn*ktskrignsnfkss
ksfxtysiikr*il*ifikftcx---

---iiivivmkemxvmivvekdriivmkemivekdktleiivkixkeimxnqikckgxvi
lnhrxvilhhpitnhnninhsxnnhnnfxhqfhkpmkrnlimqrkrekrnlkvnkkiimx
siknhlqiiiiivxnhqiqihlqikvvdqivrievvvnkllviikkdkvvxiiiittiii
itlemtmiikxn*kk*eiifvknkkviiikiiikiiiiiiiiiiiiiiiiiiiiiiiiii
imhhkkixxx*ke

Frame C:
IKLISDLYDKCQETLIQYTEFLTNHATSEKYSEFFKEDFNTLITTYCLEPEAAFHIYRPI
FSNGAANNRQLIVNNCKQIYPDEVWKSMNPELYSVFWSYSLYDIYVPKALYESEIAKLKN
QITTIDYGLVGTTTTTTATASGSGGGNSKDINKKKKDKERIQSTIEKLQKELAIQTLNHQ
KVLXHIQSLKDKFFEFSLNSPV---

---*******kk*x*****rktg****kk***rktrh*r*s*rsxkr**xikssakxs*f
stivx*ffttp*pttttsitaxtttttxstnstnr*rei**ckekerrei*k*tkk***x
rsritsk*****xsiikfksifksk**ik**g*kwwstnss**srktkwxx****qq***
*h*r*p***rxikrner*ys*ktrk***sk**sk********s*****************
*cttrk*xxxkkr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI287 (VHI287Q) /CSM/VH/VHI2-D/VHI287Q.Seq.d/                        908   0.0
CHR503 (CHR503Q) /CSM/CH/CHR5-A/CHR503Q.Seq.d/                        908   0.0
VHK408 (VHK408Q) /CSM/VH/VHK4-A/VHK408Q.Seq.d/                        839   0.0
CHI541 (CHI541Q) /CSM/CH/CHI5-B/CHI541Q.Seq.d/                        831   0.0
CHH442 (CHH442Q) /CSM/CH/CHH4-B/CHH442Q.Seq.d/                        533   e-150
VHM375 (VHM375Q) /CSM/VH/VHM3-D/VHM375Q.Seq.d/                        331   2e-89
VHB745 (VHB745Q) /CSM/VH/VHB7-B/VHB745Q.Seq.d/                        170   4e-41
SLB668 (SLB668Q) /CSM/SL/SLB6-C/SLB668Q.Seq.d/                        137   5e-31
CHB241 (CHB241Q) /CSM/CH/CHB2-B/CHB241Q.Seq.d/                        117   5e-25
SLC137 (SLC137Q) /CSM/SL/SLC1-B/SLC137Q.Seq.d/                         56   1e-06
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423053) Dictyostelium discoideum cDNA clone:ddv47m22, 5' ...   884   0.0    2
(BJ371194) Dictyostelium discoideum cDNA clone:ddc57e01, 5' ...   884   0.0    2
(BJ442870) Dictyostelium discoideum cDNA clone:ddv51p02, 3' ...   839   0.0    1
(BJ380763) Dictyostelium discoideum cDNA clone:ddc39a11, 3' ...   831   0.0    1
(BJ441802) Dictyostelium discoideum cDNA clone:ddv47m22, 3' ...   381   0.0    4
(BJ365696) Dictyostelium discoideum cDNA clone:ddc36d12, 5' ...   509   e-166  2
(BJ444263) Dictyostelium discoideum cDNA clone:ddv55f19, 3' ...   307   e-136  3
(BJ386062) Dictyostelium discoideum cDNA clone:ddc57e01, 3' ...   357   7e-94  1
(BJ437472) Dictyostelium discoideum cDNA clone:ddv34j11, 3' ...   153   5e-36  2
(BJ377347) Dictyostelium discoideum cDNA clone:ddc24a12, 3' ...   101   1e-20  2
dna update 2008.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC144931_11(AC144931|pid:none) Medicago truncatula clone mth2-22...    85   7e-15
AC141922_17(AC141922|pid:none) Medicago truncatula clone mth2-9n...    85   7e-15
AP008207_3465(AP008207|pid:none) Oryza sativa (japonica cultivar...    80   1e-13
BC160769_1(BC160769|pid:none) Xenopus laevis hypothetical protei...    80   2e-13
BC161300_1(BC161300|pid:none) Xenopus tropicalis hypothetical pr...    77   2e-12
AL627383_2(AL627383|pid:none) Zebrafish DNA sequence from clone ...    74   9e-12
BC063692_1(BC063692|pid:none) Homo sapiens THO complex 2, mRNA (...    74   9e-12
AL954355_1(AL954355|pid:none) Mouse DNA sequence from clone RP23...    74   9e-12
AK296780_1(AK296780|pid:none) Homo sapiens cDNA FLJ61096 partial...    74   9e-12
AY648818_1(AY648818|pid:none) Danio rerio Tho2 mRNA, complete cds.     74   9e-12
protein update 2009. 7.13
PSORT 

 psg: 0.67  gvh: 0.32  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHI287 is cyt
5' end seq. ID VHI287F
5' end seq. 
>VHI287F.Seq
ATATTAAATTAATTAGTGATCTCTATGATAAATGTCAAGAAACTTTAATTCAGTATACTG
AATTCCTTACAAATCATGCAACATCTGAAAAGTATTCAGAATTCTTTAAAGAGGATTTCA
ATACATTAATCACAACCTATTGCCTAGAGCCAGAAGCTGCTTTTCATATTTATAGACCAA
TATTTTCAAATGGTGCTGCCAATAATAGACAATTAATTGTAAATAACTGTAAACAAATTT
ATCCTGATGAAGTTTGGAAATCAATGAATCCTGAACTATATTCTGTATTTTGGTCATATT
CATTATATGACATTTATGTACCAAAAGCATTATATGAAAGTGAAATTGCAAAATTAAAGA
ATCAAATTACAACAATTGATTATGGTTTAGTTGGTACTACTACTACTACCACTGCTACTG
CTAGTGGTAGTGGTGGAGGTAATTCTAAAGATATTAATAAAAAGAAAAAAGATAAAGAAA
GAATTCAATCAACAATTGAAAAACTTCAAAAAGAATTGGCAATTCAAACTTTAAATCATC
AAAAAGTTTTANAACATATTCAATCATTAAAAGATAAATTCTTTGAATTTTCATTAAATT
CACCTGTNAANNNNNNNNNN
Length of 5' end seq. 620
3' end seq. ID VHI287Z
3' end seq. 
>VHI287Z.Seq
NNNNNNNNNNAATAATAATAGTAATAGTAATGAAAGAAATGATNGTAATGATAGTAGTAG
AGAAAGACAGGATAATAGTAATGAAAGAAATGATAGTAGAGAAAGACAAGACACTAGAGA
TAATCGTAAAGATCANCAAAGAGATAATGATNAATCAAATCAAGTGCAAAGGANTCGTGA
TTCTCAACCATCGTCANGTAATTCTTCACCACCCCATAACCAACCACAACAACATCAATC
ACAGCANCAACAACCACAACAACTTTNTCCACCAATTCCACAAACCGATGAAGAGAAATT
TAATAATGCAAAGAAAAAGAGAGAAGAGAAATTTGAAAGTAAACAAAAAAATAATAATGA
NATCGATCAAGAATCACCTCCAAATAATAATAATAATAGTANTCAATCATCAAATTCAAA
TCCATCTTCAAATCAAAGTAGTAGATCAAATAGTAAGGATAGAAGTGGTGGTCAACAAAC
TCCTCGTGATAATCAAGAAAGACAAAGTGGTGNNAATAATAATAATAACAACAATAATAA
TAATAACACTAGAGATGACCATGATAATAAAGATNAATTAAAAGAAATGAGAGATAATAT
TCGTAAAAAACAAGAAAGTAATAATAATCAAAATAATAATCAAAATAATAATAATAATAA
TAATAATAATCATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATGCACCACAAGAAAATAGNAGNGGNATAAAAAGAGAG
Length of 3' end seq. 763
Connected seq. ID VHI287P
Connected seq. 
>VHI287P.Seq
ATATTAAATTAATTAGTGATCTCTATGATAAATGTCAAGAAACTTTAATTCAGTATACTG
AATTCCTTACAAATCATGCAACATCTGAAAAGTATTCAGAATTCTTTAAAGAGGATTTCA
ATACATTAATCACAACCTATTGCCTAGAGCCAGAAGCTGCTTTTCATATTTATAGACCAA
TATTTTCAAATGGTGCTGCCAATAATAGACAATTAATTGTAAATAACTGTAAACAAATTT
ATCCTGATGAAGTTTGGAAATCAATGAATCCTGAACTATATTCTGTATTTTGGTCATATT
CATTATATGACATTTATGTACCAAAAGCATTATATGAAAGTGAAATTGCAAAATTAAAGA
ATCAAATTACAACAATTGATTATGGTTTAGTTGGTACTACTACTACTACCACTGCTACTG
CTAGTGGTAGTGGTGGAGGTAATTCTAAAGATATTAATAAAAAGAAAAAAGATAAAGAAA
GAATTCAATCAACAATTGAAAAACTTCAAAAAGAATTGGCAATTCAAACTTTAAATCATC
AAAAAGTTTTANAACATATTCAATCATTAAAAGATAAATTCTTTGAATTTTCATTAAATT
CACCTGTNAA----------AATAATAATAGTAATAGTAATGAAAGAAATGATNGTAATG
ATAGTAGTAGAGAAAGACAGGATAATAGTAATGAAAGAAATGATAGTAGAGAAAGACAAG
ACACTAGAGATAATCGTAAAGATCANCAAAGAGATAATGATNAATCAAATCAAGTGCAAA
GGANTCGTGATTCTCAACCATCGTCANGTAATTCTTCACCACCCCATAACCAACCACAAC
AACATCAATCACAGCANCAACAACCACAACAACTTTNTCCACCAATTCCACAAACCGATG
AAGAGAAATTTAATAATGCAAAGAAAAAGAGAGAAGAGAAATTTGAAAGTAAACAAAAAA
ATAATAATGANATCGATCAAGAATCACCTCCAAATAATAATAATAATAGTANTCAATCAT
CAAATTCAAATCCATCTTCAAATCAAAGTAGTAGATCAAATAGTAAGGATAGAAGTGGTG
GTCAACAAACTCCTCGTGATAATCAAGAAAGACAAAGTGGTGNNAATAATAATAATAACA
ACAATAATAATAATAACACTAGAGATGACCATGATAATAAAGATNAATTAAAAGAAATGA
GAGATAATATTCGTAAAAAACAAGAAAGTAATAATAATCAAAATAATAATCAAAATAATA
ATAATAATAATAATAATAATCATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATGCACCACAAGAAAATAGNAGNGGNATAAAAAGAGAG
Length of connected seq. 1363
Full length Seq ID -
Full length Seq. -
Length of full length seq. -