VHI202
Library VH
(Link to library)
Clone ID VHI202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID VHI202P
(Link to Original site)
Representative DNA sequence
>VHI202 (VHI202Q) /CSM/VH/VHI2-A/VHI202Q.Seq.d/
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXCTGGTCAAGGTGCTGTTCA
AACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATT
GTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGA
GGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGA
AGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATAC
TGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATT
TTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGG
TTTTGGTGCTTGG
sequence update 2002.10.25
Translated Amino Acid sequence
isknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---GQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGH
HGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVER
GNPFLAFVGFGAW


Translated Amino Acid sequence (All Frames)
Frame A:
isknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---lvkvlfkplsyswlsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlv
itvknlkwvkslfiksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksn
vvihswlslvlvl

Frame B:
fqkti*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---wsrccsnrslilgshfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhws
sr*ri*ng*slcssshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrt
w*silgfrwfwcl

Frame C:
fkklfkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---GQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGH
HGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVER
GNPFLAFVGFGAW

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ150 (VHQ150Q) /CSM/VH/VHQ1-C/VHQ150Q.Seq.d/ 777 0.0
VHN341 (VHN341Q) /CSM/VH/VHN3-B/VHN341Q.Seq.d/ 777 0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/ 777 0.0
VHI202 (VHI202Q) /CSM/VH/VHI2-A/VHI202Q.Seq.d/ 777 0.0
VHG103 (VHG103Q) /CSM/VH/VHG1-A/VHG103Q.Seq.d/ 777 0.0
VHC159 (VHC159Q) /CSM/VH/VHC1-C/VHC159Q.Seq.d/ 777 0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/ 777 0.0
SHK862 (SHK862Q) /CSM/SH/SHK8-C/SHK862Q.Seq.d/ 777 0.0
SHK817 (SHK817Q) /CSM/SH/SHK8-A/SHK817Q.Seq.d/ 777 0.0
SHK285 (SHK285Q) /CSM/SH/SHK2-D/SHK285Q.Seq.d/ 777 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(U38803) Dictyostelium discoideum vacuolar proton ATPase 100... 777 0.0 1
(BJ446681) Dictyostelium discoideum cDNA clone:ddv63c13, 3' ... 777 0.0 1
(BJ444917) Dictyostelium discoideum cDNA clone:ddv57i24, 3' ... 777 0.0 1
(BJ444719) Dictyostelium discoideum cDNA clone:ddv57b11, 3' ... 777 0.0 1
(BJ441538) Dictyostelium discoideum cDNA clone:ddv47c02, 3' ... 777 0.0 1
(BJ440226) Dictyostelium discoideum cDNA clone:ddv43e01, 3' ... 777 0.0 1
(BJ437839) Dictyostelium discoideum cDNA clone:ddv35e15, 3' ... 777 0.0 1
(BJ409646) Dictyostelium discoideum cDNA clone:dds42e22, 3' ... 777 0.0 1
(BJ408570) Dictyostelium discoideum cDNA clone:dds46c07, 3' ... 777 0.0 1
(BJ408389) Dictyostelium discoideum cDNA clone:dds45l16, 3' ... 777 0.0 1
dna update 2008.11.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ... 266 3e-70
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot... 266 3e-70
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ... 133 3e-30
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso... 130 2e-29
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo... 130 2e-29
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo... 130 2e-29
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo... 130 3e-29
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 128 9e-29
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c... 128 9e-29
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05... 120 2e-26
protein update 2009. 7.13
PSORT

psg: 0.85 gvh: 0.62 alm: 0.18 top: 0.50 tms: 0.07 mit: 0.32 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.19 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: Golgi
16.0 %: mitochondrial
16.0 %: nuclear
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VHI202 is end

5' end seq. ID VHI202F
5' end seq.
>VHI202F.Seq
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 161
3' end seq. ID VHI202Z
3' end seq.
>VHI202Z.Seq
NNNNNNNNNNCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCC
ATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTC
GAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGT
CATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATC
GAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCA
TTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAA
CGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGG
Length of 3' end seq. 402
Connected seq. ID VHI202P
Connected seq.
>VHI202P.Seq
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAA----------CTGGTCAAGGTGCTGTTCA
AACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATT
GTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGA
GGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGA
AGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATAC
TGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATT
TTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGG
TTTTGGTGCTTGG
Length of connected seq. 543
Full length Seq ID -
Full length Seq. -
Length of full length seq. -