VHI186
Library VH
(Link to library)
Clone ID VHI186
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12382-1
Original site URL
Representative seq. ID VHI186P
(Link to Original site)
Representative DNA sequence
>VHI186 (VHI186Q) /CSM/VH/VHI1-D/VHI186Q.Seq.d/
ATTTTATTATTATTTAAAAATAAAAAAAAATGAAAATTATTTTAATATTATCAATTTTTT
TAATATGTTTTTTACAACTTGGACAATCAGTTATTGATCCATCTCAAAATGAGGTCATGT
CAGATTTACTATTTAATTTGTACGGTTATGATAAGAGTCTAGATCCATGTAACAATAATT
ATGTTGAGTGTGAATATATCAATACAACAAGTACCATTCAAACTGTTAAATCTTTGTCTT
TAGGTGCTCCCTTACATCAATATGTAATCACTCAAGATTTAACTCCACTCCAAAATTTAA
CCAGTTTTGAAGTAAATGAAAAAATTTATTTAACTTCATCCTTTTTTAATTATATTAATA
AATTCTCTCAACTTGAAAGAATAGTTACATATTCTCTTAATCTAACAATTCCAGATGATA
CAATTTTCCCAGCAATTTTTGAAACATTTACTATTTATAAACCTTCAGTTCCATTAAGTA
AAGTAATTTTTGAATCACCTATTAAAAACTTATATGTTGATTCCCCTTTAACTGGTTACA
GTATTCCAACTTTAGTAAATGTCAATCCATATCTTGGAAACCTTCAACTTCCAGTAACTT
ACXXXXXXXXXXGGAATTAGACGGTCATAAATATTTCACAATAAATGGTACTGGTTTCGA
TTTTGTGGATTCAAATAACATCACTATTAATGATCAACAAATTACATTTGATAATGCAAT
GGGAGGAGGTGATAATGATGGTTTGATAATATTCCCTATTGATGAATTACCAAATTTTGC
TACTGAGAGTAAATTTACAGTATCTGCACTTGTAGGAGGTCAAAGTTCAAATGAAGTTAC
ATTTTATTATTTCAACTCAATCAATATTACTGAAGAGAAATTAGTTTTAAATAATACAGG
TGGTTCAGTAAATATTAATGGTTCATTTGGTACTAATAATACATCATTAGTTTCAGTCTC
AATCAATGGTACCAATTGTTTAGTTACATCATACACAAACTCAAAATTAACAATTACATA
TCCATCAAATCAAGTTGGAGATAATTATGTTTTAACTTTGAATGTTGGTGGTTATGCAGT
TAATCTTGTTGTTGAATACATTGAAGGCGGTGAAACTCCAACACCATCAACAACACCATC
AACAACACCATCAACAACTCCAAGTTCAACACCAACCCAATCACCTGATGATGATGGATC
AACATCTTCAACACTATCAACATCTTTTTATTTGATTACCTTGTTATTTTTAATTCAACA
ATTTATTTAAAATGGATTTTAAGNGTAATAAAAGGAA
sequence update 2002.10.25
Translated Amino Acid sequence
fiii*k*KKMKIILILSIFLICFLQLGQSVIDPSQNEVMSDLLFNLYGYDKSLDPCNNNY
VECEYINTTSTIQTVKSLSLGAPLHQYVITQDLTPLQNLTSFEVNEKIYLTSSFFNYINK
FSQLERIVTYSLNLTIPDDTIFPAIFETFTIYKPSVPLSKVIFESPIKNLYVDSPLTGYS
IPTLVNVNPYLGNLQLPVTY---

---ELDGHKYFTINGTGFDFVDSNNITINDQQITFDNAMGGGDNDGLIIFPIDELPNFAT
ESKFTVSALVGGQSSNEVTFYYFNSINITEEKLVLNNTGGSVNINGSFGTNNTSLVSVSI
NGTNCLVTSYTNSKLTITYPSNQVGDNYVLTLNVGGYAVNLVVEYIEGGETPTPSTTPST
TPSTTPSSTPTQSPDDDGSTSSTLSTSFYLITLLFLIQQFI*ngf*x**ke


Translated Amino Acid sequence (All Frames)
Frame A:
illlfknkkk*klf*yyqff*yvfynldnqllihlkmrscqiyylictvmirv*ihvtii
mlsvnisiqqvpfkllnlcl*vlpyinm*slki*lhski*pvlk*mkkfi*lhpfliili
nslnlke*lhilli*qfqmiqfsqqflkhllfinlqfh*vk*flnhllktymlipl*lvt
vfql**msihiletfnfq*l---

---girrs*ifhnkwywfrfcgfk*hhy**stnyi**cngrr***wfdnipy**itkfcy
*e*iysictcrrskfk*syillfqlnqyy*reisfk*yrwfsky*wfiwy**yiisfsln
qwyqlfsyiihklkinnyisiksswr*lcfnfecwwlcs*scc*ih*rr*nsntinntin
ntinnskfntnpit***winifntiniflfdylvifnstiylkwilxvikg

Frame B:
fyyylkikknenyfniinffnmffttwtisy*sisk*ghvrfti*fvrl**esrsm*q*l
c*v*iyqynkyhsnc*ifvfrcsltsicnhsrfnstpkfnqf*sk*knlfnfilf*ly**
ilst*knsyifs*snnsr*ynfpsnf*niyyl*tfssik*snf*ity*klic*fpfnwlq
ysnfskcqsiswkpstssnl---

---ELDGHKYFTINGTGFDFVDSNNITINDQQITFDNAMGGGDNDGLIIFPIDELPNFAT
ESKFTVSALVGGQSSNEVTFYYFNSINITEEKLVLNNTGGSVNINGSFGTNNTSLVSVSI
NGTNCLVTSYTNSKLTITYPSNQVGDNYVLTLNVGGYAVNLVVEYIEGGETPTPSTTPST
TPSTTPSSTPTQSPDDDGSTSSTLSTSFYLITLLFLIQQFI*ngf*x**ke

Frame C:
fiii*k*KKMKIILILSIFLICFLQLGQSVIDPSQNEVMSDLLFNLYGYDKSLDPCNNNY
VECEYINTTSTIQTVKSLSLGAPLHQYVITQDLTPLQNLTSFEVNEKIYLTSSFFNYINK
FSQLERIVTYSLNLTIPDDTIFPAIFETFTIYKPSVPLSKVIFESPIKNLYVDSPLTGYS
IPTLVNVNPYLGNLQLPVTY---

---n*tvinisq*mvlvsilwiqitsllminklhlimqweevimmv**ysllmnyqilll
rvnlqylhl*evkvqmklhfiistqsillkrn*f*iiqvvq*ilmvhlvliihh*fqsqs
mvpiv*lhhtqtqn*qlhihqikleiimf*l*mlvvmqlilllntlkavklqhhqqhhqq
hhqqlqvqhqpnhlmmmdqhlqhyqhlfi*lpcyf*fnnlfkmdfkxnkr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI186 (VHI186Q) /CSM/VH/VHI1-D/VHI186Q.Seq.d/ 2052 0.0
VHQ342 (VHQ342Q) /CSM/VH/VHQ3-B/VHQ342Q.Seq.d/ 1092 0.0
VHK850 (VHK850Q) /CSM/VH/VHK8-C/VHK850Q.Seq.d/ 1092 0.0
VHB517 (VHB517Q) /CSM/VH/VHB5-A/VHB517Q.Seq.d/ 1092 0.0
VHO234 (VHO234Q) /CSM/VH/VHO2-B/VHO234Q.Seq.d/ 1086 0.0
VHC239 (VHC239Q) /CSM/VH/VHC2-B/VHC239Q.Seq.d/ 1084 0.0
VHC617 (VHC617Q) /CSM/VH/VHC6-A/VHC617Q.Seq.d/ 1082 0.0
VHA550 (VHA550Q) /CSM/VH/VHA5-C/VHA550Q.Seq.d/ 1082 0.0
VHN125 (VHN125Q) /CSM/VH/VHN1-B/VHN125Q.Seq.d/ 1051 0.0
VHB707 (VHB707Q) /CSM/VH/VHB7-A/VHB707Q.Seq.d/ 1043 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427693) Dictyostelium discoideum cDNA clone:ddv63d11, 5' ... 1072 0.0 3
(BJ426510) Dictyostelium discoideum cDNA clone:ddv59c10, 5' ... 1072 0.0 2
(BJ424468) Dictyostelium discoideum cDNA clone:ddv52d14, 5' ... 1072 0.0 3
(BJ423043) Dictyostelium discoideum cDNA clone:ddv47k21, 5' ... 1072 0.0 3
(BJ418782) Dictyostelium discoideum cDNA clone:ddv34a05, 5' ... 1072 0.0 3
(BJ418364) Dictyostelium discoideum cDNA clone:ddv32c13, 5' ... 1072 0.0 2
(BJ419399) Dictyostelium discoideum cDNA clone:ddv36a06, 5' ... 1070 0.0 3
(BJ419224) Dictyostelium discoideum cDNA clone:ddv35m10, 5' ... 1065 0.0 3
(BJ425828) Dictyostelium discoideum cDNA clone:ddv57a07, 5' ... 1031 0.0 3
(BJ418836) Dictyostelium discoideum cDNA clone:ddv34n01, 5' ... 1023 0.0 3
dna update 2008.11.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ... 295 2e-78
AC116957_137(AC116957|pid:none) Dictyostelium discoideum chromos... 98 7e-19
AC115599_1(AC115599|pid:none) Dictyostelium discoideum chromosom... 69 5e-10
AC116984_79(AC116984|pid:none) Dictyostelium discoideum chromoso... 46 0.003
CP001173_849(CP001173|pid:none) Helicobacter pylori G27, complet... 43 0.028
CP000102_1351(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 42 0.063
CP000102_881(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 42 0.063
AL844504_308(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.54
CP000246_198(CP000246|pid:none) Clostridium perfringens ATCC 131... 39 0.54
CP001217_912(CP001217|pid:none) Helicobacter pylori P12, complet... 39 0.54
protein update 2009. 7.13
PSORT

psg: 0.99 gvh: 0.76 alm: 0.35 top: 0.07 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: extracellular, including cell wall
16.0 %: cytoplasmic
12.0 %: vacuolar
12.0 %: endoplasmic reticulum
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: nuclear

>> prediction for VHI186 is exc

5' end seq. ID VHI186F
5' end seq.
>VHI186F.Seq
ATTTTATTATTATTTAAAAATAAAAAAAAATGAAAATTATTTTAATATTATCAATTTTTT
TAATATGTTTTTTACAACTTGGACAATCAGTTATTGATCCATCTCAAAATGAGGTCATGT
CAGATTTACTATTTAATTTGTACGGTTATGATAAGAGTCTAGATCCATGTAACAATAATT
ATGTTGAGTGTGAATATATCAATACAACAAGTACCATTCAAACTGTTAAATCTTTGTCTT
TAGGTGCTCCCTTACATCAATATGTAATCACTCAAGATTTAACTCCACTCCAAAATTTAA
CCAGTTTTGAAGTAAATGAAAAAATTTATTTAACTTCATCCTTTTTTAATTATATTAATA
AATTCTCTCAACTTGAAAGAATAGTTACATATTCTCTTAATCTAACAATTCCAGATGATA
CAATTTTCCCAGCAATTTTTGAAACATTTACTATTTATAAACCTTCAGTTCCATTAAGTA
AAGTAATTTTTGAATCACCTATTAAAAACTTATATGTTGATTCCCCTTTAACTGGTTACA
GTATTCCAACTTTAGTAAATGTCAATCCATATCTTGGAAACCTTCAACTTCCAGTAACTT
ACNNNNNNNNNN
Length of 5' end seq. 612
3' end seq. ID VHI186Z
3' end seq.
>VHI186Z.Seq
NNNNNNNNNNGGAATTAGACGGTCATAAATATTTCACAATAAATGGTACTGGTTTCGATT
TTGTGGATTCAAATAACATCACTATTAATGATCAACAAATTACATTTGATAATGCAATGG
GAGGAGGTGATAATGATGGTTTGATAATATTCCCTATTGATGAATTACCAAATTTTGCTA
CTGAGAGTAAATTTACAGTATCTGCACTTGTAGGAGGTCAAAGTTCAAATGAAGTTACAT
TTTATTATTTCAACTCAATCAATATTACTGAAGAGAAATTAGTTTTAAATAATACAGGTG
GTTCAGTAAATATTAATGGTTCATTTGGTACTAATAATACATCATTAGTTTCAGTCTCAA
TCAATGGTACCAATTGTTTAGTTACATCATACACAAACTCAAAATTAACAATTACATATC
CATCAAATCAAGTTGGAGATAATTATGTTTTAACTTTGAATGTTGGTGGTTATGCAGTTA
ATCTTGTTGTTGAATACATTGAAGGCGGTGAAACTCCAACACCATCAACAACACCATCAA
CAACACCATCAACAACTCCAAGTTCAACACCAACCCAATCACCTGATGATGATGGATCAA
CATCTTCAACACTATCAACATCTTTTTATTTGATTACCTTGTTATTTTTAATTCAACAAT
TTATTTAAAATGGATTTTAAGNGTAATAAAAGGAA
Length of 3' end seq. 695
Connected seq. ID VHI186P
Connected seq.
>VHI186P.Seq
ATTTTATTATTATTTAAAAATAAAAAAAAATGAAAATTATTTTAATATTATCAATTTTTT
TAATATGTTTTTTACAACTTGGACAATCAGTTATTGATCCATCTCAAAATGAGGTCATGT
CAGATTTACTATTTAATTTGTACGGTTATGATAAGAGTCTAGATCCATGTAACAATAATT
ATGTTGAGTGTGAATATATCAATACAACAAGTACCATTCAAACTGTTAAATCTTTGTCTT
TAGGTGCTCCCTTACATCAATATGTAATCACTCAAGATTTAACTCCACTCCAAAATTTAA
CCAGTTTTGAAGTAAATGAAAAAATTTATTTAACTTCATCCTTTTTTAATTATATTAATA
AATTCTCTCAACTTGAAAGAATAGTTACATATTCTCTTAATCTAACAATTCCAGATGATA
CAATTTTCCCAGCAATTTTTGAAACATTTACTATTTATAAACCTTCAGTTCCATTAAGTA
AAGTAATTTTTGAATCACCTATTAAAAACTTATATGTTGATTCCCCTTTAACTGGTTACA
GTATTCCAACTTTAGTAAATGTCAATCCATATCTTGGAAACCTTCAACTTCCAGTAACTT
AC----------GGAATTAGACGGTCATAAATATTTCACAATAAATGGTACTGGTTTCGA
TTTTGTGGATTCAAATAACATCACTATTAATGATCAACAAATTACATTTGATAATGCAAT
GGGAGGAGGTGATAATGATGGTTTGATAATATTCCCTATTGATGAATTACCAAATTTTGC
TACTGAGAGTAAATTTACAGTATCTGCACTTGTAGGAGGTCAAAGTTCAAATGAAGTTAC
ATTTTATTATTTCAACTCAATCAATATTACTGAAGAGAAATTAGTTTTAAATAATACAGG
TGGTTCAGTAAATATTAATGGTTCATTTGGTACTAATAATACATCATTAGTTTCAGTCTC
AATCAATGGTACCAATTGTTTAGTTACATCATACACAAACTCAAAATTAACAATTACATA
TCCATCAAATCAAGTTGGAGATAATTATGTTTTAACTTTGAATGTTGGTGGTTATGCAGT
TAATCTTGTTGTTGAATACATTGAAGGCGGTGAAACTCCAACACCATCAACAACACCATC
AACAACACCATCAACAACTCCAAGTTCAACACCAACCCAATCACCTGATGATGATGGATC
AACATCTTCAACACTATCAACATCTTTTTATTTGATTACCTTGTTATTTTTAATTCAACA
ATTTATTTAAAATGGATTTTAAGNGTAATAAAAGGAA
Length of connected seq. 1287
Full length Seq ID -
Full length Seq. -
Length of full length seq. -