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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI239
Library VH
(Link to library)
Clone ID VHI239
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15819-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHI239 (VHI239Q) /CSM/VH/VHI2-B/VHI239Q.Seq.d/
CAGGTAAAACTGAAGCAGCAAAATTAATTATGCAATATATTGCAGCAGTCTCTGGTAAGG
GTGCCGATGTATCAAGAGTAAAAGATGTAATCTTGGAATCAAATCCATTGTTGGAAGCAT
TTGGTAATGCAAAAACTTTACGTAATAATAATTCATCACGTTTTGGTAAATATATGGAAG
TTCAATTCAATGGTATCGGTGATCCAGAAGGTGGTGGAGTTACCAATTATCTCTTAGAAA
AATCACGTGTTGTCTATCAAACTAAAGGTGAAAGAAATTTTCATATCTTTTATCAATTAT
TATCTGGTGCAAATCAACAATTAAAAAGTGAATTAAGATTAGATACACCAGATAAATTTA
ATTATTTATCAGCAAGTGGTTGTTATACTGTTGATGGAGTTGATGATTCAGGTGAATTTC
AAGATGTTTGTAAAGCAATGAAAGTTATTGGATTGACTGATAGTGAACAAAAGGAAGTAT
TTAGATTGGTAGCAGCTATTCTATATTTGGGTAATGTTGGATTTAAGAATAATGCAAAAG
ATGAGGCAGCTATTGATCAACAATCAAAGAAAGCATTGGAGAATTTTGCATTCTTGATGC
AAACCGATGTATCATCATGTGAGAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
GKTEAAKLIMQYIAAVSGKGADVSRVKDVILESNPLLEAFGNAKTLRNNNSSRFGKYMEV
QFNGIGDPEGGGVTNYLLEKSRVVYQTKGERNFHIFYQLLSGANQQLKSELRLDTPDKFN
YLSASGCYTVDGVDDSGEFQDVCKAMKVIGLTDSEQKEVFRLVAAILYLGNVGFKNNAKD
EAAIDQQSKKALENFAFLMQTDVSSCE---
Translated Amino Acid sequence (All Frames) 
Frame A:
qvklkqqn*lcnilqqslvrvpmyqe*km*swnqihcwkhlvmqklyviiihhvlvniwk
fnsmvsviqkvvelpiis*knhvlsiklkvkeifisfinyylvqinn*kvn*d*ihqinl
iiyqqvvvillmelmiqvnfkmfvkq*klld*livnkrkyldw*qlfyiwvmldlrimqk
mrqllinnqrkhwrilhs*ckpmyhhvr---


Frame B:
r*n*sskinyaiycsslw*gcrcikskrcnlgiksivgsiw*cknft***fitfw*iygs
siqwyr*srrwwsyqlslrkitcclsn*r*kkfsyllsiiiwckstikk*ikirytr*i*
lfiskwllyc*ws**fr*isrcl*snesywid***tkgsi*igssysifg*cwi*e*ckr
*gsy*stikesigefcildanrciim*---


Frame C:
GKTEAAKLIMQYIAAVSGKGADVSRVKDVILESNPLLEAFGNAKTLRNNNSSRFGKYMEV
QFNGIGDPEGGGVTNYLLEKSRVVYQTKGERNFHIFYQLLSGANQQLKSELRLDTPDKFN
YLSASGCYTVDGVDDSGEFQDVCKAMKVIGLTDSEQKEVFRLVAAILYLGNVGFKNNAKD
EAAIDQQSKKALENFAFLMQTDVSSCE---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI239 (VHI239Q) /CSM/VH/VHI2-B/VHI239Q.Seq.d/                       1239   0.0
CHP376 (CHP376Q) /CSM/CH/CHP3-D/CHP376Q.Seq.d/                       1017   0.0
VHM193 (VHM193Q) /CSM/VH/VHM1-D/VHM193Q.Seq.d/                       1013   0.0
VHA579 (VHA579Q) /CSM/VH/VHA5-D/VHA579Q.Seq.d/                        928   0.0
VHD144 (VHD144Q) /CSM/VH/VHD1-B/VHD144Q.Seq.d/                        922   0.0
AHR329 (AHR329Q) /CSM/AH/AHR3-B/AHR329Q.Seq.d/                        718   0.0
SHK634 (SHK634Q) /CSM/SH/SHK6-B/SHK634Q.Seq.d/                        476   e-133
VHD717 (VHD717Q) /CSM/VH/VHD7-A/VHD717Q.Seq.d/                        341   8e-93
VHH859 (VHH859Q) /CSM/VH/VHH8-C/VHH859Q.Seq.d/                        121   1e-26
SHL671 (SHL671Q) /CSM/SH/SHL6-C/SHL671Q.Seq.d/                        121   1e-26
own update 2003. 6.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ422906) Dictyostelium discoideum cDNA clone:ddv47m10, 5' ...  1239   0.0    1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...   644   0.0    2
(L16509) Dictyostelium discoideum mRNA sequence.                  636   0.0    2
(BJ370010) Dictyostelium discoideum cDNA clone:ddc52h19, 5' ...  1017   0.0    1
(BJ425481) Dictyostelium discoideum cDNA clone:ddv55i23, 5' ...  1013   0.0    1
(BJ418484) Dictyostelium discoideum cDNA clone:ddv32m19, 5' ...   928   0.0    1
(BJ419822) Dictyostelium discoideum cDNA clone:ddv37g11, 5' ...   922   0.0    1
(BJ339442) Dictyostelium discoideum cDNA clone:dda65j07, 5' ...   718   0.0    1
(BJ397155) Dictyostelium discoideum cDNA clone:dds45c10, 5' ...   476   e-130  1
(BJ420030) Dictyostelium discoideum cDNA clone:ddv38b05, 5' ...   341   2e-89  1
dna update 2008.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A47106(A47106;B47106)myosin heavy chain ID - slime mold (Dictyos...   407   e-112
AF051353_1(AF051353|pid:none) Acanthamoeba castellanii myosin IC...   261   1e-68
(P19706) RecName: Full=Myosin heavy chain IB; AltName: Full=Myos...   237   2e-61
MWAXIB(JQ0095;B34448)myosin heavy chain IB - Acanthamoeba castel...   234   1e-60
(P22467) RecName: Full=Myosin IA heavy chain; AltName: Full=Myos...   234   2e-60
A33284(A33284) myosin heavy chain IB - slime mold (Dictyostelium...   231   2e-59
(P10569) RecName: Full=Myosin IC heavy chain;  &J02974_1(J02974|...   231   2e-59
(A6SED8) RecName: Full=Myosin-1; AltName: Full=Class I unconvent...   225   7e-58
(Q7SDM3) RecName: Full=Myosin-1; AltName: Full=Class I unconvent...   223   4e-57
AF248488_1(AF248488|pid:none) Strongylocentrotus purpuratus amoe...   221   1e-56
protein update 2009. 7.13
PSORT 

 psg: 0.87  gvh: 0.46  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VHI239 is cyt
5' end seq. ID VHI239F
5' end seq. 
>VHI239F.Seq
CAGGTAAAACTGAAGCAGCAAAATTAATTATGCAATATATTGCAGCAGTCTCTGGTAAGG
GTGCCGATGTATCAAGAGTAAAAGATGTAATCTTGGAATCAAATCCATTGTTGGAAGCAT
TTGGTAATGCAAAAACTTTACGTAATAATAATTCATCACGTTTTGGTAAATATATGGAAG
TTCAATTCAATGGTATCGGTGATCCAGAAGGTGGTGGAGTTACCAATTATCTCTTAGAAA
AATCACGTGTTGTCTATCAAACTAAAGGTGAAAGAAATTTTCATATCTTTTATCAATTAT
TATCTGGTGCAAATCAACAATTAAAAAGTGAATTAAGATTAGATACACCAGATAAATTTA
ATTATTTATCAGCAAGTGGTTGTTATACTGTTGATGGAGTTGATGATTCAGGTGAATTTC
AAGATGTTTGTAAAGCAATGAAAGTTATTGGATTGACTGATAGTGAACAAAAGGAAGTAT
TTAGATTGGTAGCAGCTATTCTATATTTGGGTAATGTTGGATTTAAGAATAATGCAAAAG
ATGAGGCAGCTATTGATCAACAATCAAAGAAAGCATTGGAGAATTTTGCATTCTTGATGC
AAACCGATGTATCATCATGTGAGAANNNNNNNNNN
Length of 5' end seq. 635
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -