>VHI285 (VHI285Q) /CSM/VH/VHI2-D/VHI285Q.Seq.d/
ATTATCTTCACACACCCACACACACAAACAAAAATAAAAAAAATAAAAAAAAGATATATG
ACATTATAATGAAAATATTTTAGGTTTTAAAAAAAATTTATACATTCTCAGAAAATAAAA
AAAAAAXXXXXXXXXX

YLHTPTHTNKNKKNKKKIYDIIMKIF*vlkkiytfsenkkk---

Frame A:
iifthphtqtkikkikkrymtl**kyfrf*kkfihsqkikk---


Frame B:
lsshththkqk*kk*kkdi*hynenilgfkknlyilrk*kk---


Frame C:
YLHTPTHTNKNKKNKKKIYDIIMKIF*vlkkiytfsenkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI285 (VHI285Q) /CSM/VH/VHI2-D/VHI285Q.Seq.d/                         80   9e-15
VHD154 (VHD154Q) /CSM/VH/VHD1-C/VHD154Q.Seq.d/                         80   9e-15
SHF535 (SHF535Q) /CSM/SH/SHF5-B/SHF535Q.Seq.d/                         80   9e-15
SFH844 (SFH844Q) /CSM/SF/SFH8-B/SFH844Q.Seq.d/                         80   9e-15
SFA556 (SFA556Q) /CSM/SF/SFA5-C/SFA556Q.Seq.d/                         80   9e-15
CHM580 (CHM580Q) /CSM/CH/CHM5-D/CHM580Q.Seq.d/                         80   9e-15
SFJ416 (SFJ416Q) /CSM/SF/SFJ4-A/SFJ416Q.Seq.d/                         72   2e-12
VFN537 (VFN537Q) /CSM/VF/VFN5-B/VFN537Q.Seq.d/                         36   0.12
SSI265 (SSI265Q) /CSM/SS/SSI2-C/SSI265Q.Seq.d/                         36   0.12
SSC732 (SSC732Q) /CSM/SS/SSC7-B/SSC732Q.Seq.d/                         36   0.12

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423035) Dictyostelium discoideum cDNA clone:ddv47i22, 5' ...    72   2e-27  3
(BJ419916) Dictyostelium discoideum cDNA clone:ddv37k13, 5' ...    72   2e-27  3
(BJ387452) Dictyostelium discoideum cDNA clone:dds2o13, 5' e...    72   2e-27  3
(BJ394476) Dictyostelium discoideum cDNA clone:dds35e09, 5' ...    72   2e-27  3
(BJ388817) Dictyostelium discoideum cDNA clone:dds16h12, 5' ...    72   3e-27  3
(BJ368748) Dictyostelium discoideum cDNA clone:ddc47o19, 5' ...    72   3e-22  3
(BJ389563) Dictyostelium discoideum cDNA clone:dds19p04, 5' ...    72   1e-20  2
(AC148721) Ictalurus punctatus clone CH212-49F22, WORKING DR...    46   4e-04  2
(CR391919) Zebrafish DNA sequence from clone DKEY-174K18 in ...    48   0.072  1
(AE014298) Drosophila melanogaster chromosome X, complete se...    48   0.072  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 144,188,930

 psg: 0.23  gvh: -0.27  alm: 0.75  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VHI285 is nuc

>VHI285F.Seq
ATTATCTTCACACACCCACACACACAAACAAAAATAAAAAAAATAAAAAAAAGATATATG
ACATTATAATGAAAATATTTTAGGTTTTAAAAAAAATTTATACATTCTCAGAAAATAAAA
AAAAAANNNNNNNNNN