VHI213
Library VH
(Link to library)
Clone ID VHI213
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHI213P
(Link to Original site)
Representative DNA sequence
>VHI213 (VHI213Q) /CSM/VH/VHI2-A/VHI213Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAGGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGXXXXXXXXXXATCTCATCCAAAGATGATCCAAAAGCTC
GTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGT
CTTTCGGTCCCGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAAT
ATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTG
TTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACA
CTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATG
CTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTG
CCCCAGAAAACGCTATTGGTGGTATCTACTCTGTACTCAATCGTCGTAGAGGTATTGTTA
TTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTAT
TAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCAC
AATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTG
AAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACA
AATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAGTAATCA
AATCTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQGAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSF---

---ISSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDS
FVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASP
TLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTA
DLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*t
i*valxfsxivikskk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklisls---

---ISSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDS
FVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASP
TLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTA
DLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*t
i*valxfsxivikskk

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnprswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp---

---shpkmiqklvltislittngikmmp*tfglsvpkvtvpisssmspkvfni*mklkil
slvlsngppkkvlfvmkt*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppq
ls*nqst**kllpqktllvvstlysivvevlllvknvvsvphyslskliyqy*npsvspl
iyvptlpvklshnvssiiglqlvlstkirkplksl*pperekv*pqksqiltnstknskq
fkshxsfqx**snlkk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQGAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSF---

---liqr*skssc*lsr**prmg*k*chehlvfrsrr*rcqsprqchqrcsife*n*rff
rwcfpmghqrrccl**kherypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpn
slrtnllsrnycprkrywwyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*
ftfphcrssfptmclrslgfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnn
lsrtxvfkxsnqi*kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI213 (VHI213Q) /CSM/VH/VHI2-A/VHI213Q.Seq.d/ 2516 0.0
VHP407 (VHP407Q) /CSM/VH/VHP4-A/VHP407Q.Seq.d/ 1465 0.0
VHO567 (VHO567Q) /CSM/VH/VHO5-C/VHO567Q.Seq.d/ 1465 0.0
VHK367 (VHK367Q) /CSM/VH/VHK3-C/VHK367Q.Seq.d/ 1465 0.0
VHI467 (VHI467Q) /CSM/VH/VHI4-C/VHI467Q.Seq.d/ 1465 0.0
VHH680 (VHH680Q) /CSM/VH/VHH6-D/VHH680Q.Seq.d/ 1465 0.0
VHB313 (VHB313Q) /CSM/VH/VHB3-A/VHB313Q.Seq.d/ 1465 0.0
VHB194 (VHB194Q) /CSM/VH/VHB1-D/VHB194Q.Seq.d/ 1465 0.0
SHG458 (SHG458Q) /CSM/SH/SHG4-C/SHG458Q.Seq.d/ 1465 0.0
VHQ410 (VHQ410Q) /CSM/VH/VHQ4-A/VHQ410Q.Seq.d/ 1463 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ441565) Dictyostelium discoideum cDNA clone:ddv47i04, 3' ... 1481 0.0 1
(BJ445956) Dictyostelium discoideum cDNA clone:ddv61n02, 3' ... 1465 0.0 1
(BJ445759) Dictyostelium discoideum cDNA clone:ddv60e17, 3' ... 1465 0.0 1
(BJ442990) Dictyostelium discoideum cDNA clone:ddv51f17, 3' ... 1465 0.0 1
(BJ441704) Dictyostelium discoideum cDNA clone:ddv47f18, 3' ... 1465 0.0 1
(BJ441516) Dictyostelium discoideum cDNA clone:ddv46o20, 3' ... 1465 0.0 1
(BJ437318) Dictyostelium discoideum cDNA clone:ddv33k23, 3' ... 1465 0.0 1
(BJ437076) Dictyostelium discoideum cDNA clone:ddv33j03, 3' ... 1465 0.0 1
(BJ406812) Dictyostelium discoideum cDNA clone:dds36d16, 3' ... 1465 0.0 1
(BJ446805) Dictyostelium discoideum cDNA clone:ddv63k21, 3' ... 1463 0.0 1
dna update 2008.11.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB171046_1(AB171046|pid:none) Macaca fascicularis brain cDNA clo... 444 e-123
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 304 4e-81
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 303 1e-80
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 299 1e-79
BC077595_1(BC077595|pid:none) Xenopus laevis translation elongat... 299 2e-79
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 298 3e-79
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 298 4e-79
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 298 4e-79
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 298 4e-79
(P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 298 4e-79
protein update 2009. 7.13
PSORT

psg: 0.71 gvh: 0.39 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHI213 is cyt

5' end seq. ID VHI213F
5' end seq.
>VHI213F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAGGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGNNNNNNNNNN
Length of 5' end seq. 572
3' end seq. ID VHI213Z
3' end seq.
>VHI213Z.Seq
NNNNNNNNNNATCTCATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAA
CCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCCGAAGGTAACGG
TGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTC
TTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAG
AGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGG
TGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCC
AACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGG
TATCTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGG
TTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGC
TGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGC
TTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAA
GAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAAC
AATTTAAGTCGCACTTNAGTTTTCAAANATAGTAATCAAATCTAAAAAAAA
Length of 3' end seq. 771
Connected seq. ID VHI213P
Connected seq.
>VHI213P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAGGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCG----------ATCTCATCCAAAGATGATCCAAAAGCTC
GTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGT
CTTTCGGTCCCGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAAT
ATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTG
TTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACA
CTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATG
CTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTG
CCCCAGAAAACGCTATTGGTGGTATCTACTCTGTACTCAATCGTCGTAGAGGTATTGTTA
TTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTAT
TAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCAC
AATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTG
AAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACA
AATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAGTAATCA
AATCTAAAAAAAA
Length of connected seq. 1323
Full length Seq ID -
Full length Seq. -
Length of full length seq. -