VHH831
Library VH
(Link to library)
Clone ID VHH831
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15722-1
Original site URL
Representative seq. ID VHH831P
(Link to Original site)
Representative DNA sequence
>VHH831 (VHH831Q) /CSM/VH/VHH8-B/VHH831Q.Seq.d/
ATTTCAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGAT
CAATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGA
TGTCTTACAAACATATGGTGTTGGTTTTCATTACTCATATTTAAGTGTTATTTTTACAAC
TTGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCC
ATCAATTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTA
TAGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTG
CAAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTC
ATTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTC
TTCACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAA
TGTGAAAAGTGGTTGGTGTACTTGTGATGGTAATACXXXXXXXXXXCNCCAAATGGTACC
TGTGATAATAANACTGGTAATTGTACATGCCAATAATGAACATTTTGGTAATGGTTGTGA
ATTTACTCGATGTCCACTCAATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGG
TAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTTACTCGATGTCCACT
CGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAA
TGAACATTTTGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAA
TGGTACTTGTGATATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGG
TTGCGAAATTAAATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGA
TAATGATAGTGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATC
AAGATTATTAATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAAT
TGGTTATTTTGGAAATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAA
AAATATCAAAGTATTCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTAT
TCATAATATTACAATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATA
TCTCGATGAAAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGT
TGGTTGTGTTGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAA
TAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTANGGTTTTTTA
TTACAA
sequence update 2002.10.25
Translated Amino Acid sequence
FQMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQTYGVGFHYSYLSVIFTT
CNYTIPCGSNSNNVLCGSYPSIVPRKYLSLGFVNGSTHSYSKDGLMITYISQDTTNDNDC
KRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLSSRTVCQTCPNCLKTHQTSCN
VKSGWCTCDGN---

---XQMVPVIIXLVIVHANNEHFGNGCEFTRCPLNCSTPNGTCDNNTGNCTCHNEHFGNG
CEFTRCPLDCSTPNGTCDNNTGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSGICTC
DNEHIGNGCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSINS
KGGTINIIGYFGNTTSLLTIKIGESQCKNIKVFNETTLKCDIGEGKGIHNITIIDDDLSF
TAINKFQYLDEKTKISKISRGAIAGIVVGCVVAVSLIGSIAFYYHHKNKKVNLFF*klk*
nltixvfyy


Translated Amino Acid sequence (All Frames)
Frame A:
isneifisifthitilfikdq*pkvlhl*wcwrrl*yqi*cltniwcwfsllifkcyfyn
l*lyyslw*****civwiisincstqvsfigic*wqyt*l*qrrtndniyitgynk***l
qkiynkcdfsm*trw*cirfircwhrqyty*fmyc*ihtlftysvsnmsklfkntsnim*
cekwlvyl*w*y---

---XQMVPVIIXLVIVHANNEHFGNGCEFTRCPLNCSTPNGTCDNNTGNCTCHNEHFGNG
CEFTRCPLDCSTPNGTCDNNTGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSGICTC
DNEHIGNGCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLDSINS
KGGTINIIGYFGNTTSLLTIKIGESQCKNIKVFNETTLKCDIGEGKGIHNITIIDDDLSF
TAINKFQYLDEKTKISKISRGAIAGIVVGCVVAVSLIGSIAFYYHHKNKKVNLFF*klk*
nltixvfyy

Frame B:
FQMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQTYGVGFHYSYLSVIFTT
CNYTIPCGSNSNNVLCGSYPSIVPRKYLSLGFVNGSTHSYSKDGLMITYISQDTTNDNDC
KRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLSSRTVCQTCPNCLKTHQTSCN
VKSGWCTCDGN---

---xkwyl***xw*lympimnilvmvvnlldvhsivrhqmvlviiilvivhaimnilvmv
vnlldvhsivrhqmvlviiilvivhaimnilvmvvnslnahsivqhqmvlvilivvfvhv
imnilvmvaklnllnvninvqpnmeyvimivvivnvilkqkd*rvknqdy*lnh*tqsiq
kvvq*i*lvileiqhhy*qlklvnhnvkiskysmkqh*nvilvkvkvfiilqslmmtfrs
qqsissnismkkqksqkyrevqllvlllvvlllfh*lvlllfiiitkikrlifsskn*nk
i*plxffit

Frame C:
fk*niy*yiytyyyfvy*rsiaksialivvlekiiisnlmsykhmvlvfithi*vlflql
viilflvvvivimycvdhihqlfhasifhwdllmavhiviaktd***hiyhriqqmimia
kdiqqm*ffnvdqmvmypih*mlastiyllihvllnshslhvqcvkhvqtv*khikhhvm
*kvvgvlvmvi---

---pngtcdnxtgnctcq**tfw*wl*iysmstqlfdtkwyl***yw*lymp**tfw*wl
*iysmstrlfdtkwyl***yw*lymp**tfw*wl*ihsmptllfntkwyl*y**wylym*
**tyw*wlrn*iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikiin*iirlnqfk
rwynkynwlfwkyniiinn*nw*itm*kyqsiq*nnikm*yw*r*rys*yynh***pfvh
snq*vpisr*knknlkniercncwyccwlccccfinwfycfllssqk*kg*sfllktkik
fnhxgfllq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHH831 (VHH831Q) /CSM/VH/VHH8-B/VHH831Q.Seq.d/ 2561 0.0
VHI141 (VHI141Q) /CSM/VH/VHI1-B/VHI141Q.Seq.d/ 1413 0.0
VHD437 (VHD437Q) /CSM/VH/VHD4-B/VHD437Q.Seq.d/ 1413 0.0
VHJ860 (VHJ860Q) /CSM/VH/VHJ8-C/VHJ860Q.Seq.d/ 1409 0.0
VHP265 (VHP265Q) /CSM/VH/VHP2-C/VHP265Q.Seq.d/ 1403 0.0
VHK192 (VHK192Q) /CSM/VH/VHK1-D/VHK192Q.Seq.d/ 1402 0.0
VHH671 (VHH671Q) /CSM/VH/VHH6-C/VHH671Q.Seq.d/ 1402 0.0
VHA893 (VHA893Q) /CSM/VH/VHA8-D/VHA893Q.Seq.d/ 1402 0.0
VHO766 (VHO766Q) /CSM/VH/VHO7-C/VHO766Q.Seq.d/ 1400 0.0
VHO645 (VHO645Q) /CSM/VH/VHO6-B/VHO645Q.Seq.d/ 1394 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ441344) Dictyostelium discoideum cDNA clone:ddv46n08, 3' ... 1461 0.0 2
(BJ442661) Dictyostelium discoideum cDNA clone:ddv50h16, 3' ... 1380 0.0 3
(BJ438586) Dictyostelium discoideum cDNA clone:ddv37j10, 3' ... 1374 0.0 3
(BJ446789) Dictyostelium discoideum cDNA clone:ddv63h22, 3' ... 1370 0.0 2
(BJ441328) Dictyostelium discoideum cDNA clone:ddv46j09, 3' ... 1366 0.0 2
(BJ445705) Dictyostelium discoideum cDNA clone:ddv60i12, 3' ... 1364 0.0 3
(BJ354630) Dictyostelium discoideum cDNA clone:dda54b10, 3' ... 1358 0.0 3
(AU284609) Dictyostelium discoideum gamete cDNA clone:FC-BE2... 1356 0.0 3
(BJ446619) Dictyostelium discoideum cDNA clone:ddv63e11, 3' ... 1356 0.0 3
(BJ446052) Dictyostelium discoideum cDNA clone:ddv61a18, 3' ... 1356 0.0 3
dna update 2008.11.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 125 3e-27
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom... 108 4e-22
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso... 102 3e-20
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso... 99 3e-19
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 99 5e-19
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 95 6e-18
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 94 2e-17
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 91 8e-17
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso... 90 2e-16
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 89 5e-16
protein update 2009. 7.13
PSORT

psg: 0.93 gvh: 0.70 alm: 0.19 top: 0.43 tms: 0.07 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.77 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
32.0 %: extracellular, including cell wall
20.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for VHH831 is pla

5' end seq. ID VHH831F
5' end seq.
>VHH831F.Seq
ATTTCAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGAT
CAATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGA
TGTCTTACAAACATATGGTGTTGGTTTTCATTACTCATATTTAAGTGTTATTTTTACAAC
TTGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCC
ATCAATTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTA
TAGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTG
CAAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTC
ATTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTC
TTCACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAA
TGTGAAAAGTGGTTGGTGTACTTGTGATGGTAATACNNNNNNNNNN
Length of 5' end seq. 586
3' end seq. ID VHH831Z
3' end seq.
>VHH831Z.Seq
NNNNNNNNNNCNCCAAATGGTACCTGTGATAATAANACTGGTAATTGTACATGCCAATAA
TGAACATTTTGGTAATGGTTGTGAATTTACTCGATGTCCACTCAATTGTTCGACACCAAA
TGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGG
TTGTGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGGTACTTGTGATAATAA
TACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTCACTCAATG
CCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATAGTGGTATTTGTACATG
TGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATTGAATGTAAACATAAATG
TTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGTAAATGTGATACTCAAAC
AAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCATTAGACTCAATCAATTC
AAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACAACATCATTATTAACAAT
TAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAATGAAACAACATTAAAATG
TGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTGATGATGACCTTTCGTT
CACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAAATCTCAAAAATATCGAG
AGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTTTCATTAATTGGTTCTAT
TGCTTTTTATTATCATCACAAAAATAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAATA
AAATTTAACCATTANGGTTTTTTATTACAA
Length of 3' end seq. 930
Connected seq. ID VHH831P
Connected seq.
>VHH831P.Seq
ATTTCAAATGAAATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGAT
CAATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGA
TGTCTTACAAACATATGGTGTTGGTTTTCATTACTCATATTTAAGTGTTATTTTTACAAC
TTGTAATTATACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCC
ATCAATTGTTCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTA
TAGCAAAGACGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTG
CAAAAGATATACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTC
ATTAGATGTTGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTC
TTCACGTACAGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAA
TGTGAAAAGTGGTTGGTGTACTTGTGATGGTAATAC----------CNCCAAATGGTACC
TGTGATAATAANACTGGTAATTGTACATGCCAATAATGAACATTTTGGTAATGGTTGTGA
ATTTACTCGATGTCCACTCAATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGG
TAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGAATTTACTCGATGTCCACT
CGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAA
TGAACATTTTGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAA
TGGTACTTGTGATATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGG
TTGCGAAATTAAATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGA
TAATGATAGTGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATC
AAGATTATTAATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAAT
TGGTTATTTTGGAAATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAA
AAATATCAAAGTATTCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTAT
TCATAATATTACAATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATA
TCTCGATGAAAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGT
TGGTTGTGTTGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAA
TAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTANGGTTTTTTA
TTACAA
Length of connected seq. 1496
Full length Seq ID -
Full length Seq. -
Length of full length seq. -