AFO215
Library AF
(Link to library)
Clone ID AFO215
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16513-1
Original site URL
Representative seq. ID AFO215E
(Link to Original site)
Representative DNA sequence
>AFO215 (AFO215Q) /CSM/AF/AFO2-A/AFO215Q.Seq.d/
ATTTATTAATAATACATCCACAAAGAATGAAAATATTATTATTTGTTACATTAATTGCAT
TGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTTGTTTTATCACCAGACAACT
TTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGCACCATGGTGTG
GCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATTCGCACCAGTTT
CCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAAAGCTCTCTGTA
GTAAATATGATGTTTCTGGTTATCCAACCCTCAAAATCTTTGACAAATCAACCACTGCCA
AAGATTACAACGGTGCTAGATCAGTTGATGAATTATTAACTTATATCAATAATCACGCCA
AAACCAACGTTAAAGTAAAGAAAGCACCATCAAATGTTGTTGATTTATCACCATCAAATT
TTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACCATGGT
GTGGTCATTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACCTACGCCAATG
AAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGCT
CCAAATATGGTGTCACTGGTTTCCCAACACTCAAATGGTTCGGTAAACAAAGCAAAGACG
GTGAAAAATATGAACAAGGTCGTGATCTTGATACTTTCATCAACTACATCAACAAACAAG
CTGGTGTTAACCGTGTCAAAGGTGGTAAACTCGCTGTTGGTGCTGGTCGTGTTGAACAAC
TCGATACTATTGCCACTGAATTCATCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTCA
AGAAAGCTCAAACCGTCGTTGATTCTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACT
ACGTCAAAGTCATGAAAACCATTGCTGAAAAATCAATCGATTTTGTAACCACTGAAATCG
CTCGTATCACCAAATTAGTCTCTGGTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCA
AGAAACTCAATATTTTAGATNCTTCAAATCAAAATAAATTAAA
sequence update 2001. 6. 9
Translated Amino Acid sequence
LLIIHPQRMKILLFVTLIALAFVALCSAEGNVVVLSPDNFDTVVDGSKTVFVKFYAPWCG
HCKKLAPDFEILADTFAPVSNKVVIAKVDCDQADNKALCSKYDVSGYPTLKIFDKSTTAK
DYNGARSVDELLTYINNHAKTNVKVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAPWC
GHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDG
EKYEQGRDLDTFINYINKQAGVNRVKGGKLAVGAGRVEQLDTIATEFIAAAAEVRKELVK
KAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAK
KLNILDXSNQNKL


Translated Amino Acid sequence (All Frames)
Frame A:
iy**yihke*kyyyllh*lhwhllpyaqqkemllfyhqttliqllmvqklyl*nsmhhgv
aivknlhqilksllthshqfptkl*lpklivtklttklsvvnmmflviqpsksltnqplp
kittvldqlmny*lisiitpkptlk*rkhhqmlliyhhqiliqlf*inqrmf*lnsmhhg
vviaks*cqimkslvtptpmkkmlsspkliamllitkpsapnmvslvsqhsngsvnkakt
vknmnkvvililssttstnklvltvskvvnsllvlvvlnnsillplnsslpllksvrnss
rklkpslilsqkn*elkvhttsks*kpllknqsil*plkslvspn*slvqclerklmnlp
rnsif*xlqikin*


Frame B:
finntstkneniiicyincigicclmlsrrkcccfitrql*ysc*wfkncickilctmvw
pl*ktctrf*npc*hirtsfqqscncqs*l*ps*qqssl**i*cfwlsnpqnl*qinhcq
rlqrc*is**iinlyq*srqnqr*skestikcc*fitikf*fscfr*ikecfs*ilctmv
wslqkvnarl*npw*hlrq*krcchrqn*lrcc**qshllqiwchwfpntqmvr*tkqrr
*ki*trs*s*yfhqlhqqtswc*pcqrw*trcwcwsc*ttryych*ihrcrc*sp*gtrq
essnrr*fsprrikn*rfilrqshenhc*kinrfcnh*nrsyhqislwfnvwkes**icq
etqyfrxfksk*ik


Frame C:
LLIIHPQRMKILLFVTLIALAFVALCSAEGNVVVLSPDNFDTVVDGSKTVFVKFYAPWCG
HCKKLAPDFEILADTFAPVSNKVVIAKVDCDQADNKALCSKYDVSGYPTLKIFDKSTTAK
DYNGARSVDELLTYINNHAKTNVKVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAPWC
GHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDG
EKYEQGRDLDTFINYINKQAGVNRVKGGKLAVGAGRVEQLDTIATEFIAAAAEVRKELVK
KAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAK
KLNILDXSNQNKL


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO215 (AFO215Q) /CSM/AF/AFO2-A/AFO215Q.Seq.d/ 2220 0.0
VFM578 (VFM578Q) /CSM/VF/VFM5-D/VFM578Q.Seq.d/ 2198 0.0
VFL370 (VFL370Q) /CSM/VF/VFL3-C/VFL370Q.Seq.d/ 2198 0.0
VFI769 (VFI769Q) /CSM/VF/VFI7-C/VFI769Q.Seq.d/ 2198 0.0
VFG408 (VFG408Q) /CSM/VF/VFG4-A/VFG408Q.Seq.d/ 2198 0.0
VFF762 (VFF762Q) /CSM/VF/VFF7-C/VFF762Q.Seq.d/ 2198 0.0
VFF615 (VFF615Q) /CSM/VF/VFF6-A/VFF615Q.Seq.d/ 2198 0.0
VFD309 (VFD309Q) /CSM/VF/VFD3-A/VFD309Q.Seq.d/ 2198 0.0
SFK776 (SFK776Q) /CSM/SF/SFK7-D/SFK776Q.Seq.d/ 2198 0.0
SFI534 (SFI534Q) /CSM/SF/SFI5-B/SFI534Q.Seq.d/ 2198 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF019112|AF019112.1 Dictyostelium discoideum protein disulfide isomerase (dis) mRNA, complete cds. 2161 0.0 3
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 1457 0.0 8
BX252003|BX252003.1 Pinus pinaster xylem EST, clone PP058D07. 54 2e-19 4
BQ695627|BQ695627.1 NXPV_030_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_030_G06 5', mRNA sequence. 58 2e-19 3
AU299541|AU299541.1 Cryptomeria japonica mRNA, clone: CM1065, 5' end, expressed in male cone. 62 3e-13 2
AK113243|AK113243.1 Ciona intestinalis cDNA, clone:ciad019c19, full insert sequence. 54 3e-13 5
CB090389|CB090389.1 gy74e10.g1 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone gy74e10, mRNA sequence. 80 9e-13 2
CF508720|CF508720.1 USDA-FP_124000-223 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-70_B02 5', mRNA sequence. 68 3e-12 2
CF509886|CF509886.1 USDA-FP_125000-394 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_F01 5', mRNA sequence. 68 3e-12 2
BE208912|BE208912.1 GF-FV-P3F1 Marsh grapefruit young flavedo Citrus x paradisi cDNA, mRNA sequence. 68 4e-12 2
dna update 2003. 9.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86IA3) RecName: Full=Protein disulfide-isomerase 1; S... 687 0.0
AF019112_1(AF019112|pid:none) Dictyostelium discoideum protein d... 685 0.0
EF086125_1(EF086125|pid:none) Picea sitchensis clone WS0285_I21 ... 310 8e-83
DQ222488_1(DQ222488|pid:none) Solanum tuberosum clone 098B03 dis... 301 3e-80
AY730725_1(AY730725|pid:none) Entamoeba histolytica protein disu... 299 1e-79
AB182629_1(AB182629|pid:none) Glycine max Gm pdis-1a mRNA for pr... 297 5e-79
(O22263) RecName: Full=Probable protein disulfide-isomerase A6; ... 296 9e-79
AC087425_4(AC087425|pid:none) Oryza sativa (japonica cultivar-gr... 294 3e-78
T03644(T03644) probable protein disulfide-isomerase (EC 5.3.4.1)... 293 7e-78
EU284948_1(EU284948|pid:none) TSA: Elaeis guineensis EgEfMPOB001... 292 1e-77
protein update 2009. 6.29
PSORT

psg: 0.98 gvh: 0.77 alm: 0.45 top: 0.10 tms: 0.00 mit: 0.34 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: vacuolar
12.0 %: endoplasmic reticulum
8.0 %: nuclear
4.0 %: mitochondrial

>> prediction for AFO215 is exc

5' end seq. ID AFO215F
5' end seq.
>AFO215F.Seq
ATTTATTAATAATACATCCACAAAGAATGAAAATATTATTATTTGTTACATTAATTGCAT
TGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTTGTTTTATCACCAGACAACT
TTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGCACCATGGTGTG
GCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATTCGCACCAGTTT
CCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAAAGCTCTCTGTA
GTAAATATGATGTTTCTGGTTATCCAACCCTCAAAATCTTTGACAAATCAACCACTGCCA
AAGATTACAACGGTGCTAGATCAGTTGATGAATTATTAACTTATATCAATAATCACGCCA
AAACCAACGTTAAAGTAAAGAAAGCACCATCAAATGTTGTTGATTTATCACCATCAAATT
TTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACCATGGT
GTGGTCATTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACCTACGCCAATG
AAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGCT
CCAAATATGGTGTCACTGGTTTCCCAACACTCAAA----------
Length of 5' end seq. 695
3' end seq. ID AFO215Z
3' end seq.
>AFO215Z.Seq
----------TTATCACCATCAAATTTTGATTCAGTTGTTTTAGATAAATCAAAGAATGT
TTTAGTTGAATTCTATGCACCATGGTGTGGTCATTGCAAAAAGTTAATGCCAGATTATGA
AATCCTTGGTAACACCTACGCCAATGAAAAAGATGTTGTCATCGCCAAAATTGATTGCGA
TGCTGCTGATAACAAAGCCATCTGCTCCAAATATGGTGTCACTGGTTTCCCAACACTCAA
ATGGTTCGGTAAACAAAGCAAAGACGGTGAAAAATATGAACAAGGTCGTGATCTTGATAC
TTTCATCAACTACATCAACAAACAAGCTGGTGTTAACCGTGTCAAAGGTGGTAAACTCGC
TGTTGGTGCTGGTCGTGTTGAACAACTCGATACTATTGCCACTGAATTCATCGCTGCCGC
TGCTGAAGTCCGTAAGGAACTCGTCAAGAAAGCTCAAACCGTCGTTGATTCTCTCCCAGA
AGAATTAAGAACTGAAGGTTCATACTACGTCAAAGTCATGAAAACCATTGCTGAAAAATC
AATCGATTTTGTAACCACTGAAATCGCTCGTATCACCAAATTAGTCTCTGGTTCAATGTC
TGGAAAGAAAGCTGATGAATTTGCCAAGAAACTCAATATTTTAGATNCTTCAAATCAAAA
TAAATTAAA
Length of 3' end seq. 659
Connected seq. ID AFO215P
Connected seq.
>AFO215P.Seq
ATTTATTAATAATACATCCACAAAGAATGAAAATATTATTATTTGTTACATTAATTGCAT
TGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTTGTTTTATCACCAGACAACT
TTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGCACCATGGTGTG
GCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATTCGCACCAGTTT
CCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAAAGCTCTCTGTA
GTAAATATGATGTTTCTGGTTATCCAACCCTCAAAATCTTTGACAAATCAACCACTGCCA
AAGATTACAACGGTGCTAGATCAGTTGATGAATTATTAACTTATATCAATAATCACGCCA
AAACCAACGTTAAAGTAAAGAAAGCACCATCAAATGTTGTTGATTTATCACCATCAAATT
TTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACCATGGT
GTGGTCATTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACCTACGCCAATG
AAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGCT
CCAAATATGGTGTCACTGGTTTCCCAACACTCAAA----------TTATCACCATCAAAT
TTTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACCATGG
TGTGGTCATTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACCTACGCCAAT
GAAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGC
TCCAAATATGGTGTCACTGGTTTCCCAACACTCAAATGGTTCGGTAAACAAAGCAAAGAC
GGTGAAAAATATGAACAAGGTCGTGATCTTGATACTTTCATCAACTACATCAACAAACAA
GCTGGTGTTAACCGTGTCAAAGGTGGTAAACTCGCTGTTGGTGCTGGTCGTGTTGAACAA
CTCGATACTATTGCCACTGAATTCATCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTC
AAGAAAGCTCAAACCGTCGTTGATTCTCTCCCAGAAGAATTAAGAACTGAAGGTTCATAC
TACGTCAAAGTCATGAAAACCATTGCTGAAAAATCAATCGATTTTGTAACCACTGAAATC
GCTCGTATCACCAAATTAGTCTCTGGTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCC
AAGAAACTCAATATTTTAGATNCTTCAAATCAAAATAAATTAAA
Length of connected seq. 1354
Full length Seq ID AFO215E
Full length Seq.
>AFO215E.Seq
ATTTATTAATAATACATCCACAAAGAATGAAAATATTATTATTTGTTACATTAATTGCAT
TGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTTGTTTTATCACCAGACAACT
TTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGCACCATGGTGTG
GCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATTCGCACCAGTTT
CCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAAAGCTCTCTGTA
GTAAATATGATGTTTCTGGTTATCCAACCCTCAAAATCTTTGACAAATCAACCACTGCCA
AAGATTACAACGGTGCTAGATCAGTTGATGAATTATTAACTTATATCAATAATCACGCCA
AAACCAACGTTAAAGTAAAGAAAGCACCATCAAATGTTGTTGATTTATCACCATCAAATT
TTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACCATGGT
GTGGTCATTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACCTACGCCAATG
AAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGCT
CCAAATATGGTGTCACTGGTTTCCCAACACTCAAATGGTTCGGTAAACAAAGCAAAGACG
GTGAAAAATATGAACAAGGTCGTGATCTTGATACTTTCATCAACTACATCAACAAACAAG
CTGGTGTTAACCGTGTCAAAGGTGGTAAACTCGCTGTTGGTGCTGGTCGTGTTGAACAAC
TCGATACTATTGCCACTGAATTCATCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTCA
AGAAAGCTCAAACCGTCGTTGATTCTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACT
ACGTCAAAGTCATGAAAACCATTGCTGAAAAATCAATCGATTTTGTAACCACTGAAATCG
CTCGTATCACCAAATTAGTCTCTGGTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCA
AGAAACTCAATATTTTAGATNCTTCAAATCAAAATAAATTAAA
Length of full length seq. 1123