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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHH719
Library VH
(Link to library)
Clone ID VHH719
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID VHH719P
(Link to Original site)
Representative DNA sequence 
>VHH719 (VHH719Q) /CSM/VH/VHH7-A/VHH719Q.Seq.d/
GAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCAAAATGAAGA
ATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCAACAATTAAC
TAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGAAGAAGCATT
AGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAATTTATAATAA
ACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAATTTTCAATAA
AGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGAAACAGCAGA
AAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATCATCAGAAGG
TGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATCAGCATTTGT
AAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGATCTATCAATC
ACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGTCTATTATTC
AATGATTGATATATTTTCAGTATTAATAAATTTAGATXXXXXXXXXXTGATGATCCAAAT
TAAATCAAAACTTTACCAAGAATATCAAATACTTTAGAGAGAATAAAGAACAATTGAATA
ATATGTACCCTTCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCT
CCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATG
CTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCA
AATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCC
TCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAA
ATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGT
TTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCT
CAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAA
TCGGTGCTGAAGCCTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCT
TAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAAT
TGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAG
AGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAATTAT
TTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
nnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIEEAL
DETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKETAE
SKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASIYQS
QKNIHTQFFKNVHLQAVYYSMIDIFSVLINLD---

---MIQIKSKLYQEYQIL*re*rtie*yvpfrvgdrvgkrh*tigclrdwfnlfrsf*tf
nhsyw*cygly*igqirwftll**cyqirtrlekdskiprfnlkrcplt*nnss*yqfgf
nhs*sfk*firgy*il*dvgkrfryrvskyr*stfkeflyhrtclglklhrsydq**r*t
l*eiksnrc*sliih**wlcnwfglylkiirsk*rfrfsslvrsysiem*n*skenvg*s
kckryqrgsksfsn*kdskfptri*ii*
Translated Amino Acid sequence (All Frames) 
Frame A:
eqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnledrrsi
r*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfkrnsr
k*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sicidlsi
tkeytytil*ecsftscllfnd*yifsinkfr---

---**sklnqnftknikyfrenkeqlnnmypselvtelerdirqlgvsetgltfldhfrl
lithignamgyirlvrsgglhycsnaikfvpdlkkipkfqdltskdalspetiqastnld
siihnlsnnlsegteyfkmlvnvfatefrnianqhlknfyiivpalasnyidhminskdk
lfkkskaigaeallftddgfaiglayilklldqnkdfdslhwfdriqlkcetdqkrmlae
anakgikedqnhlaikkiqnfqqeyelfk

Frame B:
nnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIEEAL
DETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKETAE
SKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASIYQS
QKNIHTQFFKNVHLQAVYYSMIDIFSVLINLD---

---ddpn*iktlprisntleriknn*iictlqsw*qswketldnwvsprlv*pf*iildf
*slilvmlwvildwsdpvvytivvmlsnsyqt*krfqnski*pqkmpshlkqfklvpiwi
qsfiifqiiyqrvlntlrcw*tfslqsfeislini*risissylpwpqitsii*sivkin
slrnqkqsvlkpyyslmmalqlvwlis*ny*ikikisilfigsivfn*nvklikrecwlk
qmqkvskrikii*qlkrfkisnknmnyl

Frame C:
ttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*kkh*
mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*kkqqk
vnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhrsinh
kriyihnslrmfiyklsiiq*liyfqy**i*---

---MIQIKSKLYQEYQIL*re*rtie*yvpfrvgdrvgkrh*tigclrdwfnlfrsf*tf
nhsyw*cygly*igqirwftll**cyqirtrlekdskiprfnlkrcplt*nnss*yqfgf
nhs*sfk*firgy*il*dvgkrfryrvskyr*stfkeflyhrtclglklhrsydq**r*t
l*eiksnrc*sliih**wlcnwfglylkiirsk*rfrfsslvrsysiem*n*skenvg*s
kckryqrgsksfsn*kdskfptri*ii*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHH719 (VHH719Q) /CSM/VH/VHH7-A/VHH719Q.Seq.d/                       2805   0.0
SHD671 (SHD671Q) /CSM/SH/SHD6-C/SHD671Q.Seq.d/                       1516   0.0
AHL641 (AHL641Q) /CSM/AH/AHL6-B/AHL641Q.Seq.d/                       1515   0.0
VHK538 (VHK538Q) /CSM/VH/VHK5-B/VHK538Q.Seq.d/                       1511   0.0
VHB619 (VHB619Q) /CSM/VH/VHB6-A/VHB619Q.Seq.d/                       1505   0.0
CHG465 (CHG465Q) /CSM/CH/CHG4-C/CHG465Q.Seq.d/                       1503   0.0
CHR573 (CHR573Q) /CSM/CH/CHR5-D/CHR573Q.Seq.d/                       1493   0.0
VHA138 (VHA138Q) /CSM/VH/VHA1-B/VHA138Q.Seq.d/                       1491   0.0
VHK424 (VHK424Q) /CSM/VH/VHK4-A/VHK424Q.Seq.d/                       1489   0.0
SHD280 (SHD280Q) /CSM/SH/SHD2-D/SHD280Q.Seq.d/                       1489   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441225) Dictyostelium discoideum cDNA clone:ddv46f05, 3' ...  1582   0.0    1
(BJ405440) Dictyostelium discoideum cDNA clone:dds31m18, 3' ...  1516   0.0    1
(BJ354627) Dictyostelium discoideum cDNA clone:dda54a12, 3' ...  1515   0.0    1
(BJ443259) Dictyostelium discoideum cDNA clone:ddv52k09, 3' ...  1511   0.0    1
(BJ437371) Dictyostelium discoideum cDNA clone:ddv34e06, 3' ...  1505   0.0    1
(BJ379330) Dictyostelium discoideum cDNA clone:ddc34b18, 3' ...  1503   0.0    1
(BJ386285) Dictyostelium discoideum cDNA clone:ddc57a19, 3' ...  1493   0.0    1
(BJ436507) Dictyostelium discoideum cDNA clone:ddv31k09, 3' ...  1491   0.0    1
(BJ437575) Dictyostelium discoideum cDNA clone:ddv34n16, 3' ...  1483   0.0    1
(BJ405491) Dictyostelium discoideum cDNA clone:dds31j24, 3' ...  1483   0.0    1
dna update 2008.11.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R74) RecName: Full=UPF0681 protein;                               512   e-143
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   253   9e-66
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro...   253   1e-65
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   253   1e-65
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03...   251   5e-65
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033;                      251   5e-65
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN...   251   5e-65
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052...   251   5e-65
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   193   1e-47
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746...   189   3e-46
protein update 2009. 3.11
PSORT 

 psg: 0.79  gvh: 0.25  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VHH719 is nuc
5' end seq. ID VHH719F
5' end seq. 
>VHH719F.Seq
GAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCAAAATGAAGA
ATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCAACAATTAAC
TAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGAAGAAGCATT
AGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAATTTATAATAA
ACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAATTTTCAATAA
AGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGAAACAGCAGA
AAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATCATCAGAAGG
TGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATCAGCATTTGT
AAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGATCTATCAATC
ACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGTCTATTATTC
AATGATTGATATATTTTCAGTATTAATAAATTTAGATNNNNNNNNNN
Length of 5' end seq. 647
3' end seq. ID VHH719Z
3' end seq. 
>VHH719Z.Seq
NNNNNNNNNNTGATGATCCAAATTAAATCAAAACTTTACCAAGAATATCAAATACTTTAG
AGAGAATAAAGAACAATTGAATAATATGTACCCTTCAGAGTTGGTGACAGAGTTGGAAAG
AGACATTAGACAATTGGGTGTCTCCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACT
TTTAATCACTCATATTGGTAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTT
ACACTATTGTAGTAATGCTATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCA
AGATTTAACCTCAAAAGATGCCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGA
TTCAATCATTCATAATCTTTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTT
GGTAAACGTTTTCGCTACAGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTA
TATCATCGTACCTGCCTTGGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAA
ACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAAGCCTTATTATTCACTGATGATGGCTT
TGCAATTGGTTTGGCTTATATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCT
TCATTGGTTCGATCGTATTCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGA
AGCAAATGCAAAAGGTATCAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAA
TTTCCAACAAGAATATGAATTATTTAAA
Length of 3' end seq. 808
Connected seq. ID VHH719P
Connected seq. 
>VHH719P.Seq
GAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCAAAATGAAGA
ATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCAACAATTAAC
TAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGAAGAAGCATT
AGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAATTTATAATAA
ACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAATTTTCAATAA
AGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGAAACAGCAGA
AAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATCATCAGAAGG
TGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATCAGCATTTGT
AAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGATCTATCAATC
ACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGTCTATTATTC
AATGATTGATATATTTTCAGTATTAATAAATTTAGAT----------TGATGATCCAAAT
TAAATCAAAACTTTACCAAGAATATCAAATACTTTAGAGAGAATAAAGAACAATTGAATA
ATATGTACCCTTCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCT
CCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATG
CTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCA
AATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCC
TCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAA
ATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGT
TTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCT
CAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAA
TCGGTGCTGAAGCCTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCT
TAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAAT
TGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAG
AGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAATTAT
TTAAA
Length of connected seq. 1435
Full length Seq ID -
Full length Seq. -
Length of full length seq. -