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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI233
Library VH
(Link to library)
Clone ID VHI233
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16440-1
Original site URL
Representative seq. ID VHI233P
(Link to Original site)
Representative DNA sequence 
>VHI233 (VHI233Q) /CSM/VH/VHI2-B/VHI233Q.Seq.d/
AAAGTTGTAAATATATATAAAAACAAATAAATAAAAGGAGGAAATTATAAAATGAAGATT
TCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATACT
ATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAAT
AAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACA
AATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGT
AATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGA
AAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTT
CCACATAAAGTTGTATCAGTTTCACCACATTTAAATATTGAGGGTTTAGTGATTGCACGT
TCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCC
AATGGTGATGTTTTATTCACACCAGGTGGTTCAAGCTTTCXXXXXXXXXXGAGGATGAAT
ATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGTATTGCCATCTCCTTGCGATG
ATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAA
CTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATT
GTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCA
GTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATT
GTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTC
AAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTG
TTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTG
GCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTT
TTGGTTTCTACATTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTT
TTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATG
ATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAATNATAANATTTACAAGATAA
CGAAGATTTTTAAAAAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
kvvniyknk*IKGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLYTN
KDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYG
KTQISVSNDAGQTFSTSAVFPHKVVSVSPHLNIEGLVIARSDNFILISEDFGLTWNNASS
NGDVLFTPGGSSF---

---EDEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQA
QISNKYCECTVEDFECDIGYESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITE
ENCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILA
LAGLGGFGFYIFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILN
XXIYKITKIFKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
kvvniyknk*IKGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLYTN
KDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYG
KTQISVSNDAGQTFSTSAVFPHKVVSVSPHLNIEGLVIARSDNFILISEDFGLTWNNASS
NGDVLFTPGGSSF---

---EDEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQA
QISNKYCECTVEDFECDIGYESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITE
ENCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILA
LAGLGGFGFYIFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILN
XXIYKITKIFKKK

Frame B:
kl*iyiktnk*keeiik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhyiqi
kmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlme
kpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*hgtmhhp
mvmfyshqvvqaf---

---rmnmisvk*lvli*qmychllamipqcnliplvvf*vkkqliellnqipivi*pnkh
kfqinivnvqskilnvilvtkvqtiavpimmvlplvfhldlqnn*ivvnqllhnmfqslk
kivhqvkpisnqkvseeslphnv*vvlmqlihqrlscvhqkilqvvakvgslvllllfll
*lvlvvlvstflriqisnkny*kwlvfqrsvqnivlsvlnqth*lmmnlvlkmmmlkf*x
ixftr*rrflkkn

Frame C:
sckyi*kqinkrrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistiiyk*
r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilwk
npnfsik*crsnifnlssfst*scisfttfky*gfsdctfr*fhfn**rfwfnmeqciiq
w*cfihtrwfkl---

---g*i*yrsndwc*fnkciaislr*flnailyhslyfr*knnl*nc*tkyqllydptst
nfk*il*mysrrf*m*ywlrkcrr*qfr**wfylwysiwifrtiels*incfticsnh*r
klytrsnlyqikrfqksrchtmcrwc*cnlftrdchvsikkffkwwqrldrwccycyscf
swswwfwflhf*esrfqtkiikngwffkgrski*cyry*tklis***iwy*r**csnfkx
*xlqdnedf*kki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI233 (VHI233Q) /CSM/VH/VHI2-B/VHI233Q.Seq.d/                       2462   0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/                       1449   0.0
VHI195 (VHI195Q) /CSM/VH/VHI1-D/VHI195Q.Seq.d/                       1449   0.0
VHH854 (VHH854Q) /CSM/VH/VHH8-C/VHH854Q.Seq.d/                       1449   0.0
VHO889 (VHO889Q) /CSM/VH/VHO8-D/VHO889Q.Seq.d/                       1441   0.0
VHD244 (VHD244Q) /CSM/VH/VHD2-B/VHD244Q.Seq.d/                       1439   0.0
SLB162 (SLB162Q) /CSM/SL/SLB1-C/SLB162Q.Seq.d/                       1435   0.0
VHO888 (VHO888Q) /CSM/VH/VHO8-D/VHO888Q.Seq.d/                       1433   0.0
VHQ202 (VHQ202Q) /CSM/VH/VHQ2-A/VHQ202Q.Seq.d/                       1431   0.0
VHD665 (VHD665Q) /CSM/VH/VHD6-C/VHD665Q.Seq.d/                       1431   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441603) Dictyostelium discoideum cDNA clone:ddv47a10, 3' ...  1455   0.0    1
(BJ446610) Dictyostelium discoideum cDNA clone:ddv63d08, 3' ...  1447   0.0    1
(BJ441803) Dictyostelium discoideum cDNA clone:ddv47m23, 3' ...  1447   0.0    1
(BJ441421) Dictyostelium discoideum cDNA clone:ddv46l14, 3' ...  1447   0.0    1
(BJ445823) Dictyostelium discoideum cDNA clone:ddv60b24, 3' ...  1439   0.0    1
(BJ438571) Dictyostelium discoideum cDNA clone:ddv37g12, 3' ...  1439   0.0    1
(BJ441597) Dictyostelium discoideum cDNA clone:ddv47p04, 3' ...  1400   0.0    1
(BJ436620) Dictyostelium discoideum cDNA clone:ddv31a20, 3' ...  1400   0.0    1
(BJ436456) Dictyostelium discoideum cDNA clone:ddv31a07, 3' ...  1400   0.0    1
(BJ380491) Dictyostelium discoideum cDNA clone:ddc38h08, 3' ...  1400   0.0    1
dna update 2008.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...    77   1e-12
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr...    70   2e-10
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ...    70   2e-10
(Q9UPU3) RecName: Full=VPS10 domain-containing receptor SorCS3; ...    67   1e-09
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=...    67   2e-09
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor...    66   3e-09
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ...    66   3e-09
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c...    65   7e-09
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro...    64   1e-08
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor...    63   2e-08
protein update 2009. 7.13
PSORT 

 psg: 1.01  gvh: 0.69  alm: 0.22  top: 0.40  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for VHI233 is exc
5' end seq. ID VHI233F
5' end seq. 
>VHI233F.Seq
AAAGTTGTAAATATATATAAAAACAAATAAATAAAAGGAGGAAATTATAAAATGAAGATT
TCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATACT
ATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAAT
AAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACA
AATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGT
AATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGA
AAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTT
CCACATAAAGTTGTATCAGTTTCACCACATTTAAATATTGAGGGTTTAGTGATTGCACGT
TCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCC
AATGGTGATGTTTTATTCACACCAGGTGGTTCAAGCTTTCNNNNNNNNNN
Length of 5' end seq. 590
3' end seq. ID VHI233Z
3' end seq. 
>VHI233Z.Seq
NNNNNNNNNNGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGT
ATTGCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGG
TGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGC
ACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTA
CGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGG
ATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGA
AGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGC
CACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATC
AAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGC
TTTAGCTGGTCTTGGTGGTTTTGGTTTCTACATTTTTAAGAATCCAGATTTCAAACAAAA
ATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAA
ACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAA
TNATAANATTTACAAGATAACGAAGATTTTTAAAAAAAAATA
Length of 3' end seq. 762
Connected seq. ID VHI233P
Connected seq. 
>VHI233P.Seq
AAAGTTGTAAATATATATAAAAACAAATAAATAAAAGGAGGAAATTATAAAATGAAGATT
TCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATACT
ATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAAAT
AAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAACA
AATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATGGT
AATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATGGA
AAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTTTT
CCACATAAAGTTGTATCAGTTTCACCACATTTAAATATTGAGGGTTTAGTGATTGCACGT
TCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCATCC
AATGGTGATGTTTTATTCACACCAGGTGGTTCAAGCTTTC----------GAGGATGAAT
ATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGTATTGCCATCTCCTTGCGATG
ATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAA
CTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATT
GTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCA
GTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATT
GTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTC
AAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTG
TTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTG
GCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTT
TTGGTTTCTACATTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTT
TTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATG
ATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAATNATAANATTTACAAGATAA
CGAAGATTTTTAAAAAAAAATA
Length of connected seq. 1332
Full length Seq ID -
Full length Seq. -
Length of full length seq. -