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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI205
Library VH
(Link to library)
Clone ID VHI205
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16531-1
Original site URL
Representative seq. ID VHI205P
(Link to Original site)
Representative DNA sequence 
>VHI205 (VHI205Q) /CSM/VH/VHI2-A/VHI205Q.Seq.d/
TTTTGGTTCAACTTTATCGATGGTAGCATTTTTTAGAGCACTTGGTAATCTTAGTCCATC
ATTGTATGTCAGTCAAAATATATTGAATGTATTTATTCTGTTTATGTTTACCTATGGTGG
TTATTCAATTCCAAAAAATAAGATGCATCCATGGTTTAGTTGGTATTTTTGGATTAATCC
ATTCTCATTCCCCTATAAAGCATTGATGGCAAATGAATTTGGTGATATGAATTTCACATG
TAATGATCAAACTGCAATTCCAAATGGTAATTACATTGCATCTAATGGTAGTACAATGTC
TTATCAAGATCAATATAGAGCTTGTCCATCTGCCGGTGCTATCGAAGGTCAAATGGTTAA
TGGTGAATTTTATGTTGCTGGTTCAAACTATATAGATGCTGCACTTGATTTCAAAAGTGA
TGACCGTACATTAAATGTCATTATCACTTTTTTATGGTGGATATTTTTTGTAATTATCAA
TATGATTGCTTTGGAATTATTCGATTGGACAAGTGGTGGTATGCCTCATAAAGTCTATAA
AAGAGGAAAGGCTCCTAAAATCAACGATGACGAAGAAGAGAGACAACAAAATGCAATGGT
TGAAAATGCTACAAGTAAAATGAAAGXXXXXXXXXXCTTTAAGAAAGATTATGCCTCTAA
ATTTTANTCTTGGTGTCCATTTGCCATNTCAATTGTCATTGTTGAATTACCTTTTGCNGC
AGTCGCTGGAACAATTTGTTTCTTTTGTTCTTTTTGGACAGCAGGTATTTATTACAATGG
TGAATATGATTTTTATTTGTTATATAACTTTCATCCTCTTCCTTTTCATTTGTGTTTCAC
TTGGTCAAGTTGTATCTGCCTTTTGTTTCAATGTTATGTTGGCTCAAACAATTTTACCAC
TTTTATTAGTAATGTTATTTCTTTTTTGTGGAGTACTCGTTCCTTATGAACAAATTCCAA
ACTTTTGGAAATTCGTTTATCATTCAAATCCATGCCGTTATTTCTTAGAAGGTGTTGTAA
CATCAGTTTTAAAGAATGTNTTTGTTGATTGTTCAAATGAAGATTTAACCAAATTCTCAA
ACCCAACAAATTTAACCTGTAAAGAATATTTCAAGCCAACCTATGGAAATGTTCGTGCTG
TTACCAAAGGCGATGAAAGTGAATGTGGTTATTGTGTTTTTAAATCAGGTGAAGAATATT
ATAAAACTCTTGG
sequence update 2002.10.25
Translated Amino Acid sequence 
FGSTLSMVAFFRALGNLSPSLYVSQNILNVFILFMFTYGGYSIPKNKMHPWFSWYFWINP
FSFPYKALMANEFGDMNFTCNDQTAIPNGNYIASNGSTMSYQDQYRACPSAGAIEGQMVN
GEFYVAGSNYIDAALDFKSDDRTLNVIITFLWWIFFVIINMIALELFDWTSGGMPHKVYK
RGKAPKINDDEEERQQNAMVENATSKMK---

---LRKIMPLNFXLGVHLPXQLSLLNYLLXQSLEQFVSFVLFGQQVFITMVNMIFICYIT
FILFLFICVSLGQVVSAFCFNVMLAQTILPLLLVMLFLFCGVLVPYEQIPNFWKFVYHSN
PCRYFLEGVVTSVLKNVFVDCSNEDLTKFSNPTNLTCKEYFKPTYGNVRAVTKGDESECG
YCVFKSGEEYYKTL
Translated Amino Acid sequence (All Frames) 
Frame A:
fwfnfidgsif*stw*s*siivcqskyieciysvyvylwwlfnskk*dasmv*lvfld*s
ilipl*sidgk*iw*yefhm**sncnskw*lhci*w*ynvlsrsi*slsicrcyrrsng*
w*ilccwfklyrcct*fqk**pyikchyhffmvdifcnyqydcfgiirldkwwyas*sl*
krkgs*nqr*rrrettkcng*kcyk*ne---

---l*erlcl*ilxlvsichxnchc*itfcxsrwnnlfllffldsryllqw*i*flfvi*
lssssfsfvfhlvklylpfvsmlcwlkqfyhfy**cyfffveysflmnkfqtfgnsfiiq
ihavis*kvl*hqf*rmxllivqmki*pnsqtqqi*pvknissqpmemfvllpkamkvnv
vivflnqvkniikll

Frame B:
FGSTLSMVAFFRALGNLSPSLYVSQNILNVFILFMFTYGGYSIPKNKMHPWFSWYFWINP
FSFPYKALMANEFGDMNFTCNDQTAIPNGNYIASNGSTMSYQDQYRACPSAGAIEGQMVN
GEFYVAGSNYIDAALDFKSDDRTLNVIITFLWWIFFVIINMIALELFDWTSGGMPHKVYK
RGKAPKINDDEEERQQNAMVENATSKMK---

---fkkdyaskfxswcpfaxsivivelpfaavagticffcsfwtagiyyngeydfyllyn
fhplpfhlcftwsscicllfqcyvgsnnfttfisnvisflwstrsl*tnsklleirlsfk
smplflrrccnisfkecxc*lfk*rfnqilkpnkfnl*rifqanlwkcsccyqrr*k*mw
llcf*ir*ril*nsw

Frame C:
lvqlyrw*hflehlvilvhhcmsvkiy*mylfclclpmvviqfqkircihglvgifglih
shspikh*wqmnlvi*ishvmiklqfqmvitlhlmvvqclikinielvhlpvlskvkwlm
vnfmllvqti*mlhliskvmtvh*mslslfyggyfl*lsi*llwnysigqvvvcliksik
eerllkstmtkkrdnkmqwlkmlqvk*k---

---LRKIMPLNFXLGVHLPXQLSLLNYLLXQSLEQFVSFVLFGQQVFITMVNMIFICYIT
FILFLFICVSLGQVVSAFCFNVMLAQTILPLLLVMLFLFCGVLVPYEQIPNFWKFVYHSN
PCRYFLEGVVTSVLKNVFVDCSNEDLTKFSNPTNLTCKEYFKPTYGNVRAVTKGDESECG
YCVFKSGEEYYKTL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI205 (VHI205Q) /CSM/VH/VHI2-A/VHI205Q.Seq.d/                       2321   0.0
VHM369 (VHM369Q) /CSM/VH/VHM3-C/VHM369Q.Seq.d/                       1170   0.0
VHQ177 (VHQ177Q) /CSM/VH/VHQ1-D/VHQ177Q.Seq.d/                       1168   0.0
VHN306 (VHN306Q) /CSM/VH/VHN3-A/VHN306Q.Seq.d/                       1122   0.0
VHN196 (VHN196Q) /CSM/VH/VHN1-D/VHN196Q.Seq.d/                       1120   0.0
VHO511 (VHO511Q) /CSM/VH/VHO5-A/VHO511Q.Seq.d/                       1096   0.0
VHN812 (VHN812Q) /CSM/VH/VHN8-A/VHN812Q.Seq.d/                       1096   0.0
VHN281 (VHN281Q) /CSM/VH/VHN2-D/VHN281Q.Seq.d/                       1096   0.0
VHL161 (VHL161Q) /CSM/VH/VHL1-C/VHL161Q.Seq.d/                       1096   0.0
VHL107 (VHL107Q) /CSM/VH/VHL1-A/VHL107Q.Seq.d/                       1096   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF482389) Dictyostelium discoideum ABC transporter AbcG10 (...  1239   0.0    1
(BJ422807) Dictyostelium discoideum cDNA clone:ddv47i02, 5' ...  1239   0.0    1
(BJ425411) Dictyostelium discoideum cDNA clone:ddv55j17, 5' ...  1168   0.0    1
(BJ427863) Dictyostelium discoideum cDNA clone:ddv63i19, 5' ...  1166   0.0    1
(BJ426099) Dictyostelium discoideum cDNA clone:ddv57l01, 5' ...  1122   0.0    1
(BJ441563) Dictyostelium discoideum cDNA clone:ddv47i02, 3' ...  1120   0.0    1
(BJ426044) Dictyostelium discoideum cDNA clone:ddv57o23, 5' ...  1116   0.0    1
(BJ424016) Dictyostelium discoideum cDNA clone:ddv51j06, 5' ...  1051   0.0    1
(BJ420136) Dictyostelium discoideum cDNA clone:ddv38i08, 5' ...  1043   0.0    1
(BJ417802) Dictyostelium discoideum cDNA clone:ddv28i21, 5' ...  1043   0.0    1
dna update 2008.11.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF482389_1(AF482389|pid:none) Dictyostelium discoideum ABC trans...   436   e-121
AF482391_1(AF482391|pid:none) Dictyostelium discoideum ABC trans...   251   4e-65
AF482396_1(AF482396|pid:none) Dictyostelium discoideum ABC trans...   251   4e-65
AF482390_1(AF482390|pid:none) Dictyostelium discoideum ABC trans...   216   1e-54
AF482395_1(AF482395|pid:none) Dictyostelium discoideum ABC trans...   199   2e-49
AF037042_1(AF037042|pid:none) Dictyostelium discoideum ras-relat...   119   2e-42
AF482393_1(AF482393|pid:none) Dictyostelium discoideum ABC trans...   173   5e-42
AM270224_3(AM270224|pid:none) Aspergillus niger contig An11c0070...   124   7e-27
AM920427_990(AM920427|pid:none) Penicillium chrysogenum Wisconsi...   114   5e-24
AP007155_113(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   113   1e-23
protein update 2009. 7.13
PSORT 

 psg: 0.96  gvh: 0.62  alm: 0.13  top: 0.57  tms: 0.27  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 32.0 %: plasma membrane
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar

>> prediction for VHI205 is end
5' end seq. ID VHI205F
5' end seq. 
>VHI205F.Seq
TTTTGGTTCAACTTTATCGATGGTAGCATTTTTTAGAGCACTTGGTAATCTTAGTCCATC
ATTGTATGTCAGTCAAAATATATTGAATGTATTTATTCTGTTTATGTTTACCTATGGTGG
TTATTCAATTCCAAAAAATAAGATGCATCCATGGTTTAGTTGGTATTTTTGGATTAATCC
ATTCTCATTCCCCTATAAAGCATTGATGGCAAATGAATTTGGTGATATGAATTTCACATG
TAATGATCAAACTGCAATTCCAAATGGTAATTACATTGCATCTAATGGTAGTACAATGTC
TTATCAAGATCAATATAGAGCTTGTCCATCTGCCGGTGCTATCGAAGGTCAAATGGTTAA
TGGTGAATTTTATGTTGCTGGTTCAAACTATATAGATGCTGCACTTGATTTCAAAAGTGA
TGACCGTACATTAAATGTCATTATCACTTTTTTATGGTGGATATTTTTTGTAATTATCAA
TATGATTGCTTTGGAATTATTCGATTGGACAAGTGGTGGTATGCCTCATAAAGTCTATAA
AAGAGGAAAGGCTCCTAAAATCAACGATGACGAAGAAGAGAGACAACAAAATGCAATGGT
TGAAAATGCTACAAGTAAAATGAAAGNNNNNNNNNN
Length of 5' end seq. 636
3' end seq. ID VHI205Z
3' end seq. 
>VHI205Z.Seq
NNNNNNNNNNCTTTAAGAAAGATTATGCCTCTAAATTTTANTCTTGGTGTCCATTTGCCA
TNTCAATTGTCATTGTTGAATTACCTTTTGCNGCAGTCGCTGGAACAATTTGTTTCTTTT
GTTCTTTTTGGACAGCAGGTATTTATTACAATGGTGAATATGATTTTTATTTGTTATATA
ACTTTCATCCTCTTCCTTTTCATTTGTGTTTCACTTGGTCAAGTTGTATCTGCCTTTTGT
TTCAATGTTATGTTGGCTCAAACAATTTTACCACTTTTATTAGTAATGTTATTTCTTTTT
TGTGGAGTACTCGTTCCTTATGAACAAATTCCAAACTTTTGGAAATTCGTTTATCATTCA
AATCCATGCCGTTATTTCTTAGAAGGTGTTGTAACATCAGTTTTAAAGAATGTNTTTGTT
GATTGTTCAAATGAAGATTTAACCAAATTCTCAAACCCAACAAATTTAACCTGTAAAGAA
TATTTCAAGCCAACCTATGGAAATGTTCGTGCTGTTACCAAAGGCGATGAAAGTGAATGT
GGTTATTGTGTTTTTAAATCAGGTGAAGAATATTATAAAACTCTTGG
Length of 3' end seq. 587
Connected seq. ID VHI205P
Connected seq. 
>VHI205P.Seq
TTTTGGTTCAACTTTATCGATGGTAGCATTTTTTAGAGCACTTGGTAATCTTAGTCCATC
ATTGTATGTCAGTCAAAATATATTGAATGTATTTATTCTGTTTATGTTTACCTATGGTGG
TTATTCAATTCCAAAAAATAAGATGCATCCATGGTTTAGTTGGTATTTTTGGATTAATCC
ATTCTCATTCCCCTATAAAGCATTGATGGCAAATGAATTTGGTGATATGAATTTCACATG
TAATGATCAAACTGCAATTCCAAATGGTAATTACATTGCATCTAATGGTAGTACAATGTC
TTATCAAGATCAATATAGAGCTTGTCCATCTGCCGGTGCTATCGAAGGTCAAATGGTTAA
TGGTGAATTTTATGTTGCTGGTTCAAACTATATAGATGCTGCACTTGATTTCAAAAGTGA
TGACCGTACATTAAATGTCATTATCACTTTTTTATGGTGGATATTTTTTGTAATTATCAA
TATGATTGCTTTGGAATTATTCGATTGGACAAGTGGTGGTATGCCTCATAAAGTCTATAA
AAGAGGAAAGGCTCCTAAAATCAACGATGACGAAGAAGAGAGACAACAAAATGCAATGGT
TGAAAATGCTACAAGTAAAATGAAAG----------CTTTAAGAAAGATTATGCCTCTAA
ATTTTANTCTTGGTGTCCATTTGCCATNTCAATTGTCATTGTTGAATTACCTTTTGCNGC
AGTCGCTGGAACAATTTGTTTCTTTTGTTCTTTTTGGACAGCAGGTATTTATTACAATGG
TGAATATGATTTTTATTTGTTATATAACTTTCATCCTCTTCCTTTTCATTTGTGTTTCAC
TTGGTCAAGTTGTATCTGCCTTTTGTTTCAATGTTATGTTGGCTCAAACAATTTTACCAC
TTTTATTAGTAATGTTATTTCTTTTTTGTGGAGTACTCGTTCCTTATGAACAAATTCCAA
ACTTTTGGAAATTCGTTTATCATTCAAATCCATGCCGTTATTTCTTAGAAGGTGTTGTAA
CATCAGTTTTAAAGAATGTNTTTGTTGATTGTTCAAATGAAGATTTAACCAAATTCTCAA
ACCCAACAAATTTAACCTGTAAAGAATATTTCAAGCCAACCTATGGAAATGTTCGTGCTG
TTACCAAAGGCGATGAAAGTGAATGTGGTTATTGTGTTTTTAAATCAGGTGAAGAATATT
ATAAAACTCTTGG
Length of connected seq. 1203
Full length Seq ID -
Full length Seq. -
Length of full length seq. -