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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI189
Library VH
(Link to library)
Clone ID VHI189
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16303-1
Original site URL
Representative seq. ID VHI189P
(Link to Original site)
Representative DNA sequence 
>VHI189 (VHI189Q) /CSM/VH/VHI1-D/VHI189Q.Seq.d/
TGGAAATATCAAAAAAAAAANCTCAAAAAATAATAGAGTATNCCCAATTTATTATTATTN
GATCATTGTAATTATATTATAAATTTATACTCATTTATNGGTTTGATTGNGTNCATATAA
AANGTTATTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATAATAAT
AAAATATATTTTAAAAAAAAAATAAAANTAAAATAAAAATNTTNGTCCNTAATAAAATCT
NCNACAATAATAATAGTTAAAATAATAAAANGTCANATCAAATANCAGTTGATGAGTTAT
GGNCAAAANGNGANCAANCTTTCAAAAATNTTTTCCTCANTTTGAAAAANGGTTTATCAA
NAAANCGTTNTNTGGANATTTATNCCAAAATATNCAATTNTXXXXXXXXXXGACACTTAC
AAATAAACAAACAGCAACTCCATTCAAACCACCAAGTGAAATGTTATCAAGTATTACATA
TTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTCCTTTACGATTT
TTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAACTTACAACTAC
AGCATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATTACTAGATTCCT
TATTAATGATACAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTATTAGCTTTAAT
CAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAACAACGATACTGA
ATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGTAATATTGCTGT
TCAAAATTGGTGAAACTAAACAATCAGAAGGTCAACAAACTGTCAGCGAACAAGAAATTG
AAAAAGAACGTTTCTTCAAACTTCAAGCTGCCATTGTACGTATTATGAAATCTAAAAAGA
CAATGACTCACAATGATCTCACTGTGGAAACTACCACTCAAGTCAGCAAATGGTTCACAC
CAAAGATCNCTGCCATTAAAAAGGCGATCGAATACCTCATCGACCAAGAATACATTAGAA
GAACTA
sequence update 2002.10.25
Translated Amino Acid sequence 
eiskkkxqkiieyxqfiiixsl*lyykfiliyxfdxvhikxy*ink******xqy*****
nif*kknkxkikxxvxnkixxnnns*NNKXSXQIXVDELWXKXXQXFKNXFLXLKXGLSX
XRXXXIYXKIXNX---

---TLTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKI
YKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFKN
WNNDTEFTVNSKFSSKKMKVSCNIAVQNW*n*tirrstncqrtrn*krtflqtsschcty
yei*kdndsq*shcgnyhssqqmvhtkdxch*kgdriphrprih*kn
Translated Amino Acid sequence (All Frames) 
Frame A:
wkyqkkxlkk**sxpnlllxdhcnyiinlysfxglixxi*xvik*innnnnnnxninnnn
kiyfkkkikxk*kxxsxiksxtiiivkiikxxikxqlmsygqxxxxlskxfssx*kxvyq
xxvxwxfxpkyxi---

---dtyk*tnsnsiqttk*nvikyyifriflqkklpr*sfnfplrffks*c*lktsqrkn
i*tynysipngnfinv*wsr*dy*ipy**ynwfr*ninsssiisfnqnryy*vfrtklqe
leqry*ihckf*iqfkedegql*yccsklvklnnqkvnklsankklkknvssnfklplyv
l*nlkrq*ltmislwklplksangshqrslplkrrsntsstkntleel

Frame B:
gnikkkxsknnrvxpiyyyxiiviil*iythlxv*lxxykxllnk*iiiiiiixiliiii
kyilkkk*x*nknxxp**nlxq***lk**xvxsnxs**vmxkxxxxfqkxfpxfekxfix
kxxxgxlxqnxqx---

---TLTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKI
YKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFKN
WNNDTEFTVNSKFSSKKMKVSCNIAVQNW*n*tirrstncqrtrn*krtflqtsschcty
yei*kdndsq*shcgnyhssqqmvhtkdxch*kgdriphrprih*kn

Frame C:
eiskkkxqkiieyxqfiiixsl*lyykfiliyxfdxvhikxy*ink******xqy*****
nif*kknkxkikxxvxnkixxnnns*NNKXSXQIXVDELWXKXXQXFKNXFLXLKXGLSX
XRXXXIYXKIXNX---

---hlqinkqqlhsnhqvkcyqvlhisnlstkkvtkvef*lsftifqelmltqdkpkeky
inlqlqhtkwqfy*clmeqirlldsllmiqlv*mkhqfvfhy*l*skqvllsvqnqasri
gttilnsl*ilnsvqrr*rsavillfkigetkqsegqqtvseqeiekerffklqaaivri
mkskktmthndltvetttqvskwftpkixaikkaieylidqeyirrt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI189 (VHI189Q) /CSM/VH/VHI1-D/VHI189Q.Seq.d/                       1402   0.0
VHP693 (VHP693Q) /CSM/VH/VHP6-D/VHP693Q.Seq.d/                       1368   0.0
VHO776 (VHO776Q) /CSM/VH/VHO7-D/VHO776Q.Seq.d/                       1283   0.0
VHD741 (VHD741Q) /CSM/VH/VHD7-B/VHD741Q.Seq.d/                       1279   0.0
VHP636 (VHP636Q) /CSM/VH/VHP6-B/VHP636Q.Seq.d/                       1275   0.0
VHP488 (VHP488Q) /CSM/VH/VHP4-D/VHP488Q.Seq.d/                       1275   0.0
VHN548 (VHN548Q) /CSM/VH/VHN5-B/VHN548Q.Seq.d/                       1275   0.0
VHM669 (VHM669Q) /CSM/VH/VHM6-C/VHM669Q.Seq.d/                       1275   0.0
VHM661 (VHM661Q) /CSM/VH/VHM6-C/VHM661Q.Seq.d/                       1275   0.0
VHK869 (VHK869Q) /CSM/VH/VHK8-C/VHK869Q.Seq.d/                       1275   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441751) Dictyostelium discoideum cDNA clone:ddv47a23, 3' ...  1150   0.0    2
(BJ445850) Dictyostelium discoideum cDNA clone:ddv60h19, 3' ...  1142   0.0    2
(BJ438714) Dictyostelium discoideum cDNA clone:ddv38b11, 3' ...  1138   0.0    2
(BJ445105) Dictyostelium discoideum cDNA clone:ddv58o11, 3' ...  1134   0.0    2
(BJ405179) Dictyostelium discoideum cDNA clone:dds30h22, 3' ...  1134   0.0    2
(BJ442967) Dictyostelium discoideum cDNA clone:ddv51b14, 3' ...  1118   0.0    1
(BJ438035) Dictyostelium discoideum cDNA clone:ddv36l03, 3' ...  1118   0.0    4
(BJ442873) Dictyostelium discoideum cDNA clone:ddv51p05, 3' ...  1114   0.0    2
(BJ445334) Dictyostelium discoideum cDNA clone:ddv59m01, 3' ...  1092   0.0    1
(BJ439553) Dictyostelium discoideum cDNA clone:ddv40g22, 3' ...  1092   0.0    2
dna update 2008.11.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU633897_277(CU633897|pid:none) Podospora anserina genomic DNA c...    71   3e-25
AE017356_115(AE017356|pid:none) Cryptococcus neoformans var. neo...    76   7e-25
FB802359_1(FB802359|pid:none) Sequence 21632 from Patent WO20080...    72   1e-24
AK072402_1(AK072402|pid:none) Oryza sativa Japonica Group cDNA c...    71   2e-24
AL606454_2(AL606454|pid:none) Oryza sativa genomic DNA, chromoso...    72   2e-24
FB802423_1(FB802423|pid:none) Sequence 21696 from Patent WO20080...    70   8e-24
AE014134_3634(AE014134|pid:none) Drosophila melanogaster chromos...    67   1e-23
FB802477_1(FB802477|pid:none) Sequence 21750 from Patent WO20080...    72   1e-23
BT069454_1(BT069454|pid:none) Zea mays full-length cDNA clone ZM...    72   1e-23
AM484063_2(AM484063|pid:none) Vitis vinifera contig VV78X066416....    72   3e-23
protein update 2009. 7.13
PSORT 

 psg: 0.58  gvh: 0.57  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for VHI189 is cyt
5' end seq. ID VHI189F
5' end seq. 
>VHI189F.Seq
TGGAAATATCAAAAAAAAAANCTCAAAAAATAATAGAGTATNCCCAATTTATTATTATTN
GATCATTGTAATTATATTATAAATTTATACTCATTTATNGGTTTGATTGNGTNCATATAA
AANGTTATTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATAATAAT
AAAATATATTTTAAAAAAAAAATAAAANTAAAATAAAAATNTTNGTCCNTAATAAAATCT
NCNACAATAATAATAGTTAAAATAATAAAANGTCANATCAAATANCAGTTGATGAGTTAT
GGNCAAAANGNGANCAANCTTTCAAAAATNTTTTCCTCANTTTGAAAAANGGTTTATCAA
NAAANCGTTNTNTGGANATTTATNCCAAAATATNCAATTNTNNNNNNNNNN
Length of 5' end seq. 411
3' end seq. ID VHI189Z
3' end seq. 
>VHI189Z.Seq
NNNNNNNNNNGACACTTACAAATAAACAAACAGCAACTCCATTCAAACCACCAAGTGAAA
TGTTATCAAGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTT
TAACTTTCCTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAA
TATATAAACTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAG
ATAAGATTACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATTCGTC
TTCCATTATTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGA
ATTGGAACAACGATACTGAATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGG
TCAGCTGTAATATTGCTGTTCAAAATTGGTGAAACTAAACAATCAGAAGGTCAACAAACT
GTCAGCGAACAAGAAATTGAAAAAGAACGTTTCTTCAAACTTCAAGCTGCCATTGTACGT
ATTATGAAATCTAAAAAGACAATGACTCACAATGATCTCACTGTGGAAACTACCACTCAA
GTCAGCAAATGGTTCACACCAAAGATCNCTGCCATTAAAAAGGCGATCGAATACCTCATC
GACCAAGAATACATTAGAAGAACTA
Length of 3' end seq. 685
Connected seq. ID VHI189P
Connected seq. 
>VHI189P.Seq
TGGAAATATCAAAAAAAAAANCTCAAAAAATAATAGAGTATNCCCAATTTATTATTATTN
GATCATTGTAATTATATTATAAATTTATACTCATTTATNGGTTTGATTGNGTNCATATAA
AANGTTATTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATAATAAT
AAAATATATTTTAAAAAAAAAATAAAANTAAAATAAAAATNTTNGTCCNTAATAAAATCT
NCNACAATAATAATAGTTAAAATAATAAAANGTCANATCAAATANCAGTTGATGAGTTAT
GGNCAAAANGNGANCAANCTTTCAAAAATNTTTTCCTCANTTTGAAAAANGGTTTATCAA
NAAANCGTTNTNTGGANATTTATNCCAAAATATNCAATTNT----------GACACTTAC
AAATAAACAAACAGCAACTCCATTCAAACCACCAAGTGAAATGTTATCAAGTATTACATA
TTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTCCTTTACGATTT
TTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAACTTACAACTAC
AGCATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATTACTAGATTCCT
TATTAATGATACAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTATTAGCTTTAAT
CAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAACAACGATACTGA
ATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGTAATATTGCTGT
TCAAAATTGGTGAAACTAAACAATCAGAAGGTCAACAAACTGTCAGCGAACAAGAAATTG
AAAAAGAACGTTTCTTCAAACTTCAAGCTGCCATTGTACGTATTATGAAATCTAAAAAGA
CAATGACTCACAATGATCTCACTGTGGAAACTACCACTCAAGTCAGCAAATGGTTCACAC
CAAAGATCNCTGCCATTAAAAAGGCGATCGAATACCTCATCGACCAAGAATACATTAGAA
GAACTA
Length of connected seq. 1076
Full length Seq ID -
Full length Seq. -
Length of full length seq. -