VHI214
Library VH
(Link to library)
Clone ID VHI214
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12490-1
Original site URL
Representative seq. ID VHI214P
(Link to Original site)
Representative DNA sequence
>VHI214 (VHI214Q) /CSM/VH/VHI2-A/VHI214Q.Seq.d/
GAATTAGAATGTAGTGGTAATGTAAATGGAATATGTAATAACAATGGTACATGTACTTGT
AAACCACCCTATTTCGGAAATAATTGTGGCTCTATACCATGTCCAACTTCAAACACTCTA
TCATGTAGTGGTAATGGTAATTGTAATAATGTAACTGGTGTATGTAGTTGTAACAAAGAT
TTCTATCAATCCGATTGCTCAAAGAAACATTGCCCCGTTGGTGCCAATGGATTTGAATGT
AGTGGTTATTTAAATGGAATATGTAATGACAATGGTGAATGTTCTTGTATTCCACCCTAT
TATGAAAAAGATTGTGGATATATACTTTGTCCAATTTCCAACTCTCTATCATGTGGTGGT
AATGGTAATTGTAATAATTTAACTGGTGTATGTAGTTGTAACACTGATTACTACGAATCA
GATTGTTCAAAAAAACGTTGTCCCACTGGTTCAAATGGATTTGAATGTAGTGGTAATACC
AATGGAAGATGTGATTCTGAAAGTGGTGAATGTGAATGTAATTCTGATCGTCAAGGTATC
GATTGTGGTACTGGTTTTCGTCAATGCCCAATCTATCAAGATCAATTATGTAATGGTAAA
TCATGTAATAATCAAACGGGTATATGTTCATGTGATCCAGGTGTGACGTTXXXXXXXXXX
TTGCAGGTTTAAATTTACCACTCGATAAAGATGGTATTGAAATCGTTGTAAATATTACAA
ATTATCAATTCCTAAGTGGATTAAATACTTTACAATTGCGTTTCAATTCATTTGCCAATG
AAATTGTTATTAAAGATAGTGATGACGATGATGAAGATTCCGATAGTTCAACAATAAATT
ATGATAATGGATGTAATGAAAGAGAAGCTGAAATTGATACAAAAAATATTGACCCTTCAA
AAACTTTAAACTATATTTCAATTAAAAAGAATTCAAAGGTACTCTTTGGTAGATTCATTA
ATATTGCCATCTCTGATTCAAGACAAACTTTTATTACAAGTGAAATTATTGAAGAAAATA
CAAATTCTTCAGCTATTACAATTGGTATTAATTTACCTCATTGTGTTGATTCATGTTTTA
TAGATCCTCAATTCACACTCTCACCAGATTATTCAACTTATAAATTCTCATGTGTCGTTA
TAATTGTACCTCCTTCCAGAGTTTGGATAATTGTAATTGTTGTGGTTATACCTACCATTA
TTGCTTCGGTTGCTCTTTATTTTGGTATTAGATATTATAAAAAAAATAGATATTCAATTA
GACTATATACTAGAAAAAATCAAGTGCTATTAAAAAGAAAATTACATTAAAAAAAAGTTA
ATAAATAAAAATAATAATAATAATAATAAATTTAA
sequence update 2002.10.25
Translated Amino Acid sequence
ELECSGNVNGICNNNGTCTCKPPYFGNNCGSIPCPTSNTLSCSGNGNCNNVTGVCSCNKD
FYQSDCSKKHCPVGANGFECSGYLNGICNDNGECSCIPPYYEKDCGYILCPISNSLSCGG
NGNCNNLTGVCSCNTDYYESDCSKKRCPTGSNGFECSGNTNGRCDSESGECECNSDRQGI
DCGTGFRQCPIYQDQLCNGKSCNNQTGICSCDPGVT---

---AGLNLPLDKDGIEIVVNITNYQFLSGLNTLQLRFNSFANEIVIKDSDDDDEDSDSST
INYDNGCNEREAEIDTKNIDPSKTLNYISIKKNSKVLFGRFINIAISDSRQTFITSEIIE
ENTNSSAITIGINLPHCVDSCFIDPQFTLSPDYSTYKFSCVVIIVPPSRVWIIVIVVVIP
TIIASVALYFGIRYYKKNRYSIRLYTRKNQVLLKRKLH*kkvnk*k******i*


Translated Amino Acid sequence (All Frames)
Frame A:
ELECSGNVNGICNNNGTCTCKPPYFGNNCGSIPCPTSNTLSCSGNGNCNNVTGVCSCNKD
FYQSDCSKKHCPVGANGFECSGYLNGICNDNGECSCIPPYYEKDCGYILCPISNSLSCGG
NGNCNNLTGVCSCNTDYYESDCSKKRCPTGSNGFECSGNTNGRCDSESGECECNSDRQGI
DCGTGFRQCPIYQDQLCNGKSCNNQTGICSCDPGVT---

---lqv*iyhsikmvlksl*ilqiins*vd*ilyncvsihlpmklllkivmtmmkipivq
q*imimdvmkeklkliqkiltlqkl*tifqlkriqryslvdslilpsliqdklllqvkll
kkiqilqllqlvliylivlihvl*ilnshshqiiqlinshvsl*lyllpefg*l*llwly
lplllrllfilvldiikkidiqldyilekikcy*kenyikkklinknnnnnnkf

Frame B:
n*nvvvm*meyvitmvhvlvnhpiseiivalyhvqlqtlyhvvvmvivim*lvyvvvtki
sinpiaqrniaplvpmdlnvvvi*meyvmtmvnvlvfhpimkkivdiyfvqfptlyhvvv
mvivii*lvyvvvtlittnqivqknvvplvqmdlnvvvipmedvilkvvnvnvilivkvs
ivvlvfvnaqsikinyvmvnhviikrvyvhviqv*r---

---crfkfttr*rwy*nrckyyklsipkwikyftiafqficq*ncy*r***r**rfr*fn
nkl**wm**krs*n*ykky*pfknfklyfn*kefkgtlw*ih*ychl*fktnfyyk*ny*
rkykffsyynwy*ftslc*fmfyrssihtltrlfnl*ilmcrynctsfqsldncnccgyt
yhycfgcslfwy*il*kk*ifn*tiy*kkssaikkkitlkks**ikiiiiiinl

Frame C:
irm*w*ckwnm**qwymyl*ttlfrk*lwlytmsnfkhsim*w*w*l**cnwcm*l*qrf
lsirllketlprwcqwi*m*wlfkwnm**qw*mflystll*krlwiytlsnfqlsimww*
w*l**fnwcm*l*h*llrirlfkktlshwfkwi*m*w*yqwkm*f*kw*m*m*f*ssryr
lwywfssmpnlsrsim*w*im**sngymfm*srcdv---

---AGLNLPLDKDGIEIVVNITNYQFLSGLNTLQLRFNSFANEIVIKDSDDDDEDSDSST
INYDNGCNEREAEIDTKNIDPSKTLNYISIKKNSKVLFGRFINIAISDSRQTFITSEIIE
ENTNSSAITIGINLPHCVDSCFIDPQFTLSPDYSTYKFSCVVIIVPPSRVWIIVIVVVIP
TIIASVALYFGIRYYKKNRYSIRLYTRKNQVLLKRKLH*kkvnk*k******i*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI214 (VHI214Q) /CSM/VH/VHI2-A/VHI214Q.Seq.d/ 2407 0.0
VHP568 (VHP568Q) /CSM/VH/VHP5-C/VHP568Q.Seq.d/ 44 0.006
VHL383 (VHL383Q) /CSM/VH/VHL3-D/VHL383Q.Seq.d/ 44 0.006
VHK233 (VHK233Q) /CSM/VH/VHK2-B/VHK233Q.Seq.d/ 44 0.006
VHJ238 (VHJ238Q) /CSM/VH/VHJ2-B/VHJ238Q.Seq.d/ 44 0.006
VHG752 (VHG752Q) /CSM/VH/VHG7-C/VHG752Q.Seq.d/ 44 0.006
SHG715 (SHG715Q) /CSM/SH/SHG7-A/SHG715Q.Seq.d/ 44 0.006
SHC816 (SHC816Q) /CSM/SH/SHC8-A/SHC816Q.Seq.d/ 44 0.006
AHJ107 (AHJ107Q) /CSM/AH/AHJ1-A/AHJ107Q.Seq.d/ 44 0.006
VHC511 (VHC511Q) /CSM/VH/VHC5-A/VHC511Q.Seq.d/ 42 0.022

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ441573) Dictyostelium discoideum cDNA clone:ddv47k04, 3' ... 1146 0.0 2
(BJ422819) Dictyostelium discoideum cDNA clone:ddv47k04, 5' ... 848 0.0 2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 50 2e-05 9
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 44 0.001 8
(BJ407552) Dictyostelium discoideum cDNA clone:dds38m22, 3' ... 42 0.002 2
(BJ383981) Dictyostelium discoideum cDNA clone:ddc47i20, 3' ... 42 0.004 2
(CP000879) Petrotoga mobilis SJ95, complete genome. 54 0.014 1
(BJ440740) Dictyostelium discoideum cDNA clone:ddv44h13, 3' ... 44 0.015 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 48 0.018 8
(AC177480) Strongylocentrotus purpuratus clone R3-61H2, WORK... 44 0.023 5
dna update 2008.11.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso... 161 4e-38
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 117 7e-25
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 114 8e-24
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 111 7e-23
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso... 108 3e-22
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 107 1e-21
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso... 107 1e-21
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso... 103 2e-20
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 100 9e-20
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 96 2e-18
protein update 2009. 7.13
PSORT

psg: 0.75 gvh: 0.36 alm: 0.12 top: 0.80 tms: 0.07 mit: 0.06 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
8.0 %: Golgi
8.0 %: endoplasmic reticulum
8.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHI214 is cyt

5' end seq. ID VHI214F
5' end seq.
>VHI214F.Seq
GAATTAGAATGTAGTGGTAATGTAAATGGAATATGTAATAACAATGGTACATGTACTTGT
AAACCACCCTATTTCGGAAATAATTGTGGCTCTATACCATGTCCAACTTCAAACACTCTA
TCATGTAGTGGTAATGGTAATTGTAATAATGTAACTGGTGTATGTAGTTGTAACAAAGAT
TTCTATCAATCCGATTGCTCAAAGAAACATTGCCCCGTTGGTGCCAATGGATTTGAATGT
AGTGGTTATTTAAATGGAATATGTAATGACAATGGTGAATGTTCTTGTATTCCACCCTAT
TATGAAAAAGATTGTGGATATATACTTTGTCCAATTTCCAACTCTCTATCATGTGGTGGT
AATGGTAATTGTAATAATTTAACTGGTGTATGTAGTTGTAACACTGATTACTACGAATCA
GATTGTTCAAAAAAACGTTGTCCCACTGGTTCAAATGGATTTGAATGTAGTGGTAATACC
AATGGAAGATGTGATTCTGAAAGTGGTGAATGTGAATGTAATTCTGATCGTCAAGGTATC
GATTGTGGTACTGGTTTTCGTCAATGCCCAATCTATCAAGATCAATTATGTAATGGTAAA
TCATGTAATAATCAAACGGGTATATGTTCATGTGATCCAGGTGTGACGTTNNNNNNNNNN
Length of 5' end seq. 660
3' end seq. ID VHI214Z
3' end seq.
>VHI214Z.Seq
NNNNNNNNNNTTGCAGGTTTAAATTTACCACTCGATAAAGATGGTATTGAAATCGTTGTA
AATATTACAAATTATCAATTCCTAAGTGGATTAAATACTTTACAATTGCGTTTCAATTCA
TTTGCCAATGAAATTGTTATTAAAGATAGTGATGACGATGATGAAGATTCCGATAGTTCA
ACAATAAATTATGATAATGGATGTAATGAAAGAGAAGCTGAAATTGATACAAAAAATATT
GACCCTTCAAAAACTTTAAACTATATTTCAATTAAAAAGAATTCAAAGGTACTCTTTGGT
AGATTCATTAATATTGCCATCTCTGATTCAAGACAAACTTTTATTACAAGTGAAATTATT
GAAGAAAATACAAATTCTTCAGCTATTACAATTGGTATTAATTTACCTCATTGTGTTGAT
TCATGTTTTATAGATCCTCAATTCACACTCTCACCAGATTATTCAACTTATAAATTCTCA
TGTGTCGTTATAATTGTACCTCCTTCCAGAGTTTGGATAATTGTAATTGTTGTGGTTATA
CCTACCATTATTGCTTCGGTTGCTCTTTATTTTGGTATTAGATATTATAAAAAAAATAGA
TATTCAATTAGACTATATACTAGAAAAAATCAAGTGCTATTAAAAAGAAAATTACATTAA
AAAAAAGTTAATAAATAAAAATAATAATAATAATAATAAATTTAA
Length of 3' end seq. 705
Connected seq. ID VHI214P
Connected seq.
>VHI214P.Seq
GAATTAGAATGTAGTGGTAATGTAAATGGAATATGTAATAACAATGGTACATGTACTTGT
AAACCACCCTATTTCGGAAATAATTGTGGCTCTATACCATGTCCAACTTCAAACACTCTA
TCATGTAGTGGTAATGGTAATTGTAATAATGTAACTGGTGTATGTAGTTGTAACAAAGAT
TTCTATCAATCCGATTGCTCAAAGAAACATTGCCCCGTTGGTGCCAATGGATTTGAATGT
AGTGGTTATTTAAATGGAATATGTAATGACAATGGTGAATGTTCTTGTATTCCACCCTAT
TATGAAAAAGATTGTGGATATATACTTTGTCCAATTTCCAACTCTCTATCATGTGGTGGT
AATGGTAATTGTAATAATTTAACTGGTGTATGTAGTTGTAACACTGATTACTACGAATCA
GATTGTTCAAAAAAACGTTGTCCCACTGGTTCAAATGGATTTGAATGTAGTGGTAATACC
AATGGAAGATGTGATTCTGAAAGTGGTGAATGTGAATGTAATTCTGATCGTCAAGGTATC
GATTGTGGTACTGGTTTTCGTCAATGCCCAATCTATCAAGATCAATTATGTAATGGTAAA
TCATGTAATAATCAAACGGGTATATGTTCATGTGATCCAGGTGTGACGTT----------
TTGCAGGTTTAAATTTACCACTCGATAAAGATGGTATTGAAATCGTTGTAAATATTACAA
ATTATCAATTCCTAAGTGGATTAAATACTTTACAATTGCGTTTCAATTCATTTGCCAATG
AAATTGTTATTAAAGATAGTGATGACGATGATGAAGATTCCGATAGTTCAACAATAAATT
ATGATAATGGATGTAATGAAAGAGAAGCTGAAATTGATACAAAAAATATTGACCCTTCAA
AAACTTTAAACTATATTTCAATTAAAAAGAATTCAAAGGTACTCTTTGGTAGATTCATTA
ATATTGCCATCTCTGATTCAAGACAAACTTTTATTACAAGTGAAATTATTGAAGAAAATA
CAAATTCTTCAGCTATTACAATTGGTATTAATTTACCTCATTGTGTTGATTCATGTTTTA
TAGATCCTCAATTCACACTCTCACCAGATTATTCAACTTATAAATTCTCATGTGTCGTTA
TAATTGTACCTCCTTCCAGAGTTTGGATAATTGTAATTGTTGTGGTTATACCTACCATTA
TTGCTTCGGTTGCTCTTTATTTTGGTATTAGATATTATAAAAAAAATAGATATTCAATTA
GACTATATACTAGAAAAAATCAAGTGCTATTAAAAAGAAAATTACATTAAAAAAAAGTTA
ATAAATAAAAATAATAATAATAATAATAAATTTAA
Length of connected seq. 1345
Full length Seq ID -
Full length Seq. -
Length of full length seq. -