VHI243
Library VH
(Link to library)
Clone ID VHI243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12322-1|Contig-U13649-1
Original site URL
Representative seq. ID VHI243P
(Link to Original site)
Representative DNA sequence
>VHI243 (VHI243Q) /CSM/VH/VHI2-B/VHI243Q.Seq.d/
AAACTTTTTAGATAATATTCCAGTTACACCATTTGCTGATTATTCAAGTAAAGTCATTTT
CGATTGGCAAGTTGTTGATAAAGAATCATTAGAGAATCAAGTTAATTTCTATAAAGCACT
CACTGATAACTTGAAAACCACTGCTACATTTGCAAAGGTATTGGATGGTGCAATTCGTGA
TATTTGTTCTTATGATGTTGGTAAAAATGAATTTGTCAATTGTACAACTTTTATTCTTCG
TGATATTATCAGAGCTAAAGAAGAGGTTGTTAAAAATACAACACCATCAACTTGGGAATT
CTCAGCATGTTTCCATGGTCCAGCTTTAAGTACAAATAAATCAACCTTAACAACTCTATT
CAAAGAAACTTTATCAGTTGCCTTCCCATGTGCTATTCAAGATACATTCCCATTAATTGA
TGAATTAGTTGAAGATTTAGAAAGTTCAACAGGTAAGAAAGTACCAGTTGTAATTAATTA
TGATAGTTGGAGAAATGTTGAATCATTTAGAGATGATACCACATCTTATAAAAGTATTAA
AGATATCGTTGTTAATGTACCXXXXXXXXXXATTAAAGTACTTTATAAACAAATTCAAGC
AAATACCAATAATTATGAATCCTATGGTAGACAAATTGAAAATGTTATGGGCTTACGTAT
GATGATGATTCAAGGTTATATTAAACGTAATAATCCACCAGCCATTGAAGATGCTAAATC
ACGTTTAAGAGAAGCCGTTGAAATGGATGTTAGTTTAGAAATTGAATGGTCTTCAATCAT
TGATCATCCATCATTTAATAAGATTGTTGAATTTGTTCCAGTATTAAAGAATATCGTTTC
ATTATCAGCCCAACTCAATCCATTAGTTAAATTATGTCGTGAAAATTTCGAAGCTAAAGC
TCAACTTAAAGCAGTACGTAATTATACAATCATTGTTGATGGTAGTAGTCGTGTCGATGA
AGGTGAATTTGATGCCAATAAATTTGGTGTTGACTGGGCTAAAGTATCATGGAAAGCTCC
ACCAGCTCGTGATCATATCGTAGTTACCGTCAATCTCGAATCAATCATTAAAACTTCACC
ACATGACCTTTCAATTGAAGATAAAATCGAATTCCTTGTCACTCCAGATAAGGCAATTGA
ACGTTTCAATAGAAAAGAAGATTTAGAAAATCGTGAACATGATAGACGTATGGCAGAACG
TCGTCATAATGAACAAATGCGTGCTGCATGAAAGATTAGCTGATGCTGCTCGTGATAGAA
ATAGAGAATTAGNAAAGCATTAAATAGAAATTTAACAAGNAAGATATTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
NFLDNIPVTPFADYSSKVIFDWQVVDKESLENQVNFYKALTDNLKTTATFAKVLDGAIRD
ICSYDVGKNEFVNCTTFILRDIIRAKEEVVKNTTPSTWEFSACFHGPALSTNKSTLTTLF
KETLSVAFPCAIQDTFPLIDELVEDLESSTGKKVPVVINYDSWRNVESFRDDTTSYKSIK
DIVVNV---

---IKVLYKQIQANTNNYESYGRQIENVMGLRMMMIQGYIKRNNPPAIEDAKSRLREAVE
MDVSLEIEWSSIIDHPSFNKIVEFVPVLKNIVSLSAQLNPLVKLCRENFEAKAQLKAVRN
YTIIVDGSSRVDEGEFDANKFGVDWAKVSWKAPPARDHIVVTVNLESIIKTSPHDLSIED
KIEFLVTPDKAIERFNRKEDLENREHDRRMAERRHNEQMRAA*kis*ccs**k*rixkal
nrnltxkilk


Translated Amino Acid sequence (All Frames)
Frame A:
klfr*yssytic*lfk*shfrlasc**riiress*fl*sth**lenhcyickgigwcns*
ylfl*cw*k*icqlynfyss*yyqs*rrgc*kyntinlgilsmfpwssfkyk*inlnnsi
qrnfisclpmcysryipin**is*rfrkfnr*estscn*l**lekc*ii*r*yhil*ky*
ryrc*ct---

---IKVLYKQIQANTNNYESYGRQIENVMGLRMMMIQGYIKRNNPPAIEDAKSRLREAVE
MDVSLEIEWSSIIDHPSFNKIVEFVPVLKNIVSLSAQLNPLVKLCRENFEAKAQLKAVRN
YTIIVDGSSRVDEGEFDANKFGVDWAKVSWKAPPARDHIVVTVNLESIIKTSPHDLSIED
KIEFLVTPDKAIERFNRKEDLENREHDRRMAERRHNEQMRAA*kis*ccs**k*rixkal
nrnltxkilk

Frame B:
NFLDNIPVTPFADYSSKVIFDWQVVDKESLENQVNFYKALTDNLKTTATFAKVLDGAIRD
ICSYDVGKNEFVNCTTFILRDIIRAKEEVVKNTTPSTWEFSACFHGPALSTNKSTLTTLF
KETLSVAFPCAIQDTFPLIDELVEDLESSTGKKVPVVINYDSWRNVESFRDDTTSYKSIK
DIVVNV---

---lkyfinkfkqipiimnpmvdklkmlwayv***fkvilnviihqplkmlnhv*ekplk
wmlv*klnglqsliihhlirllnlfqy*risfhyqpnsih*lnyvvkisklklnlkqyvi
iqsllmvvvvsmkvnlmpinlvltglkyhgklhqlviis*lpsisnqslklhhmtfqlki
ksnslslqirqlnvsiekki*kivnmidvwqnvvimnkcvlherladaardrnrelxkh*
iei*qxry*

Frame C:
tf*iifqlhhlliiqvksfsigklliknh*riklisikhslit*kpllhlqrywmvqfvi
fvlmmlvkmnlsivqllffvilselkkrllkiqhhqlgnsqhvsmvql*vqinqp*qlys
kklyqlpshvlfkihsh*lmn*lki*kvqqvrkyql*limivgemlnhlemiphlikvlk
isllmy---

---*stl*tnsskyq*l*ilw*tn*kcygltydddsrly*t**stsh*rc*itfkrsr*n
gc*frn*mvfnh*ssii**dc*icssikeyrfiisptqsis*ims*kfrs*sst*sst*l
ynhc*w**scr*r*i*cq*iwc*lg*simesstss*syrsyrqsrinh*nftt*pfn*r*
nripchsr*gn*tfq*krrfrks*t**tygrtss**tnaccmkd*lmllvieien*xsik
*kfnkxdik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI243 (VHI243Q) /CSM/VH/VHI2-B/VHI243Q.Seq.d/ 2529 0.0
VFI146 (VFI146Q) /CSM/VF/VFI1-B/VFI146Q.Seq.d/ 1398 0.0
VHQ185 (VHQ185Q) /CSM/VH/VHQ1-D/VHQ185Q.Seq.d/ 1362 0.0
VHO557 (VHO557Q) /CSM/VH/VHO5-C/VHO557Q.Seq.d/ 1358 0.0
VHG509 (VHG509Q) /CSM/VH/VHG5-A/VHG509Q.Seq.d/ 1243 0.0
VHG770 (VHG770Q) /CSM/VH/VHG7-C/VHG770Q.Seq.d/ 1031 0.0
VFM737 (VFM737Q) /CSM/VF/VFM7-B/VFM737Q.Seq.d/ 44 0.005
VSE838 (VSE838Q) /CSM/VS/VSE8-B/VSE838Q.Seq.d/ 40 0.084
VHI702 (VHI702Q) /CSM/VH/VHI7-A/VHI702Q.Seq.d/ 40 0.084
SLI889 (SLI889Q) /CSM/SL/SLI8-D/SLI889Q.Seq.d/ 40 0.084

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ441623) Dictyostelium discoideum cDNA clone:ddv47e12, 3' ... 1457 0.0 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 1291 0.0 3
(BJ432031) Dictyostelium discoideum cDNA clone:ddv17k11, 3' ... 1281 0.0 3
(BJ445736) Dictyostelium discoideum cDNA clone:ddv60a15, 3' ... 1279 0.0 4
(BJ446794) Dictyostelium discoideum cDNA clone:ddv63i21, 3' ... 1249 0.0 3
(BJ440533) Dictyostelium discoideum cDNA clone:ddv44a03, 3' ... 1130 0.0 4
(BJ422871) Dictyostelium discoideum cDNA clone:ddv47e12, 5' ... 1112 0.0 1
(BJ427865) Dictyostelium discoideum cDNA clone:ddv63i21, 5' ... 1088 0.0 1
(BJ422049) Dictyostelium discoideum cDNA clone:ddv44l17, 5' ... 1031 0.0 1
(BJ421831) Dictyostelium discoideum cDNA clone:ddv44a03, 5' ... 505 e-138 1
dna update 2008.11.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000612_2643(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 36 2.7
CP000510_2057(CP000510|pid:none) Psychromonas ingrahamii 37, com... 35 4.6
AE014296_2334(AE014296|pid:none) Drosophila melanogaster chromos... 35 7.8

protein update 2009. 3.11
PSORT

psg: 0.75 gvh: 0.42 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VHI243 is cyt

5' end seq. ID VHI243F
5' end seq.
>VHI243F.Seq
AAACTTTTTAGATAATATTCCAGTTACACCATTTGCTGATTATTCAAGTAAAGTCATTTT
CGATTGGCAAGTTGTTGATAAAGAATCATTAGAGAATCAAGTTAATTTCTATAAAGCACT
CACTGATAACTTGAAAACCACTGCTACATTTGCAAAGGTATTGGATGGTGCAATTCGTGA
TATTTGTTCTTATGATGTTGGTAAAAATGAATTTGTCAATTGTACAACTTTTATTCTTCG
TGATATTATCAGAGCTAAAGAAGAGGTTGTTAAAAATACAACACCATCAACTTGGGAATT
CTCAGCATGTTTCCATGGTCCAGCTTTAAGTACAAATAAATCAACCTTAACAACTCTATT
CAAAGAAACTTTATCAGTTGCCTTCCCATGTGCTATTCAAGATACATTCCCATTAATTGA
TGAATTAGTTGAAGATTTAGAAAGTTCAACAGGTAAGAAAGTACCAGTTGTAATTAATTA
TGATAGTTGGAGAAATGTTGAATCATTTAGAGATGATACCACATCTTATAAAAGTATTAA
AGATATCGTTGTTAATGTACCNNNNNNNNNN
Length of 5' end seq. 571
3' end seq. ID VHI243Z
3' end seq.
>VHI243Z.Seq
NNNNNNNNNNATTAAAGTACTTTATAAACAAATTCAAGCAAATACCAATAATTATGAATC
CTATGGTAGACAAATTGAAAATGTTATGGGCTTACGTATGATGATGATTCAAGGTTATAT
TAAACGTAATAATCCACCAGCCATTGAAGATGCTAAATCACGTTTAAGAGAAGCCGTTGA
AATGGATGTTAGTTTAGAAATTGAATGGTCTTCAATCATTGATCATCCATCATTTAATAA
GATTGTTGAATTTGTTCCAGTATTAAAGAATATCGTTTCATTATCAGCCCAACTCAATCC
ATTAGTTAAATTATGTCGTGAAAATTTCGAAGCTAAAGCTCAACTTAAAGCAGTACGTAA
TTATACAATCATTGTTGATGGTAGTAGTCGTGTCGATGAAGGTGAATTTGATGCCAATAA
ATTTGGTGTTGACTGGGCTAAAGTATCATGGAAAGCTCCACCAGCTCGTGATCATATCGT
AGTTACCGTCAATCTCGAATCAATCATTAAAACTTCACCACATGACCTTTCAATTGAAGA
TAAAATCGAATTCCTTGTCACTCCAGATAAGGCAATTGAACGTTTCAATAGAAAAGAAGA
TTTAGAAAATCGTGAACATGATAGACGTATGGCAGAACGTCGTCATAATGAACAAATGCG
TGCTGCATGAAAGATTAGCTGATGCTGCTCGTGATAGAAATAGAGAATTAGNAAAGCATT
AAATAGAAATTTAACAAGNAAGATATTAAAA
Length of 3' end seq. 751
Connected seq. ID VHI243P
Connected seq.
>VHI243P.Seq
AAACTTTTTAGATAATATTCCAGTTACACCATTTGCTGATTATTCAAGTAAAGTCATTTT
CGATTGGCAAGTTGTTGATAAAGAATCATTAGAGAATCAAGTTAATTTCTATAAAGCACT
CACTGATAACTTGAAAACCACTGCTACATTTGCAAAGGTATTGGATGGTGCAATTCGTGA
TATTTGTTCTTATGATGTTGGTAAAAATGAATTTGTCAATTGTACAACTTTTATTCTTCG
TGATATTATCAGAGCTAAAGAAGAGGTTGTTAAAAATACAACACCATCAACTTGGGAATT
CTCAGCATGTTTCCATGGTCCAGCTTTAAGTACAAATAAATCAACCTTAACAACTCTATT
CAAAGAAACTTTATCAGTTGCCTTCCCATGTGCTATTCAAGATACATTCCCATTAATTGA
TGAATTAGTTGAAGATTTAGAAAGTTCAACAGGTAAGAAAGTACCAGTTGTAATTAATTA
TGATAGTTGGAGAAATGTTGAATCATTTAGAGATGATACCACATCTTATAAAAGTATTAA
AGATATCGTTGTTAATGTACC----------ATTAAAGTACTTTATAAACAAATTCAAGC
AAATACCAATAATTATGAATCCTATGGTAGACAAATTGAAAATGTTATGGGCTTACGTAT
GATGATGATTCAAGGTTATATTAAACGTAATAATCCACCAGCCATTGAAGATGCTAAATC
ACGTTTAAGAGAAGCCGTTGAAATGGATGTTAGTTTAGAAATTGAATGGTCTTCAATCAT
TGATCATCCATCATTTAATAAGATTGTTGAATTTGTTCCAGTATTAAAGAATATCGTTTC
ATTATCAGCCCAACTCAATCCATTAGTTAAATTATGTCGTGAAAATTTCGAAGCTAAAGC
TCAACTTAAAGCAGTACGTAATTATACAATCATTGTTGATGGTAGTAGTCGTGTCGATGA
AGGTGAATTTGATGCCAATAAATTTGGTGTTGACTGGGCTAAAGTATCATGGAAAGCTCC
ACCAGCTCGTGATCATATCGTAGTTACCGTCAATCTCGAATCAATCATTAAAACTTCACC
ACATGACCTTTCAATTGAAGATAAAATCGAATTCCTTGTCACTCCAGATAAGGCAATTGA
ACGTTTCAATAGAAAAGAAGATTTAGAAAATCGTGAACATGATAGACGTATGGCAGAACG
TCGTCATAATGAACAAATGCGTGCTGCATGAAAGATTAGCTGATGCTGCTCGTGATAGAA
ATAGAGAATTAGNAAAGCATTAAATAGAAATTTAACAAGNAAGATATTAAAA
Length of connected seq. 1302
Full length Seq ID -
Full length Seq. -
Length of full length seq. -