VHI193
Library VH
(Link to library)
Clone ID VHI193
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11089-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHI193 (VHI193Q) /CSM/VH/VHI1-D/VHI193Q.Seq.d/
XXXXXXXXXXTCTCATTGAAAAGGATTTAAAATCTGCCGAAGAATATACAAAGAGTGTCA
TTAGTGATCTCTTACAGAATCGTTTAGATCTTTCAATGTTGGTAATTACAAAAGCTCTCT
CAAAAACTCAATACAAAGGAAAGGTAATCCATAATGAATTGGCTAGAAAAATGAGAGCTA
GAGATCCGGCAACAGCTCCAAATTTAGGTGATCGTGTGCCTTATGTGGTCATTCAAGGCT
CAAAGGGTGCACCAATCTATGAGAAAGCTGAAGATCCACTTTATGCTTTGGAACATAATA
TCCTTTTGGATTGTCAATACTATTTGGATAAACAATTGAAAGCACCATTGATTCGTATTT
TCAAACCAATTATGTCAAATCCTGATTTAATTTTCCATGGTGAACATACTAGAACCATTG
CTCAATCAACACTCAGTGATAATAACAAAGGTTTCTTTGGTACTTTGAAAAAGAAAAAAG
TCTGTATGAATTGTCCAAAGGAATTAACTGATACAGAATCTACAACTTGTATAAATTGTC
AACATAAAGAAGCCTCTCTCTATCAAACCTCTTTGGAAAAAGTTACAAGTTTAGAAACTA
AATTCTCTGAAGCTTGGACTCAATGTCAACGTTGTTC
sequence update 2002. 9.10
Translated Amino Acid sequence
---LIEKDLKSAEEYTKSVISDLLQNRLDLSMLVITKALSKTQYKGKVIHNELARKMRAR
DPATAPNLGDRVPYVVIQGSKGAPIYEKAEDPLYALEHNILLDCQYYLDKQLKAPLIRIF
KPIMSNPDLIFHGEHTRTIAQSTLSDNNKGFFGTLKKKKVCMNCPKELTDTESTTCINCQ
HKEASLYQTSLEKVTSLETKFSEAWTQCQRC


Translated Amino Acid sequence (All Frames)
Frame A:
---LIEKDLKSAEEYTKSVISDLLQNRLDLSMLVITKALSKTQYKGKVIHNELARKMRAR
DPATAPNLGDRVPYVVIQGSKGAPIYEKAEDPLYALEHNILLDCQYYLDKQLKAPLIRIF
KPIMSNPDLIFHGEHTRTIAQSTLSDNNKGFFGTLKKKKVCMNCPKELTDTESTTCINCQ
HKEASLYQTSLEKVTSLETKFSEAWTQCQRC


Frame B:
---slkri*nlpkniqrvslvisyriv*ifqcw*lqklsqklntker*simnwlek*ele
irqqlqi*vivclmwsfkaqrvhqsmrklkihfmlwniisfwivntiwinn*khh*fvfs
nqlcqili*fsmvnilepllnqhsviitkvslvl*krkksv*ivqrn*liqnlqlv*ivn
ikkplsikplwkklqv*klnslklglnvnvv


Frame C:
---h*kgfkicrriykech**sltesfrsfnvgnyksslknsiqrkgnp**ig*knes*r
sgnsskfr*scalcghsrlkgctnl*es*rstlcfgt*ypfglsilfg*tiestidsyfq
tnyvks*fnfpw*ty*nhcsintq***qrflwyfekekslyelskgin*yriynlyklst
*rslslsnlfgksykfrn*il*sldsmstlf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI436 (VHI436Q) /CSM/VH/VHI4-B/VHI436Q.Seq.d/ 1172 0.0
VHI193 (VHI193Q) /CSM/VH/VHI1-D/VHI193Q.Seq.d/ 1172 0.0
SHL759 (SHL759Q) /CSM/SH/SHL7-C/SHL759Q.Seq.d/ 1172 0.0
SHJ780 (SHJ780Q) /CSM/SH/SHJ7-D/SHJ780Q.Seq.d/ 1172 0.0
SHD876 (SHD876Q) /CSM/SH/SHD8-D/SHD876Q.Seq.d/ 1172 0.0
SHD311 (SHD311Q) /CSM/SH/SHD3-A/SHD311Q.Seq.d/ 1172 0.0
SHB296 (SHB296Q) /CSM/SH/SHB2-D/SHB296Q.Seq.d/ 1172 0.0
AHM888 (AHM888Q) /CSM/AH/AHM8-D/AHM888Q.Seq.d/ 1172 0.0
AHM863 (AHM863Q) /CSM/AH/AHM8-C/AHM863Q.Seq.d/ 1172 0.0
AHM317 (AHM317Q) /CSM/AH/AHM3-A/AHM317Q.Seq.d/ 1172 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AI615569|AI615569.1 vl18f04.y1 Stratagene mouse Tcell 937311 Mus musculus cDNA clonesequence. 48 0.15 1
AC107007|AC107007.4 Rattus norvegicus clone CH230-202D17, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 46 0.60 1
AC099142|AC099142.5 Rattus norvegicus clone CH230-51G12, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 46 0.60 1
AC104386|AC104386.1 Homo sapiens chromosome 15 clone CTD-2545N7 map 15, LOW-PASS SEQUENCE SAMPLING. 36 1.2 3
BS000059|BS000059.1 Pan troglodytes chromosome 22 clone:RP43-022N17, map 22, complete sequences. 40 1.4 3
AC098994|AC098994.6 Rattus norvegicus clone CH230-152K3, WORKING DRAFT SEQUENCE, 2 unordered pieces. 32 1.7 7
AL929131|AL929131.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-286O17. 40 1.8 3
AP003133|AP003133.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 5/10. 34 2.0 8
AL669891|AL669891.12 Mouse DNA sequence from clone RP23-271F3 on chromosome X. 44 2.4 1
AC105153|AC105153.5 Mus musculus chromosome 17, clone RP24-376L20, complete sequence. 44 2.4 1
dna update 2004. 1.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54N97) RecName: Full=DNA polymerase delta catalytic subunit; ... 421 e-117
AB240141_1(AB240141|pid:none) Chlorella pyrenoidosa polD mRNA fo... 216 3e-55
AE017351_51(AE017351|pid:none) Cryptococcus neoformans var. neof... 208 1e-52
(Q9LRE6) RecName: Full=DNA polymerase delta catalytic subunit; ... 207 2e-52
L07734_1(L07734|pid:none) Schizosaccharomyces pombe DNA polymera... 206 6e-52
(P30316) RecName: Full=DNA polymerase delta catalytic subunit; ... 206 6e-52
S19661(S19661) DNA-directed DNA polymerase (EC 2.7.7.7) III larg... 203 4e-51
AP007162_156(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 202 9e-51
DQ160246_1(DQ160246|pid:none) Arabidopsis thaliana DNA-directed ... 201 1e-50
BC081093_1(BC081093|pid:none) Xenopus laevis polymerase (DNA dir... 199 4e-50
protein update 2009. 7.13
PSORT

psg: 0.75 gvh: 0.54 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for VHI193 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHI193Z
3' end seq.
>VHI193Z.Seq
NNNNNNNNNNTCTCATTGAAAAGGATTTAAAATCTGCCGAAGAATATACAAAGAGTGTCA
TTAGTGATCTCTTACAGAATCGTTTAGATCTTTCAATGTTGGTAATTACAAAAGCTCTCT
CAAAAACTCAATACAAAGGAAAGGTAATCCATAATGAATTGGCTAGAAAAATGAGAGCTA
GAGATCCGGCAACAGCTCCAAATTTAGGTGATCGTGTGCCTTATGTGGTCATTCAAGGCT
CAAAGGGTGCACCAATCTATGAGAAAGCTGAAGATCCACTTTATGCTTTGGAACATAATA
TCCTTTTGGATTGTCAATACTATTTGGATAAACAATTGAAAGCACCATTGATTCGTATTT
TCAAACCAATTATGTCAAATCCTGATTTAATTTTCCATGGTGAACATACTAGAACCATTG
CTCAATCAACACTCAGTGATAATAACAAAGGTTTCTTTGGTACTTTGAAAAAGAAAAAAG
TCTGTATGAATTGTCCAAAGGAATTAACTGATACAGAATCTACAACTTGTATAAATTGTC
AACATAAAGAAGCCTCTCTCTATCAAACCTCTTTGGAAAAAGTTACAAGTTTAGAAACTA
AATTCTCTGAAGCTTGGACTCAATGTCAACGTTGTTC
Length of 3' end seq. 637
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -