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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI167
Library VH
(Link to library)
Clone ID VHI167
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14941-1
Original site URL
Representative seq. ID VHI167P
(Link to Original site)
Representative DNA sequence 
>VHI167 (VHI167Q) /CSM/VH/VHI1-C/VHI167Q.Seq.d/
CATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATT
CACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTC
CTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATATACATTAAAAGAAATGTCAA
CAGAAGAAGATCAAAAATTATTCCTTTCAATTGGATTAGATGAAAAGAGAGCAAAAGATA
CTTTAAAAAATAAAGATCTTACTGCATTATTAAAAACCATTATTGAAGAAGCATCCGTTT
CAAAAGGTTGTGATAAATCAATTGGTAACCTTTTATATAGTTTAGCAACTTGTCAACAAG
TAAACTCACCAATTCGTTCAAACGTTTCAAAAGCAATTGGTGAAGAAAAAATTAAAACCA
CCATTCAATTCCAAGCTGCAACTCAATACTTAAAAGATAACAAAGAATTCAATCAAGATA
CATTTAACGATTTTTGTGGTGTTGGTGTTGTCATCACACCAGAACAAATTCAAAAAGCTA
TTGATGATTTATTCACTAAAAAAGCTACTGAAATTTCTGAAAAAAAATGGCATATACCAA
TTGGTGATTTAXXXXXXXXXXCACTCAAAGTTATCGTGCTGAAAAGGCTCGTATTCGTCG
TCATTNAACCGAGTTTTTACATTTGGAAGCTGAATGTCCATTCATCACNTACGAGGAACT
TCAAGATCGTATCGAATTCTTGGTTGTCGATGTTTGTGAAAAACTCTTCAAAATGGACCC
AGAATTGATCCTCTCTGTCAATCCAGACTTTAAAGTACCAAAGAGACCATTCATGAGAAT
GAACTATTCCGATGCTATCGAATATTGTAAAAAGAATGGTATCCAAAAGAAACTTGAAGA
TGGTACTGAAGTCGATTTCGAATTTGGTGATGATATTCCAGAGGCTCAAGAAAGAAGAAT
GAATGATCAAATCGGTGAACCAATCTTCCTCTGTAGATTCCCTGCTGAAATGAAAGCTTT
CTACATGGCTAGATGTCCAGAAGATAGAACTCTCACTGAATCTCTTGATCTCTTAATGCC
AGGTGTTGGTGAAATCGTTGGTGGTTCTATGAGAATTTCAGATTTCAATGAATTGGTTGC
AGCTTATAAAAAAGCTGGTCTTGATACTGATGAATATTATTGGTTCACTGATCAACGTAA
ATATGGTACTACTCAACATGGTGGTTATGGTTTAGGTGTTGAACGTTTCCTTACTTGGAT
GCTCAAAGAAGAACATATTCGTAATGTTTGTGTTTACCAACGTACAAAAGATAGAATTAC
CCCATAAAATATTTTTTGATTTTAATTTCTCAATTCTAAAATCATTTTGATCAAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
*tvntstpksmktvancdnslelqptgivemlnahddigpfglgvilg*EWSYTLKEMST
EEDQKLFLSIGLDEKRAKDTLKNKDLTALLKTIIEEASVSKGCDKSIGNLLYSLATCQQV
NSPIRSNVSKAIGEEKIKTTIQFQAATQYLKDNKEFNQDTFNDFCGVGVVITPEQIQKAI
DDLFTKKATEISEKKWHIPIGDL---

---TQSYRAEKARIRRHXTEFLHLEAECPFITYEELQDRIEFLVVDVCEKLFKMDPELIL
SVNPDFKVPKRPFMRMNYSDAIEYCKKNGIQKKLEDGTEVDFEFGDDIPEAQERRMNDQI
GEPIFLCRFPAEMKAFYMARCPEDRTLTESLDLLMPGVGEIVGGSMRISDFNELVAAYKK
AGLDTDEYYWFTDQRKYGTTQHGGYGLGVERFLTWMLKEEHIRNVCVYQRTKDRITP*ni
f*f*flnskiilik*
Translated Amino Acid sequence (All Frames) 
Frame A:
hkr*iprllnr*rp*qtaiihlncsllg*lkc*thmmtsvlsd*vlylgesghih*kkcq
qkkiknysfqld*mkreqkil*kikillhy*kpllkkhpfqkvvinqlvtfyiv*qlvnk
*thqfvqtfqkqlvkkklkppfnsklqlnt*kitknsikihltifvvlvlsshqnkfkkl
lmiyslkkllkflkkngiyqlvi---

---hsklsc*kgsysssxnrvftfgs*msihhxrgtsrsyrilgcrcl*ktlqngpridp
lcqsrl*stketihenelfrcyril*kewypket*rwy*srfriw**ysrgsrkkne*sn
r*tnlpl*ipc*nesflhg*msrr*nsh*is*slnarcw*nrwwfyenfrfq*igcsl*k
sws*y**illvh*st*iwyystwwlwfrc*tfpyldaqrrtys*clclptykr*nypiky
flilisqf*nhfdqi

Frame B:
ingeylds*idedrsklr*ft*iaaywds*nvert**hrsfrircytwvrvviyikrnvn
rrrskiipfnwir*keskryfkk*rsyciiknhy*rsirfkrl**inw*pfi*fsnlsts
kltnsfkrfksnw*rkn*nhhsipscnsilkr*qriqsryi*rflwcwcchhtrtnsksy
**fih*ksy*nf*kkmaytnw*f---

---TQSYRAEKARIRRHXTEFLHLEAECPFITYEELQDRIEFLVVDVCEKLFKMDPELIL
SVNPDFKVPKRPFMRMNYSDAIEYCKKNGIQKKLEDGTEVDFEFGDDIPEAQERRMNDQI
GEPIFLCRFPAEMKAFYMARCPEDRTLTESLDLLMPGVGEIVGGSMRISDFNELVAAYKK
AGLDTDEYYWFTDQRKYGTTQHGGYGLGVERFLTWMLKEEHIRNVCVYQRTKDRITP*ni
f*f*flnskiilik*

Frame C:
*tvntstpksmktvancdnslelqptgivemlnahddigpfglgvilg*EWSYTLKEMST
EEDQKLFLSIGLDEKRAKDTLKNKDLTALLKTIIEEASVSKGCDKSIGNLLYSLATCQQV
NSPIRSNVSKAIGEEKIKTTIQFQAATQYLKDNKEFNQDTFNDFCGVGVVITPEQIQKAI
DDLFTKKATEISEKKWHIPIGDL---

---lkvivlkrlvfvvixpsfyiwklnvhssxtrnfkivsnswlsmfvknsskwtqn*ss
lsiqtlkyqrdhs*e*tipmlsnivkrmvskrnlkmvlksisnlvmifqrlkkee*miks
vnqsssvdsllk*klstwldvqkielslnllis*cqvlvkslvvl*efqismnwlqlikk
lvlilmniigslinvnmvllnmvvmv*vlnvsllgcskknifvmfvftnvqkielphkif
fdfnfsilksf*snk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI167 (VHI167Q) /CSM/VH/VHI1-C/VHI167Q.Seq.d/                       2615   0.0
VHC801 (VHC801Q) /CSM/VH/VHC8-A/VHC801Q.Seq.d/                       1469   0.0
VHC634 (VHC634Q) /CSM/VH/VHC6-B/VHC634Q.Seq.d/                       1469   0.0
SFE837 (SFE837Q) /CSM/SF/SFE8-B/SFE837Q.Seq.d/                       1469   0.0
VHB335 (VHB335Q) /CSM/VH/VHB3-B/VHB335Q.Seq.d/                       1431   0.0
SFK826 (SFK826Q) /CSM/SF/SFK8-B/SFK826Q.Seq.d/                       1423   0.0
SFF879 (SFF879Q) /CSM/SF/SFF8-D/SFF879Q.Seq.d/                       1417   0.0
SLE204 (SLE204Q) /CSM/SL/SLE2-A/SLE204Q.Seq.d/                       1407   0.0
VHM212 (VHM212Q) /CSM/VH/VHM2-A/VHM212Q.Seq.d/                       1390   0.0
VHO452 (VHO452Q) /CSM/VH/VHO4-C/VHO452Q.Seq.d/                       1364   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441698) Dictyostelium discoideum cDNA clone:ddv47e17, 3' ...  1491   0.0    1
(BJ397954) Dictyostelium discoideum cDNA clone:dds10j10, 3' ...  1469   0.0    1
(BJ438068) Dictyostelium discoideum cDNA clone:ddv36c10, 3' ...  1463   0.0    1
(BJ437983) Dictyostelium discoideum cDNA clone:ddv36b02, 3' ...  1400   0.0    2
(BJ444055) Dictyostelium discoideum cDNA clone:ddv55g04, 3' ...  1380   0.0    1
(BJ401141) Dictyostelium discoideum cDNA clone:dds22d08, 3' ...  1374   0.0    2
(BJ445480) Dictyostelium discoideum cDNA clone:ddv59h14, 3' ...  1364   0.0    1
(BJ398560) Dictyostelium discoideum cDNA clone:dds12n20, 3' ...  1364   0.0    2
(BJ376633) Dictyostelium discoideum cDNA clone:ddc29g09, 3' ...  1316   0.0    2
(BJ438835) Dictyostelium discoideum cDNA clone:ddv38j16, 3' ...  1314   0.0    1
dna update 2008.11.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_93(AC116305|pid:none) Dictyostelium discoideum chromoso...   480   e-134
(O43776) RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic;...   296   1e-78
AK297777_1(AK297777|pid:none) Homo sapiens cDNA FLJ52703 complet...   296   1e-78
(Q8BP47) RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic;...   295   2e-78
AK077699_1(AK077699|pid:none) Mus musculus 8 days embryo whole b...   295   2e-78
AY387099_1(AY387099|pid:none) Rattus norvegicus LRRGT00113 mRNA,...   295   3e-78
BC099099_1(BC099099|pid:none) Rattus norvegicus asparaginyl-tRNA...   295   3e-78
(Q4R4Z1) RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic;...   295   3e-78
AK222835_1(AK222835|pid:none) Homo sapiens mRNA for asparaginyl-...   295   3e-78
AE014134_3150(AE014134|pid:none) Drosophila melanogaster chromos...   293   1e-77
protein update 2009. 7.13
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHI167 is cyt
5' end seq. ID VHI167F
5' end seq. 
>VHI167F.Seq
CATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATT
CACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTC
CTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATATACATTAAAAGAAATGTCAA
CAGAAGAAGATCAAAAATTATTCCTTTCAATTGGATTAGATGAAAAGAGAGCAAAAGATA
CTTTAAAAAATAAAGATCTTACTGCATTATTAAAAACCATTATTGAAGAAGCATCCGTTT
CAAAAGGTTGTGATAAATCAATTGGTAACCTTTTATATAGTTTAGCAACTTGTCAACAAG
TAAACTCACCAATTCGTTCAAACGTTTCAAAAGCAATTGGTGAAGAAAAAATTAAAACCA
CCATTCAATTCCAAGCTGCAACTCAATACTTAAAAGATAACAAAGAATTCAATCAAGATA
CATTTAACGATTTTTGTGGTGTTGGTGTTGTCATCACACCAGAACAAATTCAAAAAGCTA
TTGATGATTTATTCACTAAAAAAGCTACTGAAATTTCTGAAAAAAAATGGCATATACCAA
TTGGTGATTTANNNNNNNNNN
Length of 5' end seq. 621
3' end seq. ID VHI167Z
3' end seq. 
>VHI167Z.Seq
NNNNNNNNNNCACTCAAAGTTATCGTGCTGAAAAGGCTCGTATTCGTCGTCATTNAACCG
AGTTTTTACATTTGGAAGCTGAATGTCCATTCATCACNTACGAGGAACTTCAAGATCGTA
TCGAATTCTTGGTTGTCGATGTTTGTGAAAAACTCTTCAAAATGGACCCAGAATTGATCC
TCTCTGTCAATCCAGACTTTAAAGTACCAAAGAGACCATTCATGAGAATGAACTATTCCG
ATGCTATCGAATATTGTAAAAAGAATGGTATCCAAAAGAAACTTGAAGATGGTACTGAAG
TCGATTTCGAATTTGGTGATGATATTCCAGAGGCTCAAGAAAGAAGAATGAATGATCAAA
TCGGTGAACCAATCTTCCTCTGTAGATTCCCTGCTGAAATGAAAGCTTTCTACATGGCTA
GATGTCCAGAAGATAGAACTCTCACTGAATCTCTTGATCTCTTAATGCCAGGTGTTGGTG
AAATCGTTGGTGGTTCTATGAGAATTTCAGATTTCAATGAATTGGTTGCAGCTTATAAAA
AAGCTGGTCTTGATACTGATGAATATTATTGGTTCACTGATCAACGTAAATATGGTACTA
CTCAACATGGTGGTTATGGTTTAGGTGTTGAACGTTTCCTTACTTGGATGCTCAAAGAAG
AACATATTCGTAATGTTTGTGTTTACCAACGTACAAAAGATAGAATTACCCCATAAAATA
TTTTTTGATTTTAATTTCTCAATTCTAAAATCATTTTGATCAAATAAA
Length of 3' end seq. 768
Connected seq. ID VHI167P
Connected seq. 
>VHI167P.Seq
CATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATT
CACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTC
CTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATATACATTAAAAGAAATGTCAA
CAGAAGAAGATCAAAAATTATTCCTTTCAATTGGATTAGATGAAAAGAGAGCAAAAGATA
CTTTAAAAAATAAAGATCTTACTGCATTATTAAAAACCATTATTGAAGAAGCATCCGTTT
CAAAAGGTTGTGATAAATCAATTGGTAACCTTTTATATAGTTTAGCAACTTGTCAACAAG
TAAACTCACCAATTCGTTCAAACGTTTCAAAAGCAATTGGTGAAGAAAAAATTAAAACCA
CCATTCAATTCCAAGCTGCAACTCAATACTTAAAAGATAACAAAGAATTCAATCAAGATA
CATTTAACGATTTTTGTGGTGTTGGTGTTGTCATCACACCAGAACAAATTCAAAAAGCTA
TTGATGATTTATTCACTAAAAAAGCTACTGAAATTTCTGAAAAAAAATGGCATATACCAA
TTGGTGATTTA----------CACTCAAAGTTATCGTGCTGAAAAGGCTCGTATTCGTCG
TCATTNAACCGAGTTTTTACATTTGGAAGCTGAATGTCCATTCATCACNTACGAGGAACT
TCAAGATCGTATCGAATTCTTGGTTGTCGATGTTTGTGAAAAACTCTTCAAAATGGACCC
AGAATTGATCCTCTCTGTCAATCCAGACTTTAAAGTACCAAAGAGACCATTCATGAGAAT
GAACTATTCCGATGCTATCGAATATTGTAAAAAGAATGGTATCCAAAAGAAACTTGAAGA
TGGTACTGAAGTCGATTTCGAATTTGGTGATGATATTCCAGAGGCTCAAGAAAGAAGAAT
GAATGATCAAATCGGTGAACCAATCTTCCTCTGTAGATTCCCTGCTGAAATGAAAGCTTT
CTACATGGCTAGATGTCCAGAAGATAGAACTCTCACTGAATCTCTTGATCTCTTAATGCC
AGGTGTTGGTGAAATCGTTGGTGGTTCTATGAGAATTTCAGATTTCAATGAATTGGTTGC
AGCTTATAAAAAAGCTGGTCTTGATACTGATGAATATTATTGGTTCACTGATCAACGTAA
ATATGGTACTACTCAACATGGTGGTTATGGTTTAGGTGTTGAACGTTTCCTTACTTGGAT
GCTCAAAGAAGAACATATTCGTAATGTTTGTGTTTACCAACGTACAAAAGATAGAATTAC
CCCATAAAATATTTTTTGATTTTAATTTCTCAATTCTAAAATCATTTTGATCAAATAAA
Length of connected seq. 1369
Full length Seq ID -
Full length Seq. -
Length of full length seq. -