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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHI109
Library VH
(Link to library)
Clone ID VHI109
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15722-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHI109 (VHI109Q) /CSM/VH/VHI1-A/VHI109Q.Seq.d/
AAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATA
AAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAAT
AGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTC
TTACAAACAAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACT
TGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCAT
TCAACTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTAT
AGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGC
AAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTCA
TTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTAT
TTACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAAT
GTGAAAAGTGGTTGGTGTACTTGTGATGGTAATACXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
kisi*kk*rkkhtkik*VRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDV
LQTNGGIGFLYSYLSVIFTTCNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHSY
SKDGLMITYISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLY
LRTVCQTCPNCLKTHQTSCNVKSGWCTCDGN---
Translated Amino Acid sequence (All Frames) 
Frame A:
kisi*kk*rkkhtkik*VRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDV
LQTNGGIGFLYSYLSVIFTTCNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHSY
SKDGLMITYISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLY
LRTVCQTCPNCLKTHQTSCNVKSGWCTCDGN---


Frame B:
kfqfkknkgkntpklnk*e*k*niy*yiytyyyfvy*rsiaksialivvlekiiisnlms
ykqmvvlvfythi*vlflqlviilflvvvivimycvdhiiqlfhasifhwdllmavhivi
aktd***hiyhriqqmimiakdiqqm*ffnvdqmvmypih*mlastiyllihvllnshsi
yvqcvkhvqtv*khikhhvm*kvvgvlvmvi---


Frame C:
nfnlkkikekthqn*isknkneifisifthitilfikdq*pkvlhl*wcwrrl*yqi*cl
tnkwwywfsilifkcyfynl*lyyslw*****civwiisfncstqvsfigic*wqyt*l*
qrrtndniyitgynk***lqkiynkcdfsm*trw*cirfircwhrqyty*fmyc*ihtlf
tysvsnmsklfkntsnim*cekwlvyl*w*---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP720 (VHP720Q) /CSM/VH/VHP7-A/VHP720Q.Seq.d/                       1132   0.0
VHP314 (VHP314Q) /CSM/VH/VHP3-A/VHP314Q.Seq.d/                       1132   0.0
VHO292 (VHO292Q) /CSM/VH/VHO2-D/VHO292Q.Seq.d/                       1132   0.0
VHM859 (VHM859Q) /CSM/VH/VHM8-C/VHM859Q.Seq.d/                       1132   0.0
VHL559 (VHL559Q) /CSM/VH/VHL5-C/VHL559Q.Seq.d/                       1132   0.0
VHI109 (VHI109Q) /CSM/VH/VHI1-A/VHI109Q.Seq.d/                       1132   0.0
VHH527 (VHH527Q) /CSM/VH/VHH5-B/VHH527Q.Seq.d/                       1132   0.0
CHH888 (CHH888Q) /CSM/CH/CHH8-D/CHH888Q.Seq.d/                       1132   0.0
VHO168 (VHO168Q) /CSM/VH/VHO1-C/VHO168Q.Seq.d/                       1130   0.0
VHM175 (VHM175Q) /CSM/VH/VHM1-D/VHM175Q.Seq.d/                       1130   0.0
own update 2003.10.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427338) Dictyostelium discoideum cDNA clone:ddv62h05, 5' ...  1118   0.0    1
(BJ427061) Dictyostelium discoideum cDNA clone:ddv61l03, 5' ...  1118   0.0    1
(BJ426670) Dictyostelium discoideum cDNA clone:ddv59g24, 5' ...  1118   0.0    1
(BJ425697) Dictyostelium discoideum cDNA clone:ddv56f16, 5' ...  1118   0.0    1
(BJ425076) Dictyostelium discoideum cDNA clone:ddv54e15, 5' ...  1118   0.0    1
(BJ422766) Dictyostelium discoideum cDNA clone:ddv47a03, 5' ...  1118   0.0    1
(BJ422548) Dictyostelium discoideum cDNA clone:ddv46e07, 5' ...  1118   0.0    1
(BJ366156) Dictyostelium discoideum cDNA clone:ddc37p22, 5' ...  1118   0.0    1
(BJ426603) Dictyostelium discoideum cDNA clone:ddv59g17, 5' ...  1116   0.0    1
(BJ425461) Dictyostelium discoideum cDNA clone:ddv55e19, 5' ...  1116   0.0    1
dna update 2008.11.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...    51   3e-05
AC117076_37(AC117076|pid:none) Dictyostelium discoideum chromoso...    45   0.002
CR933358_1(CR933358|pid:none) Mini antigen, Paramecium tetraurel...    43   0.007
CP001348_1942(CP001348|pid:none) Clostridium cellulolyticum H10,...    39   0.10
CP001279_1057(CP001279|pid:none) Nautilia profundicola AmH, comp...    37   0.50
CR759893_1(CR759893|pid:none) Zebrafish DNA sequence from clone ...    37   0.65
AL929119_2(AL929119|pid:none) Zebrafish DNA sequence from clone ...    35   1.4
AM494963_92(AM494963|pid:none) Leishmania braziliensis chromosom...    35   1.4
Z81083_4(Z81083|pid:none) Caenorhabditis elegans Cosmid F44F1, c...    33   5.5
AY816131_1(AY816131|pid:none) Schistosoma japonicum SJCHGC06363 ...    33   7.1
protein update 2009. 7.13
PSORT 

 psg: 0.93  gvh: 0.70  alm: 0.39  top: 0.40  tms: 0.00  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi

>> prediction for VHI109 is exc
5' end seq. ID VHI109F
5' end seq. 
>VHI109F.Seq
AAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATA
AAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAAT
AGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTC
TTACAAACAAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACT
TGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCAT
TCAACTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTAT
AGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGC
AAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTCA
TTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTAT
TTACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAAT
GTGAAAAGTGGTTGGTGTACTTGTGATGGTAATACNNNNNNNNNN
Length of 5' end seq. 645
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -