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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI275
Library VH
(Link to library)
Clone ID VHI275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHI275 (VHI275Q) /CSM/VH/VHI2-D/VHI275Q.Seq.d/
TAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAG
CAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAG
GCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGAT
CTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGT
TCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTC
TAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTA
TAGGCCGAAAGGGAAGCGGGTTAAAATACCTGCACCATCGAATGGGATATTAGGGTAACC
GATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCTTGTTAACATT
GTCTTGGGGTCCTCCGAATCAGGTCAACTGGAGACGAGGATTCATCGCACAATGGAAGAG
CACAGTCCTTTGGATTGGGTCTCGCATCCGCTAAATGGTCCTTGAAAACCGGATTATGGT
ATTTAATCCTATTTGGTGTTCGTACCAATAACCAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsad
ldgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl
*aereag*NTCTIEWDIRVTDRNPGHQLAVEEELSFLVNIVLGSSESGQLETRIHRTMEE
HSPLDWVSHPLNGP*kpdygi*sylvfvpit---
Translated Amino Acid sequence (All Frames) 
Frame A:
*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsad
ldgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl
*aereag*NTCTIEWDIRVTDRNPGHQLAVEEELSFLVNIVLGSSESGQLETRIHRTMEE
HSPLDWVSHPLNGP*kpdygi*sylvfvpit---


Frame B:
kecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvqi
lmvvaniqknll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**ly
rpkgkrvkipapsngilg*pivirdinwrsrksylflltlswgppnqvnwrrgfiaqwks
tvlwigsrir*mvlenrimvfnpiwcsyq*---


Frame C:
rsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs
*w**qifkriyfegrsgegfhnngihlwvsrs*glg*lslirllghwieseggfntsdfi
grkgsglkylhhrmgy*gnrs*sgtsiggrgrvifsc*hclgvlrirstgdedsshngra
qsfglglasakwslktglwylilfgvrtnn---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI275 (VHI275Q) /CSM/VH/VHI2-D/VHI275Q.Seq.d/                       1257   0.0
FCL-AB07 (FCL-AB07Q) /CSM/FCL/FCL-AB/FCL-AB07Q.Seq.d/                1249   0.0
VHO574 (VHO574Q) /CSM/VH/VHO5-D/VHO574Q.Seq.d/                       1241   0.0
VHO746 (VHO746Q) /CSM/VH/VHO7-B/VHO746Q.Seq.d/                       1029   0.0
VHI611 (VHI611Q) /CSM/VH/VHI6-A/VHI611Q.Seq.d/                       1029   0.0
VHC234 (VHC234Q) /CSM/VH/VHC2-B/VHC234Q.Seq.d/                       1025   0.0
CHN103 (CHN103Q) /CSM/CH/CHN1-A/CHN103Q.Seq.d/                       1009   0.0
VHJ767 (VHJ767Q) /CSM/VH/VHJ7-C/VHJ767Q.Seq.d/                        999   0.0
VHI876 (VHI876Q) /CSM/VH/VHI8-D/VHI876Q.Seq.d/                        985   0.0
CHP689 (CHP689Q) /CSM/CH/CHP6-D/CHP689Q.Seq.d/                        979   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ423014) Dictyostelium discoideum cDNA clone:ddv47e20, 5' ...  1257   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1249   0.0    1
(AU285032) Dictyostelium discoideum gamete cDNA clone:FCL-AB...  1249   0.0    1
(BJ426942) Dictyostelium discoideum cDNA clone:ddv60c19, 5' ...  1241   0.0    1
(X00601) Dictyostelium discoideum ribosomal RNA gene.            1225   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...  1209   0.0    1
(BJ426835) Dictyostelium discoideum cDNA clone:ddv60l11, 5' ...  1029   0.0    1
(BJ423094) Dictyostelium discoideum cDNA clone:ddv48e04, 5' ...  1029   0.0    1
(BJ419171) Dictyostelium discoideum cDNA clone:ddv35c10, 5' ...  1025   0.0    1
(BJ368772) Dictyostelium discoideum cDNA clone:ddc48e01, 5' ...  1009   0.0    1
dna update 2008.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   1e-04
(B1YGV6) RecName: Full=30S ribosomal protein S3;  &CP001022_101(...    33   9.3
protein update 2009. 7.13
PSORT 

 psg: 0.75  gvh: 0.56  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for VHI275 is cyt
5' end seq. ID VHI275F
5' end seq. 
>VHI275F.Seq
TAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAG
CAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAG
GCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGAT
CTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGT
TCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTC
TAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTA
TAGGCCGAAAGGGAAGCGGGTTAAAATACCTGCACCATCGAATGGGATATTAGGGTAACC
GATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCTTGTTAACATT
GTCTTGGGGTCCTCCGAATCAGGTCAACTGGAGACGAGGATTCATCGCACAATGGAAGAG
CACAGTCCTTTGGATTGGGTCTCGCATCCGCTAAATGGTCCTTGAAAACCGGATTATGGT
ATTTAATCCTATTTGGTGTTCGTACCAATAACCANNNNNNNNNN
Length of 5' end seq. 644
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -