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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI141
Library VH
(Link to library)
Clone ID VHI141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15722-1
Original site URL
Representative seq. ID VHI141P
(Link to Original site)
Representative DNA sequence 
>VHI141 (VHI141Q) /CSM/VH/VHI1-B/VHI141Q.Seq.d/
AATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAA
ATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAA
GTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTCTTACAAAC
AAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACTTGTAATTA
TACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCATTCAACTGT
TCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGA
CGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGCAAAAGATA
TACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGT
TGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTATTTACGTAC
AGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAATGTGAAAAG
TGGTTGGTGTACTTGTGATGGTAATXXXXXXXXXXCCAAATGGTACTTGTGATAATAANA
CTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTTACTCGATGTC
CACTCGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCC
ATAATGAACATTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTCGACAC
CAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTA
ATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATA
TTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAAT
TTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTA
ATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTG
AATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAA
ATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTAT
TCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAA
TCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAA
CAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTG
CTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTAATC
TTTTCTTCTAAAAACTAAAATAAAATTTAACCATTAGGGTTTTTTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
i*kk*rkkhtkik*VRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQT
NGGIGFLYSYLSVIFTTCNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHSYSKD
GLMITYISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLYLRT
VCQTCPNCLKTHQTSCNVKSGWCTCDGN---

---PNGTCDNXTGNCTCHNEHFGNGCEFTRCPLDCSTPNGTCDNNTGNCTCHNEHFGNSC
EFTRCPLDCSTPNGTCDNNTGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSGICTCD
NEHIGNGCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSINSK
GGTINIIGYFGNTTSLLTIKIGESQCKNIKVFNETTLKCDIGEGKGIHNITIIDDDLSFT
AINKFQYLDEKTKISKISRGAIAGIVVGCVVAVSLIGSIAFYYHHKNKKVNLFF*klk*n
ltirvfy
Translated Amino Acid sequence (All Frames) 
Frame A:
nlkkikekthqn*isknkneifisifthitilfikdq*pkvlhl*wcwrrl*yqi*cltn
kwwywfsilifkcyfynl*lyyslw*****civwiisfncstqvsfigic*wqyt*l*qr
rtndniyitgynk***lqkiynkcdfsm*trw*cirfircwhrqyty*fmyc*ihtlfty
svsnmsklfkntsnim*cekwlvyl*w*---

---PNGTCDNXTGNCTCHNEHFGNGCEFTRCPLDCSTPNGTCDNNTGNCTCHNEHFGNSC
EFTRCPLDCSTPNGTCDNNTGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSGICTCD
NEHIGNGCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSINSK
GGTINIIGYFGNTTSLLTIKIGESQCKNIKVFNETTLKCDIGEGKGIHNITIIDDDLSFT
AINKFQYLDEKTKISKISRGAIAGIVVGCVVAVSLIGSIAFYYHHKNKKVNLFF*klk*n
ltirvfy

Frame B:
i*kk*rkkhtkik*VRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQT
NGGIGFLYSYLSVIFTTCNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHSYSKD
GLMITYISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLYLRT
VCQTCPNCLKTHQTSCNVKSGWCTCDGN---

---qmvlviixlvivhaimnilvmvvnlldvhsivrhqmvlviiilvivhaimnilvilv
nlldvhsivrhqmvlviiilvivhaimnilvmvvnslnahsivqhqmvlvilivvfvhvi
mnilvmvaklnllnvninvqpnmeyvimivvivnvilkqkd*rvknqdy*lnh*tqsiqk
vvq*i*lvileiqhhy*qlklvnhnvkiskysmkqh*nvilvkvkvfiilqslmmtfrsq
qsissnismkkqksqkyrevqllvlllvvlllfh*lvlllfiiitkikrlifsskn*nki
*plgff

Frame C:
fkknkgkntpklnk*e*k*niy*yiytyyyfvy*rsiaksialivvlekiiisnlmsykq
mvvlvfythi*vlflqlviilflvvvivimycvdhiiqlfhasifhwdllmavhiviakt
d***hiyhriqqmimiakdiqqm*ffnvdqmvmypih*mlastiyllihvllnshsiyvq
cvkhvqtv*khikhhvm*kvvgvlvmv---

---kwyl***xw*lymp**tfw*wl*iysmstrlfdtkwyl***yw*lymp**tfw*fl*
iysmstrlfdtkwyl***yw*lymp**tfw*wl*ihsmptllfntkwyl*y**wylym**
*tyw*wlrn*iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikiin*iirlnqfkr
wynkynwlfwkyniiinn*nw*itm*kyqsiq*nnikm*yw*r*rys*yynh***pfvhs
nq*vpisr*knknlkniercncwyccwlccccfinwfycfllssqk*kg*sfllktkikf
nh*gfl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI141 (VHI141Q) /CSM/VH/VHI1-B/VHI141Q.Seq.d/                       2537   0.0
VHP265 (VHP265Q) /CSM/VH/VHP2-C/VHP265Q.Seq.d/                       1449   0.0
VHH671 (VHH671Q) /CSM/VH/VHH6-C/VHH671Q.Seq.d/                       1447   0.0
VHA893 (VHA893Q) /CSM/VH/VHA8-D/VHA893Q.Seq.d/                       1447   0.0
VHK192 (VHK192Q) /CSM/VH/VHK1-D/VHK192Q.Seq.d/                       1431   0.0
VHO766 (VHO766Q) /CSM/VH/VHO7-C/VHO766Q.Seq.d/                       1429   0.0
VHQ143 (VHQ143Q) /CSM/VH/VHQ1-B/VHQ143Q.Seq.d/                       1427   0.0
VHH831 (VHH831Q) /CSM/VH/VHH8-B/VHH831Q.Seq.d/                       1413   0.0
AHH863 (AHH863Q) /CSM/AH/AHH8-C/AHH863Q.Seq.d/                       1413   0.0
FC-BE20 (FC-BE20Q) /CSM/FC/FC-BE/FC-BE20Q.Seq.d/                     1411   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441604) Dictyostelium discoideum cDNA clone:ddv47a11, 3' ...  1459   0.0    2
(BJ446052) Dictyostelium discoideum cDNA clone:ddv61a18, 3' ...  1449   0.0    2
(BJ441429) Dictyostelium discoideum cDNA clone:ddv46m18, 3' ...  1447   0.0    2
(BJ437001) Dictyostelium discoideum cDNA clone:ddv32j24, 3' ...  1447   0.0    2
(BJ443076) Dictyostelium discoideum cDNA clone:ddv51g23, 3' ...  1431   0.0    2
(BJ445753) Dictyostelium discoideum cDNA clone:ddv60d17, 3' ...  1429   0.0    2
(AU284609) Dictyostelium discoideum gamete cDNA clone:FC-BE2...  1411   0.0    2
(BJ438586) Dictyostelium discoideum cDNA clone:ddv37j10, 3' ...  1394   0.0    2
(BJ446619) Dictyostelium discoideum cDNA clone:ddv63e11, 3' ...  1386   0.0    3
(BJ444126) Dictyostelium discoideum cDNA clone:ddv55h07, 3' ...  1382   0.0    2
dna update 2008.11.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...   125   3e-27
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...   109   5e-23
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...   111   8e-23
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...   108   4e-22
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...   108   5e-22
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...   103   2e-20
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...   101   8e-20
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...    95   6e-18
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    90   2e-16
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    89   6e-16
protein update 2009. 7.13
PSORT 

 psg: 0.93  gvh: 0.70  alm: 0.19  top: 0.40  tms: 0.07  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.77  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for VHI141 is pla
5' end seq. ID VHI141F
5' end seq. 
>VHI141F.Seq
AATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAA
ATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAA
GTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTCTTACAAAC
AAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACTTGTAATTA
TACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCATTCAACTGT
TCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGA
CGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGCAAAAGATA
TACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGT
TGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTATTTACGTAC
AGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAATGTGAAAAG
TGGTTGGTGTACTTGTGATGGTAATNNNNNNNNNN
Length of 5' end seq. 635
3' end seq. ID VHI141Z
3' end seq. 
>VHI141Z.Seq
NNNNNNNNNNCCAAATGGTACTTGTGATAATAANACTGGTAATTGTACATGCCATAATGA
ACATTTTGGTAATGGTTGTGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGG
TACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATTCTTG
TGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGGTACTTGTGATAATAATAC
TGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTCACTCAATGCCC
ACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATAGTGGTATTTGTACATGTGA
TAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATTGAATGTAAACATAAATGTTC
AACCAAACATGGAATATGTGATAATGATAGTGGTAATTGTAAATGTGATACTCAAACAAA
AGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCATTAGACTCAATCAATTCAAA
AGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACAACATCATTATTAACAATTAA
AATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAATGAAACAACATTAAAATGTGA
TATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTGATGATGACCTTTCGTTCAC
AGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAAATCTCAAAAATATCGAGAGG
TGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTTTCATTAATTGGTTCTATTGC
TTTTTATTATCATCACAAAAATAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAATAAAA
TTTAACCATTAGGGTTTTTTAT
Length of 3' end seq. 922
Connected seq. ID VHI141P
Connected seq. 
>VHI141P.Seq
AATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAA
ATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAA
GTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTCTTACAAAC
AAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACTTGTAATTA
TACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCATTCAACTGT
TCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGA
CGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGCAAAAGATA
TACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGT
TGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTATTTACGTAC
AGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAATGTGAAAAG
TGGTTGGTGTACTTGTGATGGTAAT----------CCAAATGGTACTTGTGATAATAANA
CTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTTACTCGATGTC
CACTCGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCC
ATAATGAACATTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTCGACAC
CAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTA
ATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATA
TTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAAT
TTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTA
ATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTG
AATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAA
ATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTAT
TCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAA
TCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAA
CAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTG
CTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTAATC
TTTTCTTCTAAAAACTAAAATAAAATTTAACCATTAGGGTTTTTTAT
Length of connected seq. 1537
Full length Seq ID -
Full length Seq. -
Length of full length seq. -