VHI256
Library VH
(Link to library)
Clone ID VHI256
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15499-1
Original site URL
Representative seq. ID VHI256P
(Link to Original site)
Representative DNA sequence
>VHI256 (VHI256Q) /CSM/VH/VHI2-C/VHI256Q.Seq.d/
CTATGGAAAAGAAAAAAGGCTTTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAA
GTGCATCAGCAGGGTTCTTTGGTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAAT
ATGAAGAAACTGTTACATCAGAGACAACTCACACATGGAAACAAACTCTCACTGAGGGAA
CTTATATTGTTTATCAAAATGTTCTTGTTTATGCATATACAATAGTATTATCACTAAATC
AAACTAATACTATAAATCAATATAACCCAGGTATGAATTTGAGATATATCCAACAAATAG
ATCGTGCTGTTATGTTTGTACCAATCAATCGTGATGATCCATTCACTCTTCGTTATCAAG
ATGCCACATGGGATCCAGTGGAGTATGATTCATTAATTAACTATTTGGTTGCAAATCCAA
GTAAATGGAGATCTGATTCATAAAGAAATAACCAAAAAAAGGTTTTAAATAATAAAATCA
TGATTTTTATTATTTCACTAAAAAAAAAAXXXXXXXXXXCTATGGAAAAGAAAAAAGGCT
TTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAAGTGCATCAGCAGGGTTCTTTG
GTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAATATGAAGAAACTGTTACATCAG
AGACAACTCACACATGGAAACAAACTCTCACTGAGGGAACTTATATTGTTTATCAAAATG
TTCTTGTTTATGCATATACAATAGTATTATCACTAAATCAAACTAATACTATAAATCAAT
ATAACCCAGGTATGAATTTGAGATATATCCAACAAATAGATCGTGCTGTTATGTTTGTAC
CAATCAATCGTGATGATCCATTCACTCTTCGTTATCAAGATGCCACATGGGATCCAGTGG
AGTATGATTCATTAATTAACTATTTGGTTGCAAATCCAAGTAAATGGAGATCTGATTCAT
AAAGAAATAACCAAAAAAAGGTTTTAAATAATAAAATCANATTTTTAT
sequence update 2002.10.25
Translated Amino Acid sequence
mekkkgftsrfnasteikasasagffgceaslevttgfeyeetvtsetthtwkqtltegt
yivyqnvlvyaytivlslnqtntinqynpgmnlryiqqidravmfvpinrddpftlryqd
atwdpveydslinylvanpskwrsds*RNNQKKVLNNKIMIFIISLKKK---

---MEKKKGFTSRFNASTEIKASASAGFFGCEASLEVTTGFEYEETVTSETTHTWKQTLT
EGTYIVYQNVLVYAYTIVLSLNQTNTINQYNPGMNLRYIQQIDRAVMFVPINRDDPFTLR
YQDATWDPVEYDSLINYLVANPSKWRSDS*rnnqkkvlnnkixfl


Translated Amino Acid sequence (All Frames)
Frame A:
lwkrkkallqdlmpvlklrqvhqqgslvvkhhsk*plvsnmkkllhqrqlthgnklslre
lilfikmflfmhiq*yyh*iklil*initqv*i*disnk*ivllclyqsivmihslfvik
mphgiqwsmih*ltiwlqiqvngdlihkeitkkrf*iiks*fllfh*kk---

---lwkrkkallqdlmpvlklrqvhqqgslvvkhhsk*plvsnmkkllhqrqlthgnkls
lrelilfikmflfmhiq*yyh*iklil*initqv*i*disnk*ivllclyqsivmihslf
vikmphgiqwsmih*ltiwlqiqvngdlihkeitkkrf*iiksxfy

Frame B:
ygkekrlyfki*cqy*n*gkcisrvlwl*sitrsdhwfri*rncyirdnshmetnsh*gn
lyclskcsclciynsiitksn*yyksi*pryefeiyptnrsccyvctnqs**sihsslsr
chmgssgv*fin*lfgcksk*mei*fikk*pkkgfk**nhdfyyftkkk---

---ygkekrlyfki*cqy*n*gkcisrvlwl*sitrsdhwfri*rncyirdnshmetnsh
*gnlyclskcsclciynsiitksn*yyksi*pryefeiyptnrsccyvctnqs**sihss
lsrchmgssgv*fin*lfgcksk*mei*fikk*pkkgfk**nxif

Frame C:
mekkkgftsrfnasteikasasagffgceaslevttgfeyeetvtsetthtwkqtltegt
yivyqnvlvyaytivlslnqtntinqynpgmnlryiqqidravmfvpinrddpftlryqd
atwdpveydslinylvanpskwrsds*RNNQKKVLNNKIMIFIISLKKK---

---MEKKKGFTSRFNASTEIKASASAGFFGCEASLEVTTGFEYEETVTSETTHTWKQTLT
EGTYIVYQNVLVYAYTIVLSLNQTNTINQYNPGMNLRYIQQIDRAVMFVPINRDDPFTLR
YQDATWDPVEYDSLINYLVANPSKWRSDS*rnnqkkvlnnkixfl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSB592 (VSB592Q) /CSM/VS/VSB5-D/VSB592Q.Seq.d/ 948 0.0
VHI264 (VHI264Q) /CSM/VH/VHI2-C/VHI264Q.Seq.d/ 948 0.0
VHI256 (VHI256Q) /CSM/VH/VHI2-C/VHI256Q.Seq.d/ 948 0.0
VFF853 (VFF853Q) /CSM/VF/VFF8-C/VFF853Q.Seq.d/ 948 0.0
SSA683 (SSA683Q) /CSM/SS/SSA6-D/SSA683Q.Seq.d/ 936 0.0
VFL580 (VFL580Q) /CSM/VF/VFL5-D/VFL580Q.Seq.d/ 934 0.0
VHG246 (VHG246Q) /CSM/VH/VHG2-B/VHG246Q.Seq.d/ 922 0.0
VHD159 (VHD159Q) /CSM/VH/VHD1-C/VHD159Q.Seq.d/ 922 0.0
VHB316 (VHB316Q) /CSM/VH/VHB3-A/VHB316Q.Seq.d/ 922 0.0
VHP850 (VHP850Q) /CSM/VH/VHP8-C/VHP850Q.Seq.d/ 920 0.0

own update 2002.12.31
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ428620) Dictyostelium discoideum cDNA clone:ddv12j14, 3' ... 898 0.0 2
(AU262120) Dictyostelium discoideum vegetative cDNA clone:VS... 898 0.0 2
(BJ422989) Dictyostelium discoideum cDNA clone:ddv47o16, 5' ... 898 0.0 2
(BJ422987) Dictyostelium discoideum cDNA clone:ddv47o14, 5' ... 898 0.0 2
(C83934) Dictyostelium discoideum slug cDNA, clone SSA683. 886 0.0 2
(BJ437106) Dictyostelium discoideum cDNA clone:ddv33p03, 3' ... 898 0.0 2
(BJ440343) Dictyostelium discoideum cDNA clone:ddv43k12, 3' ... 898 0.0 2
(BJ438313) Dictyostelium discoideum cDNA clone:ddv37e15, 3' ... 898 0.0 2
(BJ441742) Dictyostelium discoideum cDNA clone:ddv47o16, 3' ... 898 0.0 2
(BJ441740) Dictyostelium discoideum cDNA clone:ddv47o14, 3' ... 898 0.0 2
dna update 2008.11.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso... 51 6e-05
AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso... 46 0.002
CP000712_1048(CP000712|pid:none) Pseudomonas putida F1, complete... 44 0.009
CU928171_317(CU928171|pid:none) Kluyveromyces thermotolerans str... 36 1.8
AE017226_1555(AE017226|pid:none) Treponema denticola ATCC 35405,... 35 5.4

protein update 2009. 7.13
PSORT

psg: 0.99 gvh: 0.48 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: nuclear
28.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHI256 is nuc

5' end seq. ID VHI256F
5' end seq.
>VHI256F.Seq
CTATGGAAAAGAAAAAAGGCTTTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAA
GTGCATCAGCAGGGTTCTTTGGTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAAT
ATGAAGAAACTGTTACATCAGAGACAACTCACACATGGAAACAAACTCTCACTGAGGGAA
CTTATATTGTTTATCAAAATGTTCTTGTTTATGCATATACAATAGTATTATCACTAAATC
AAACTAATACTATAAATCAATATAACCCAGGTATGAATTTGAGATATATCCAACAAATAG
ATCGTGCTGTTATGTTTGTACCAATCAATCGTGATGATCCATTCACTCTTCGTTATCAAG
ATGCCACATGGGATCCAGTGGAGTATGATTCATTAATTAACTATTTGGTTGCAAATCCAA
GTAAATGGAGATCTGATTCATAAAGAAATAACCAAAAAAAGGTTTTAAATAATAAAATCA
TGATTTTTATTATTTCACTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 519
3' end seq. ID VHI256Z
3' end seq.
>VHI256Z.Seq
NNNNNNNNNNCTATGGAAAAGAAAAAAGGCTTTACTTCAAGATTTAATGCCAGTACTGAA
ATTAAGGCAAGTGCATCAGCAGGGTTCTTTGGTTGTGAAGCATCACTCGAAGTGACCACT
GGTTTCGAATATGAAGAAACTGTTACATCAGAGACAACTCACACATGGAAACAAACTCTC
ACTGAGGGAACTTATATTGTTTATCAAAATGTTCTTGTTTATGCATATACAATAGTATTA
TCACTAAATCAAACTAATACTATAAATCAATATAACCCAGGTATGAATTTGAGATATATC
CAACAAATAGATCGTGCTGTTATGTTTGTACCAATCAATCGTGATGATCCATTCACTCTT
CGTTATCAAGATGCCACATGGGATCCAGTGGAGTATGATTCATTAATTAACTATTTGGTT
GCAAATCCAAGTAAATGGAGATCTGATTCATAAAGAAATAACCAAAAAAAGGTTTTAAAT
AATAAAATCANATTTTTAT
Length of 3' end seq. 499
Connected seq. ID VHI256P
Connected seq.
>VHI256P.Seq
CTATGGAAAAGAAAAAAGGCTTTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAA
GTGCATCAGCAGGGTTCTTTGGTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAAT
ATGAAGAAACTGTTACATCAGAGACAACTCACACATGGAAACAAACTCTCACTGAGGGAA
CTTATATTGTTTATCAAAATGTTCTTGTTTATGCATATACAATAGTATTATCACTAAATC
AAACTAATACTATAAATCAATATAACCCAGGTATGAATTTGAGATATATCCAACAAATAG
ATCGTGCTGTTATGTTTGTACCAATCAATCGTGATGATCCATTCACTCTTCGTTATCAAG
ATGCCACATGGGATCCAGTGGAGTATGATTCATTAATTAACTATTTGGTTGCAAATCCAA
GTAAATGGAGATCTGATTCATAAAGAAATAACCAAAAAAAGGTTTTAAATAATAAAATCA
TGATTTTTATTATTTCACTAAAAAAAAAA----------CTATGGAAAAGAAAAAAGGCT
TTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAAGTGCATCAGCAGGGTTCTTTG
GTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAATATGAAGAAACTGTTACATCAG
AGACAACTCACACATGGAAACAAACTCTCACTGAGGGAACTTATATTGTTTATCAAAATG
TTCTTGTTTATGCATATACAATAGTATTATCACTAAATCAAACTAATACTATAAATCAAT
ATAACCCAGGTATGAATTTGAGATATATCCAACAAATAGATCGTGCTGTTATGTTTGTAC
CAATCAATCGTGATGATCCATTCACTCTTCGTTATCAAGATGCCACATGGGATCCAGTGG
AGTATGATTCATTAATTAACTATTTGGTTGCAAATCCAAGTAAATGGAGATCTGATTCAT
AAAGAAATAACCAAAAAAAGGTTTTAAATAATAAAATCANATTTTTAT
Length of connected seq. 998
Full length Seq ID -
Full length Seq. -
Length of full length seq. -